Small non-coding rnas as novel therapeutics

Current Molecular Medicine

Volumn 10, Issue 4, 2010, Pages 361-368

  Rossbach, M ^a  

^a UNIVERSITY OF BONN   (Germany)

Author keywords

Cancer; Dicer; MiRNA; RNAi; SiRNA

Indexed keywords

CAPPED RNA; DICER; DOUBLE STRANDED RNA; MESSENGER RNA; MICRORNA; SMALL INTERFERING RNA;

ARTICLE; BIOINFORMATICS; CARDIOVASCULAR DISEASE; DEGENERATIVE DISEASE; GENE EXPRESSION REGULATION; GENE MUTATION; GENE SILENCING; GENE TARGETING; GENE THERAPY; GENETIC CONSERVATION; NEOPLASM; NONHUMAN; ONCOGENE; POLYADENYLATION; REGULATORY MECHANISM; REGULATORY RNA SEQUENCE; RNA DEGRADATION; RNA INTERFERENCE; RNA PROCESSING; RNA TRANSLATION; TUMOR SUPPRESSOR GENE; VIRUS INFECTION;

ANIMALS; DISEASE; GENES, TUMOR SUPPRESSOR; HUMANS; MICRORNAS; MODELS, BIOLOGICAL; NEOPLASMS; ONCOGENES; RNA INTERFERENCE; RNA, UNTRANSLATED; TRANSCRIPTIONAL ACTIVATION;

EID: 77953484176     PISSN: 15665240     EISSN: None     Source Type: Journal    
DOI: 10.2174/156652410791317048     Document Type: Article

References (79)

1. Pfeffer, S., Sewer, A., Lagos-Quintana, M., Sheridan, R., Sander, C., Grasser, F.A., van Dyk, L.F., Ho, C.K., Shuman, S., Chien, M., Russo, J.J., Ju, J., Randall, G., Lindenbach, B.D., Rice, C.M., Simon, V., Ho, D.D., Zavolan, M. and Tuschl, T. (2005) Nat. Methods, 2, 269-276.
2. Pillai, R.S., Bhattacharyya, S.N. and Filipowicz, W. (2007) Trends Cell Biol., 17, 118-126.
3. Petersen, C.P., Bordeleau, M.E., Pelletier, J. and Sharp, P.A. (2006) Mol. Cell, 21(4), 533-542.
4. Bartel, D.P. (2004) Cell, 116, 281-297.
5. Kim, V.N. (2005) Mol. Cells, 19, 1-15.
6. Martinez, J., Patkaniowska, A., Urlaub, H., Luhrmann, R. and Tuschl, T. (2002) Cell, 110, 563-574.
7. Doi, N., Zenno, S., Ueda, R., Ohki-Hamazaki, H., Ui-Tei, K. and Saigo, K. (2003) Curr. Biol., 13, 41-46.
8. Rodriguez, A., Griffiths-Jones, S., Ashurst, J.L. and Bradley, A. (2004) Genome Res., 14, 1902-1910.
9. Farh, K.K., Grimson, A., Jan, C., Lewis, B.P., Johnston, W.K., Lim, L.P., Burge, C.B. and Bartel, D.P. (2005) Science, 310, 1817-1821.
10. Borchert, G.M., Lanier, W. and Davidson, B.L. (2006) Mol. Biol., 13, 1097-1101.
11. Cullen, B.R. (2004) Mol. Cell, 16, 861-865.
12. Kim, V.N. (2005) Nat. Rev. Mol. Cell Biol., 6, 376-385.
13. Yi, R., Qin, Y., Macara, I.G. and Cullen, B.R. (2003) Genes Dev., 17, 3011-3016.
14. Basyuk, E., Suavet, F., Doglio, A., Bordonne, R. and Bertrand, E. (2003) Nucleic Acids Res., 31(22), 6593-6597.
15. Bohnsack, M.T., Czaplinski, K. and Gorlich, D. (2004) RNA, 10, 185-191.
16. Chendrimada, T.P., Gregory, R.I., Kumaraswamy, E., Norman, J., Cooch, N., Nishikura, K. and Shiekhattar, R. (2005) Nature, 436, 740-744.
17. Lee, Y., Hur, I., Park, S.Y., Kim, Y.K., Suh, M.R. and Kim, V.N. (2006) EMBO J., 25, 522-532.
18. Maniataki, E. and Mourelatos, Z. (2005) Genes. Dev., 19, 2979-2990.
19. Zeng, Y., Yi, R. and Cullen, B.R. (2003) Natl. Acad. Sci. USA, 100, 9779-9784.
20. Yekta, S., Shih, I.H. and Bartel, D.P. (2004) Science, 304, 594-596.
21. Lewis, B.P., Burge, C.B. and Bartel, D.P. (2005) Cell, 120, 15-20.
22. Nimmo, R. and Slack, F. (2009) Chromosoma, 118, 405-418.
23. Brennecke, J., Stark, A., Russell, R.B., Cohen, S.M. (2005) PLoS Biol., 3, e85.
24. nd, Ellingsen, O., Ruiz-Lozano, P., Peterson, K.L., Croce, C.M., Peschle, C. and Condorelli, G. (2007) Nat. Med., 13, 613-618.
25. Calin, G.A., Dumitru, C.D., Shimizu, M., Bichi, R., Zupo, S., Noch, E., Aldler, H., Rattan, S., Keating, M., Rai, K., Rassenti, L., Kipps, T., Negrini, M., Bullrich, F. and Croce, C.M. (2002) Proc. Natl. Acad. Sci. USA, 99, 15524-15529.
26. Calin, G.A., Liu, C.G., Sevignani, C., Ferracin, M., Felli, N., Dumitru, C.D., Shimizu, M., Cimmino, A., Zupo, S., Dono, M., Dell'Aquila, M.L., Alder, H., Rassenti, L., Kipps, T.J., Bullrich, F., Negrini, M., Croce M. and C. M. (2004) Proc. Natl. Acad. Sci. USA, 101, 11755-11760.
27. Zhang, L., Huang, J., Yang, N., Greshock, J., Megraw, M.S., Giannakakis, A., Liang, S., Naylor, T.L., Barchetti, A., Ward, M.R., Yao, G., Medina, A., O'Brien-Jenkins, A., Katsaros, D., Hatzigeorgiou, A., Gimotty, P.A., Weber, B.L. and Coukos, G. (2006) Proc. Natl. Acad. Sci. USA, 103, 9136-9141.
28. Venturini, L., Battmer, K., Castoldi, M., Schultheis, B., Hochhaus, A., Muckenthaler, M. U., Ganser, A., Eder, M. and Scherr, M. (2007) Blood, 109, 4399-4405.
29. O'Brien, S.J., Nash, W.G., Goodwin, J.L., Lowy, D.R. and Chang, E.H. (1983) Nature, 302, 839-842.
30. Cimmino, A., Calin, G.A., Fabbri, M., Iorio, M.V., Ferracin, M., Shimizu, M., Wojcik, S.E., Aqeilan, R.I., Zupo, S., Dono, M., Rassenti, L., Alder, H., Volinia, S., Liu, C.G., Kipps, T.J., Negrini, M. and Croce, C.M. (2005) Proc. Natl. Acad. Sci. USA, 102, 13944-13949.
31. Eis, P.S., Tam, W., Sun, L., Chadburn, A., Li, Z., Gomez, M.F., Lund, E., Dahlberg, J.E. (2005) Proc. Natl. Acad. Sci. USA, 102, 3627-3632.
32. Roldo, C., Missiaglia, E., Hagan, J.P., Falconi, M., Capelli, P., Bersani, S., Calin, G.A., Volinia, S., Liu, C.G., Scarpa, A. and Croce, C.M. (2006) J. Clin. Oncol., 24, 4677-4684.
33. Yanaihara, N., Caplen, N., Bowman, E., Seike, M., Kumamoto, K., Yi, M., Stephens, R. M., Okamoto, A., Yokota, J., Tanaka, T., Calin, G.A., Liu, C.G., Croce, C.M. and Harris, C.C. (2006) Cancer Cell, 9, 189-198.
34. Iorio, M.V., Ferracin, M., Liu, C.G., Veronese, A., Spizzo, R., Sabbioni, S., Magri, E., Pedriali, M., Fabbri, M., Campiglio, M., Menard, S., Palazzo, J.P., Rosenberg, A., Musiani, P., Volinia, S., Nenci, I., Calin, G.A., Querzoli, P., Negrini, M. and Croce, C.M. (2005) Cancer Res., 65, 7065-7070.
35. Kumar, M.S., Lu, J., Mercer, K.L., Golub, T.R. and Jacks, T. (2007) Nat. Genet., 39, 673-677.
36. Bartel, D.P. (2004) Cell, 116, 281-297.
37. Johnson, S.M., Grosshans, H., Shingara, J., Byrom, M., Jarvis, R., Cheng, A., Labourier, E., Reinert, K.L., Brown, D. and Slack, F.J. (2005) Cell, 120, 635-647.
38. Karube, Y., Tanaka, H., Osada, H., Tomida, S., Tatematsu, Y., Yanagisawa, K., Yatabe, Y., Takamizawa, J., Miyoshi, S., Mitsudomi, T. and Takahashi, T. (2005) Cancer Sci., 96, 111-115.
39. Fukagawa, T., Nogami, M., Yoshikawa, M., Ikeno, M., Okazaki, T., Takami, Y., Nakayama, T. and Oshimura, M. (2004) Nat. Cell Biol., 6, 784-791.
40. Bernstein, E., Kim, S.Y., Carmell, M.A., Murchison, E.P., Alcorn, H., Li, M.Z., Mills, A.A., Elledge, S.J., Anderson, K.V. and Hannon, G.J. (2003) Nat. Genet., 35, 215-217.
41. Nelson, P., Kiriakidou, M., Sharma, A., Maniataki, E. & Mourelatos, Z. (2003) Trends Biochem. Sci., 28, 534-540.
42. Carmell, M.A., Xuan, Z., Zhang, M.Q. and Hannon, G.J. (2002) Genes Dev., 16, 2733-2742.
43. Qiao, D., Zeeman, A.M., Deng, W., Looijenga, L.H. and Lin, H. (2002) Oncogene, 21, 3988-3999.
44. Takamizawa, J., Konishi, H., Yanagisawa, K., Tomida, S., Osada, H., Endoh, H., Harano, T., Yatabe, Y., Nagino, M., Nimura, Y., Mitsudomi, T. and Takahashi T. (2004) Cancer Res., 64, 3753-3756.
45. Esquela-Kerscher, A. and Slack, F. (2006) Nat. Rev. Cancer, 6, 259-269.
46. Vidal, L., Blagden, S., Attard, G. and de Bono, J. (2005) Eur. J. Cancer, 41, 2812-2818.
47. Jackson, A.L., Burchard, J., Schelter, J., Chau, B.N., Cleary, M., Lim, L., Linsley, P.S. (2006) RNA, 12, 1179-1187.
48. Soutschek, J., Akinc, A., Bramlage, B., Charisse, K., Constien, R., Donoghue, M., Elbashir, S., Geick, A., Hadwiger, P., Harborth, J., John, M., Kesavan, V., Lavine, G., Pandey, R.K., Racie, T., Rajeev, K.G., Röhl, I., Toudjarska, I., Wang, G., Wuschko, S., Bumcrot, D., Koteliansky, V., Limmer, S., Manoharan, M. and Vornlocher H.P. (2004) Nature, 432, 173-178.
49. Krützfeldt, J., Rajewsky, N., Braich, R., Rajeev, K. G., Tuschl, T., Manoharan, M. and Stoffel, M. (2005) Nature, 438, 685-689
50. Bijsterbosch, M.K., Rump, E.T., De Vrueh, R.L., Dorland, R., van Veghel, R., Tivel, K.L., Biessen, E.A., van Berkel, T.J. and Manoharan, M. (2000) Nucleic Acids Res., 28, 2717-2725.
51. Grimm, D., Streetz, K.L., Jopling, C.L., Storm, T.A., Pandey, K., Davis, C.R., Marion, P., Salazar, F. and Kay, M.A. (2006) Nature, 441, 537-541.
52. Davis, S., Lollo, B., Freier, S. and Esau, C. (2006) Nucl. Acids Res., 34, 2294-2304.
53. Hutvagner, G., Simard, M.J., Mello, C.C. and Zamore, P.D. (2004) PLoS Biol., 2, E98.
54. Prakash, T.P., Allerson, C.R., Dande, P., Vickers, T.A.,Sioufi, N., Jarres, R., Baker, B. F., Swayze, E.E., Griffey,.H. and Bhat, B. (2005) J. Med. Chem., 48, 4247-4253.
55. Chang, J., Nicolas, E., Marks, D., Sander, C., Lerro, A., Buendia, M.A., Xu, C., Mason, W.S., Moloshok, T., Bort, R., Zaret, K.S. and Taylor, J.M. (2004) RNA Biol., 1, 106-113.
56. Grunweller, A. and Hartmann, R.K. (2007) BioDrugs, 21, 235-243.
57. Birmingham, A., Anderson, E.M., Reynolds, A., Ilsley-Tyree, D., Leake, D., Fedorov, Y., Baskerville, S., Maksimova, E., Robinson, K., Karpilow, J., Marshall, W.S. and Khvorova, A. (2006) Nat. Methods, 3, 199-204.
58. Soifer, H.S., Rossi, J.J. and Saetrom, P. (2007) Mol. Ther., 15, 2070-1079.
59. Elmen, J., Lindow, M., Silahtaroglu, A., Bak, M., Christensen, M., Lind-Thomsen, A., Hedtjarn, M., Hansen, J.B., Hansen, H.F., Straarup, E.M., McCullagh, K., Kearney, P. and Kauppinen, S. (2008) Nuc. Acids Res., 36, 1153-1162.
60. Soutschek, J., Akinc, A., Bramlage, B., Charisse, K., Constien, R., Donoghue, M., Elbashir, S., Geick, A., Hadwiger, P., Harborth, J., John, M., Kesavan, V., Lavine, G., Pandey, R.K., Racie, T., Rajeev, K.G., Rohl, I., Toudjarska, I., Wang, G., Wuschko, S., Bumcrot, D., Koteliansky, V., Limmer, S., Manoharan, M. and Vornlocher, H.P. (2004) Nature, 432, 173-178.
61. Soifer, H.S., Rossi, J.J. and Saetrom, P. (2007) Mol. Ther., 15, 2070-1079.
62. Aagaard, L., Amarzguioui, M., Sun, G., Santos, L.C., Ehsani, A., Prydz, H., Rossi, J.J. (2007) Mol. Ther., 15, 938-945.
63. Ebert, M.S., Neilson, J.R. and Sharp, P.A. (2007) Nat. Methods, 4, 721-726.
64. Morris, K.V., Chan, S.W., Jacobsen, S.E. and Looney, D.J. (2004) Science, 305, 1289-1292.
65. Brown, B.D., Cantore, A., Annoni, A., Sergi, L.S., Lombardo, A., Della Valle, P., D'Angelo, A. and Naldini, L. (2007) Blood, 110, 4144-4152.
66. Xiao, J., Yang, B., Lin, H., Lu, Y., Luo, X. and Wang, Z. (2007) J. Cell Physiol., 212, 285-292.
67. Doench, J.G., Petersen, C.P. and Sharp, P.A. (2003) Genes Dev., 17, 438-442.
68. McCaffrey, A.P., Meuse, L., Pham, T.T., Conklin, D.S., Hannon, G.J. and Kay, M.A. (2002) Nature, 418, 38-39.
69. Brummelkamp, T.R., Bernards, R., Agami, R. (2002) Science, 296, 550-553.
70. Costinean, S., Zanesi, N., Pekarsky, Y., Tili, E., Volinia, S., Heerema, N., Croce, C.M. (2006) Proc. Natl. Acad. Sci. USA, 103, 7024-7029.
71. Care, A., Catalucci, D., Felicetti, F., Bonci, D., Addario, A., Gallo, P., Bang, M.L., Segnalini, P., Gu, Y., Dalton, N.D., Elia, L., Latronico, M.V., Hoydal, M., Autore, C., Russo, M.A., Dorn, G.W., 2nd, Ellingsen, O., Ruiz-Lozano, P., Peterson, K.L., Croce, C.M., Peschle, C. and Condorelli, G. (2007) Nat. Med., 13, 613-618.
72. Boden, D., Pusch, O., Silbermann, R., Lee, F., Tucker, L. and Ramratnam, B. (2004) Nucl. Acids Res., 32, 1154-1158.
73. Soifer, H.S., Rossi, J.J. and Saetrom, P. (2007) Mol. Ther., 15, 2070-1079.
74. Chung, K.H., Hart, C.C., Al-Bassam, S., Avery, A., Taylor, J., Patel, P.D., Vojtek, A.B. and Turner, D.L. (2006) Nucl. Acids Res., 34, e53.
75. Zeng, Y., Wagner, E.J. and Cullen, B.R. (2002) Mol. Cell, 9, 1327-33.
76. Wang, J., Theunissen, T.W. and Orkin, S.H. (2007) Natl. Acad. Sci. USA, 104, 20850-20855.
77. Dickins, R.A., McJunkin, K., Hernando, E., Premsrirut, P.K., Krizhanovsky, V., Burgess, D.J., Kim, S.Y., Cordon-Cardo, C., Zender, L., Hannon, G.J. and Lowe, S.W. (2007) Nat. Genet., 39, 914-921.
78. Liang, Z., Wu, H., Reddy, S., Zhu, A., Wang, S., Blevins, D., Yoon, Y., Zhang, Y., Shim, H. (2007) Biochem. Biophys. Res. Commun., 363, 542-546.
79. Scaria, V., Hariharan, M., Brahmachari, S.K., Maiti, S. and Pillai, B. (2007) Chem. Med. Chem., 2, 789-792.