DNA repair glycosylases with a [4Fe-4S] cluster: A redox cofactor for DNA-mediated charge transport?

Journal of Inorganic Biochemistry

Volumn 101, Issue 11-12, 2007, Pages 1913-1921

  Boal, Amie K ^a   Yavin, Eylon ^a   Barton, Jacqueline K ^a  

^a California Institute of Technology   (United States)

Author keywords

DNA damage; DNA repair

Indexed keywords

DNA GLYCOSYLASE MUTY; ENDONUCLEASE; IRON SULFUR PROTEIN; METALLOPROTEIN;

ARTICLE; BASE MISPAIRING; DNA REPAIR; ELECTRON SPIN RESONANCE; ELECTRON TRANSPORT; ENZYME STABILITY; ESCHERICHIA COLI; EXCISION REPAIR; OXIDATION REDUCTION REACTION; SIGNAL TRANSDUCTION;

DNA DAMAGE; DNA GLYCOSYLASES; DNA REPAIR; DNA REPAIR ENZYMES; IRON-SULFUR PROTEINS; MODELS, BIOLOGICAL;

ESCHERICHIA COLI;

EID: 35348895032     PISSN: 01620134     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jinorgbio.2007.05.001     Document Type: Article

References (79)

1. In: Friedberg E.C., Walker G.C., Siede W., Wood R.D., Schultz R.A., and Ellenberger T. (Eds). DNA Repair and Mutagenesis (2006), ASM Press, Washington, DC
2. David S.S., and Williams S.D. Chem. Rev. 98 (1998) 1221-1262
3. Blainey P.C., van Oijen A.M., Banerjee A., Verdine G.L., and Xie X.S. Proc. Natl. Acad. Sci. USA 103 (2006) 5752-5757
4. Francis A.W., and David S.S. Biochemistry 42 (2003) 801-810
5. Halford S.E., and Szczelkun M.D. Eur. Biophys. J. 31 (2002) 257-267
6. Gowers D.M., and Halford S.E. EMBO J. 22 (2003) 1410-1418
7. Gerland U., Moroz J.D., and Hwa T. Proc. Natl. Acad. Sci. USA 99 (2002) 12015-12020
8. Cunningham R.P., Asahara H., Bank J.F., Scholes C.P., Salerno J.C., Surerus K., Munck E., McCracken J., Peisach J., and Emptage M.H. Biochemistry 28 (1989) 4450-4455
9. Hinks J.A., Evans M.C.W., de Miguel Y., Sartori A.A., Jiricny J., and Pearl L.H. J. Biol. Chem. 277 (2002) 16936-16940
10. Rebeil R., Sun Y., Chooback L., Pedraza-Reyes M., Kinsland C., Begley T.P., and Nicholson W.L. J. Bacteriol. 180 (1998) 4879-4885
11. Demple B., and Linn S. Nature 287 (1980) 203-208
12. Katcher H.L., and Wallace S.S. Biochemistry 22 (1983) 4071-4081
13. Breimer L.H., and Lindahl T. J. Biol. Chem. 259 (1984) 5543-5548
14. Weiss R.B., and Duker N.J. Nucleic Acids Res. 14 (1986) 6621-6631
15. Boorstein R.J., Hilbert T.P., Cadet J., Cunningham R.P., and Teebor G.W. Biochemistry 28 (1989) 6164-6170
16. Wagner J.R., Blount B.C., and Weinfeld M. Anal. Biochem. 233 (1996) 76-86
17. Dizdaroglu M., Laval J., and Boiteux S. Biochemistry 32 (1993) 12105-12111
18. Kuo C.F., McRee D.E., Fisher C.L., O'Handley S.F., Cunningham R.P., and Tainer J.A. Science 258 (1992) 434-440
19. Thayer M.M., Ahern H., Xing D., Cunningham R.P., and Tainer J.A. EMBO J. 14 (1995) 4108-4120
20. Guan Y., Manuel R.C., Arvai A.S., Parikh S.S., Mol C.D., Miller J.H., Lloyd S., and Tainer J.A. Nat. Struct. Biol. 5 (1998) 1058-1064
21. Michaels M.L., Pham L., Nghiem Y., Cruz C., and Miller J.H. Nucleic Acids Res. 18 (1990) 3841-3845
22. Nghiem Y., Cabrera M., Cupples C.G., and Miller J.H. Proc. Natl. Acad. Sci. USA 85 (1988) 2709-2713
23. Michaels M.L., Cruz C., Grollman A.P., and Miller J.H. Proc. Natl. Acad. Sci. USA 89 (1992) 7022-7025
24. Michaels M.L., and Miller J.H. J. Bacteriol. 174 (1992) 6321-6325
25. Michaels M.L., Tchou J., Grollman A.P., and Miller J.H. Biochemistry 31 (1992) 10964-10968
26. Gogos A., Cillo J., Clarke N.D., and Lu A.L. Biochemistry 35 (1996) 16665-16671
27. L Lu A., Tsai-Wu J.J., and Cillo J. J. Biol. Chem. 270 (1995) 23582-23588
28. Manuel R.C., Czerwinski E.W., and Lloyd R.S. J. Biol. Chem. 271 (1996) 16218-16226
29. Francis A.W., Helquist S.A., Kool E.T., and David S.S. J. Am. Chem. Soc. 125 (2003) 16235-16242
30. Chepanoske C.L., Porello S.L., Fujiwara T., Sugiyama H., and David S.S. Nucleic Acids Res. 27 (1999) 3197-3204
31. Vidmar J.J., and Cupples C.G. Can. J. Microbiol. 39 (1993) 892-894
32. Bulychev N.V., Varaprasad C.V., Dorman G., Miller J.H., Eisenberg M., Grollman A.P., and Johnson F. Biochemistry 35 (1996) 13147-13156
33. Porello S.L., Leyes A.E., and David S.S. Biochemistry 37 (1998) 14756-14764
34. Radicella J.P., Clark E.A., and Fox M.S. Proc. Natl. Acad. Sci. USA 85 (1988) 9674-9678
35. Fu W., O'Handley S., Cunningham R.P., and Johnson M.K. J. Biol. Chem. 267 (1992) 16135-16137
36. Porello S.L., Cannon M.J., and David S.S. Biochemistry 37 (1998) 6465-6475
37. Messick T.E., Chmiel N.H., Golinelli M.P., Langer M.R., Joshua-Tor L., and David S.S. Biochemistry 41 (2002) 3931-3942
38. Golinelli M.P., Chmiel N.H., and David S.S. Biochemistry 38 (1999) 6997-7007
39. Fromme J.C., and Verdine G.L. EMBO J. 22 (2003) 3461-3471
40. Fromme J.C., Banerjee A., Huang S.J., and Verdine G.L. Nature 427 (2004) 652-656
41. Kelley S.O., and Barton J.K. Science 283 (1999) 375-381
42. O'Neill M.A., and Barton J.K. In: Schuster G.B. (Ed). Topics in Current Chemistry: Electron Transfer in DNA - I (2004), Springer-Verlag, Heidelberg 67-115
43. Schuster G.B. Acc. Chem. Res. 33 (2000) 253-260
44. Giese B. Annu. Rev. Biochem. 71 (2002) 51-70
45. Nunez M.E., Hall D.B., and Barton J.K. Chem. Biol. 6 (1999) 85-97
46. Bhattacharya P.K., and Barton J.K. J. Am. Chem. Soc. 123 (2001) 8649-8656
47. Hall D.B., and Barton J.K. J. Am. Chem. Soc. 119 (1997) 5045-5046
48. Boon E.M., Ceres D.M., Drummond T.G., Hill M.G., and Barton J.K. Nat. Biotechnol. 18 (2000) 1096-1100
49. Boal A.K., and Barton J.K. Bioconjug. Chem. 16 (2005) 312-321
50. Nunez M.E., Holmquist G.P., and Barton J.K. Biochemistry 40 (2001) 12465-12471
51. Nunez M.E., Noyes K.T., and Barton J.K. Chem. Biol. 9 (2002) 403-415
52. Kelley S.O., Boon E.M., Barton J.K., Jackson N.M., and Hill M.G. Nucleic Acids Res. 27 (1999) 4830-4837
53. Gorodetsky A.A., and Barton J.K. Langmuir 22 (2006) 7917-7922
54. Boon E.M., Salas J.E., and Barton J.K. Nat. Biotechnol. 20 (2002) 282-286
55. Boon E.M., Livingston A.L., Chmiel N.H., David S.S., and Barton J.K. Proc. Natl. Acad. Sci. USA 100 (2003) 12543-12547
56. Boal A.K., Yavin E., Lukianova O.A., O'Shea V.L., David S.S., and Barton J.K. Biochemistry 44 (2005) 8397-8407
57. Gorodetsky A.A., Boal A.K., and Barton J.K. J. Am. Chem. Soc. 128 (2006) 12082-12083
58. Cowan J.A., and Lui S.M. Adv. Inorg. Chem. 45 (1998) 313-350
59. Rajski S.R., Jackson B.A., and Barton J.K. Mutat. Res. 447 (2000) 49-72
60. Demple B., and Harrison L. Annu. Rev. Biochem. 63 (1994) 915-948
61. Lindahl T., and Nyberg B. Biochemistry 13 (1974) 3405-3410
62. Jacobs K.L., and Grogan D.W. J. Bacteriol. 179 (1997) 3298-3303
63. Steenken S., and Jovanovic S.V. J. Am. Chem. Soc. 119 (1997) 617-618
64. Cadet J., Bellon S., Berger M., Bourdat A.G., Douki T., Duarte V., Frelon S., Gasparutto D., Muller E., Ravanat J.L., and Sauvaigo S. Biol. Chem. 383 (2002) 933-943
65. Stemp E.D.A., Arkin M.R., and Barton J.K. J. Am. Chem. Soc. 119 (1997) 2921-2925
66. Yavin E., Boal A.K., Stemp E.D.A., Boon E.M., Livingston A.L., O'Shea V.L., David S.S., and Barton J.K. Proc. Natl. Acad. Sci. USA 102 (2005) 3546-3551
67. Cullis P.M., Malone M.E., and Merson Davies L.A. J. Am. Chem. Soc. 118 (1996) 2775-2781
68. Dilg A.W.E., Mincione G., Achterhold K., Iakovleva O., Mentler M., Luchinat C., Bertini I., and Parak F.G. J. Biol. Inorg. Chem. 4 (1999) 727-741
69. Johnson M.K., Duderstadt R.E., and Duin E.C. Adv. Inorg. Chem. 47 (1999) 1-82
70. Arkin M.R., Stemp E.D.A., Coates Pulver S., and Barton J.K. Chem. Biol. 4 (1997) 389-400
71. Yavin E., Stemp E.D.A., O'Shea V.L., David S.S., and Barton J.K. Proc. Natl. Acad. Sci. USA 103 (2006) 3610-3614
72. Hickerson R.P., Prat F., Miller J.G., Foote C.S., and Burrows C.J. J. Am. Chem. Soc. 121 (1999) 9423-9428
73. Seidel C.A.M., Schulz A., and Sauer M.H.M. J. Phys. Chem. 100 (1996) 5541-5553
74. Porello S.L., Williams S.D., Kuhn H., Michaels M.L., and David S.S. J. Am. Chem. Soc. 118 (1996) 10684-10692
75. Al-Tassan N., Chmiel N.H., Maynard J., Fleming N., Livingston A.L., Williams G.T., Hodges A.K., Davies D.R., David S.S., Sampson J.R., and Cheadle J.P. Nat. Genet. 30 (2002) 227-232
76. Sampson J.R., Jones S., Dolwani S., and Cheadle J.P. Biochem. Soc. Trans. 33 (2005) 679-683
77. Livingston A.L., Kundu S., Henderson Pozzi M., Anderson D.W., and David S.S. Biochemistry 44 (2005) 14179-14190
78. Cupples C.G., and Miller J.H. Proc. Natl. Acad. Sci. USA 86 (1989) 5345-5349
79. Tano K., Iwamatsu Y., Yasuhira S., Utsumi H., and Takimoto K. J. Radiat. Res. 42 (2001) 409-413