Escherichia coli MutY and Fpg utilize a processive mechanism for target location

Biochemistry

Volumn 42, Issue 3, 2003, Pages 801-810

  Francis, Anthony W ^a   David, Sheila S ^a  

^a UNIVERSITY OF UTAH   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

TARGET LOCATION;

DNA; ESCHERICHIA COLI; OLIGOMERS; SODIUM CHLORIDE;

ENZYMES;

7,8 DIHYDRO 8 OXO 2' DEOXYGUANOSINE; 8 HYDROXYGUANINE; BACTERIAL ENZYME; DNA FORMAMIDOPYRIMIDINE GLYCOSYLASE; DNA GLYCOSYLASE MUTY; NUCLEOTIDE; POLYNUCLEOTIDE; SODIUM CHLORIDE; UNCLASSIFIED DRUG;

AMINO TERMINAL SEQUENCE; ARTICLE; BASE MISPAIRING; CARBOXY TERMINAL SEQUENCE; DIFFUSION; DNA DAMAGE; ENZYME MECHANISM; ESCHERICHIA COLI; EXCISION REPAIR; NONHUMAN; PRIORITY JOURNAL;

BINDING SITES; CATALYSIS; DEOXYRIBONUCLEASE ECORI; DNA GLYCOSYLASES; DNA REPAIR; DNA-BINDING PROTEINS; DNA-FORMAMIDOPYRIMIDINE GLYCOSYLASE; ELECTROPHORESIS, POLYACRYLAMIDE GEL; ESCHERICHIA COLI PROTEINS; GUANINE; N-GLYCOSYL HYDROLASES; PEPTIDE FRAGMENTS; PROTEIN STRUCTURE, TERTIARY; RESTRICTION MAPPING; SODIUM CHLORIDE; SUBSTRATE SPECIFICITY;

BACTERIA (MICROORGANISMS); ESCHERICHIA COLI; NEGIBACTERIA; ZIZIPHUS MAURITIANA;

EID: 0037469130     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi026375+     Document Type: Article

References (50)

1. Beckman, K. B., and Ames, B. N. (1997) J. Biol. Chem. 272, 19633-19636.
2. Cadet, J., Delatour, T., Douki, T., Gasparutto, D., Pouget, J.-P., Ravanat, J.-L., and Sauvaigo, S. (1999) Mutat. Res. 424, 9-21.
3. Tajiri, T., Maki, H., and Sekiguchi, M. (1995) Mutat. Res. 336, 257-267.
4. Inoue, M., Kamiya, H., Fujikawa, K., Ootsuyama, Y., Murata-Kamiya, N., Osaki, T., Yasumato, K., and Kasai, H. (1998) J. Biol. Chem. 273, 11069-11074.
5. Shibutani, S., Takeshita, M., and Grollman, A. P. (1991) Nature 349, 431-434.
6. Grollman, A. P., and Moriya, M. (1993) Trends Genet, 9, 246-249.
7. Wood, M. L., Esteve, A., Morningstar, M. L., Kuziemko, G. M., and Essigmann, J. M. (1992) Nucleic Acids Res. 20, 6023-6032.
8. Michaels, M. L., Tchou, J., Grollman, A. P., and Miller, J. H. (1992) Biochemistry 31, 10964-10968.
9. Michaels, M. L., Cruz, C., Grollman. A. P., and Miller, J. H. (1992) Proc. Natl. Acad. Sci. U.S.A. 89, 7022-7025.
10. David, S. S., and Williams, S. D. (1998) Chem. Rev. 98, 1221-1261.
11. Schärer, O. D., and Jiricny, J. (2001) BioEssays 23, 270-281.
12. Al-Tassan, N. C., Maynard, J., Fleming, N., Livingston, A. L., Williams, G. T., Hodges, A. K., Rhodri-Davies, D., David, S. S., Sampson, J. R., and Cheadle, J. P. (2002) Nat. Genet. 30, 227-232.
13. Williams, S. D., and David, S. S. (1998) Nucleic Acids Res. 26, 5123-5133.
14. Radicella, J. P., Clark, E. A., and Fox, M. S. (1988) Proc. Natl. Acad. Sci. U.S.A. 85, 9674-9678.
15. Tsai-Wu, J.-J., Liu, H.-F., and Lu, A.-L. (1992) Proc. Natl. Acad. Sci. U.S.A. 89, 8779-8783.
16. Porello, S. L., Leyes, A. E., and David, S. S. (1998) Biochemistry 37, 14756-14764.
17. Michaels, M. L., Pham, L., Nghiem, Y., Cruz, C., and Miller, J. H., (1990) Nucleic Acids Res. 18, 3841-3845.
18. Guan, Y., Manuel, R. C., Arvai, A. S., Parikh, S. S., Mol, C. D., Miller, J. H., Lloyd, R. S., and Tainer, J. A. (1998) Nat. Struct. Biol. 5, 1058-1064.
19. Nash, H. M., Bruner, S. D., Sharer, O. D., Kawate, T., Addona, T. A., Spooner, E., Lane, W. S., and Verdine, G. L. (1996) Curr. Biol. 6, 1230-1233.
20. Noll, D. M., Gogos, A., Granek, J. A., and Clarke, N. D. (1999) Biochemistry 38, 6374-6379.
21. Volk, D. E., House, P. G., Thiviyanathan, V., Luxon, B. A., Zhang, S., Lloyd, R. S., and Gorenstein, D. G. (2000) Biochemistry 39, 7331-7336.
22. Chmiel, N. H., Golinelli, M.-P., Francis, A. W., and David, S. S. (2001) Nucleic Acids Res. 29, 553-564.
23. Leipold, M. D., Muller, J. G., Burrows, C. J., and David, S. S. (2000) Biochemistry 39, 14984-14992.
24. Bhagwat, M., and Gerlt, J. A. (1996) Biochemistry 35, 659-665.
25. Gilboa, R., Zharkov, D., Golan, G., Fernandez, A., Gerchman, S., Matz, E., Kycia, J., Grollman, A. P., and Shoham, G. (2002) J. Biol. Chem. 277, 19811-19816.
26. Serre, L., Periere de Jesus, P., Boiteux, S., Zelwer, C., and Castaing, B. (2002) EMBO J. 21, 2854-2865.
27. Fromme, J. C., and Verdine, G. L. (2002) Nat. Stuct. Biol. 9, 544-552.
28. Berg, O. G., Winter, R. B., and von Hippel, P. H. (1981) Biochemistry 20, 6929-6948.
29. Lloyd, R. S., Hanawalt, P. C., and Dodson, M. L. (1980) Nucleic Acids Res. 8, 5113-5127.
30. Ganesan, A. K., Seawell, P. C., Lewis, R. J., and Hanawalt, P. C. (1986) Biochemistry 25, 5751-5755.
31. Dowd, D. R., and Lloyd, R. S. (1990) J. Biol. Chem. 265, 3424-3431.
32. Gruskin, E. A., and Lloyd, R. S. (1986) J. Biol. Chem. 261, 9607-9613.
33. Gruskin, E. A., and Lloyd, R. S. (1988) J. Biol. Chem. 263, 12738-12743.
34. Bennett, S. E., and Sanderson, R. J. (1995) Biochemistry 34, 6109-6119.
35. Higley, M., and Lloyd, R. S. (1993) Mutat. Res 294, 109-116.
36. Hamilton, R. W., and Lloyd, R. S. (1989) J. Biol. Chem. 264, 17422-17427.
37. Porello, S. L., Williams, S. D., Kuhn, H., Michaels, M. L., and David, S. S. (1996) J. Am. Chem. Soc. 118, 10684-10692.
38. Bradford, M. M. (1976) Anal. Chem. 72, 248-254.
39. Sambrook, J., Fritsch, E. F., and Maniatis, T. (1989) Molecular cloning, A laboratory manual, 2nd ed., Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
40. Jack, W. E., Terry, B. J., and Modrich, P. (1982) Proc. Natl. Acad. Sci. U.S.A. 79, 4010-4014.
41. Terry, B. J., Jack, W. E., and Modrich, P. (1985) J. Biol. Chem. 260, 13130-13137.
42. von Hippel, P. H., and Berg, O. G. (1989) J. Biol. Chem. 264, 675-678.
43. Porello, S. L. (1999) Ph.D. Thesis in Chemistry, University of Utah, Salt Lake City, UT.
44. Castaing, B., Geiger, A., Seliger, H., Nehls, P., Laval, J., Zelwer, C., and Boiteux, S. (1993) Nucleic Acids Res. 21, 2899-2905.
45. Pope, M. A., Porello, S. L., and David, S. S. (2002) J. Biol. Chem. 277, 22605-22615.
46. Tchou, J., Bodepudi, V., Shibutani, S., Antoscheckin, I., Miller, J., Grollman, A. P., and Johnson, F. P. (1994) J. Biol. Chem. 269, 15318-15324.
47. Kornberg, A., and Baker, T. A. (1992) DNA Replication, 2nd ed., Freeman, New York.
48. Carey, D. C., and Strauss, P. R. (1999) Biochemistry 38, 16553-16560.
49. Demple, B., and Harrison, L. (1994) Annu. Rev. Biochem. 63, 915-948.
50. Hamilton, M. L., Guo, Z., Fuller, C. D., Remmen, H. V., Ward, W. F., Austad, S. N., Troyer, D. A., Thompson, I., and Richardson, A. (2001) Nucleic Acids Res. 29, 2117-2126.