-
1
-
-
2542449370
-
Single nucleotide polymorphism (SNP) discovery and genotyping in mammals: A targeted-gene approach
-
Aitken N., Smith S., Schwarz C., Morin P.A. Single nucleotide polymorphism (SNP) discovery and genotyping in mammals: A targeted-gene approach. Mol. Ecol. 13:2004;1423-1431
-
(2004)
Mol. Ecol.
, vol.13
, pp. 1423-1431
-
-
Aitken, N.1
Smith, S.2
Schwarz, C.3
Morin, P.A.4
-
2
-
-
0032088099
-
Assessing the relative contribution of molecular and morphological characters in simultaneous analysis trees
-
Baker R.H., Yu X.B., DeSalle R. Assessing the relative contribution of molecular and morphological characters in simultaneous analysis trees. Mol. Phylogenet. Evol. 9:1998;427-436
-
(1998)
Mol. Phylogenet. Evol.
, vol.9
, pp. 427-436
-
-
Baker, R.H.1
Yu, X.B.2
Desalle, R.3
-
3
-
-
0031371067
-
Multiple sources of character information and the phylogeny of Hawaiian drosophilids
-
Baker R.H., DeSalle R. Multiple sources of character information and the phylogeny of Hawaiian drosophilids. Syst. Biol. 46:1997;654-673
-
(1997)
Syst. Biol.
, vol.46
, pp. 654-673
-
-
Baker, R.H.1
Desalle, R.2
-
4
-
-
0034602344
-
A Kingdom-level phylogeny of eukaryotes based on combined protein data
-
Baldauf S.L., Roger A.J., Wenk-Siefert I., Doolittle W.F. A Kingdom-level phylogeny of eukaryotes based on combined protein data. Science. 290:2000;972-977
-
(2000)
Science
, vol.290
, pp. 972-977
-
-
Baldauf, S.L.1
Roger, A.J.2
Wenk-Siefert, I.3
Doolittle, W.F.4
-
6
-
-
0012301705
-
Assessing the impact of comparative genomic sequence data on the functional annotation of the Drosophila genome
-
Bergman C.M., Pfeiffer B.D., Rincón-Limas D.E., Hoskins R.A., Gnirke A., Mungall C.J., Wang A.M., Kronmiller B., Pacleb J., Park S., Stapleton M., Wan K., George R.A., de Jong P.J., Botas J., Rubin G.M., Celniker S.E. Assessing the impact of comparative genomic sequence data on the functional annotation of the Drosophila genome. Genome Biol. 3:2002;1-20
-
(2002)
Genome Biol.
, vol.3
, pp. 1-20
-
-
Bergman, C.M.1
Pfeiffer, B.D.2
Rincón-Limas, D.E.3
Hoskins, R.A.4
Gnirke, A.5
Mungall, C.J.6
Wang, A.M.7
Kronmiller, B.8
Pacleb, J.9
Park, S.10
Stapleton, M.11
Wan, K.12
George, R.A.13
De Jong, P.J.14
Botas, J.15
Rubin, G.M.16
Celniker, S.E.17
-
7
-
-
0031711523
-
Population aggregation analysis of three caviar-producing species of stugeons and implications for the species identification of black caviar
-
Birstein V.J., Doukakis P., Sorkin B., DeSalle R. Population aggregation analysis of three caviar-producing species of stugeons and implications for the species identification of black caviar. Conserv. Biol. 12:1998;766-775
-
(1998)
Conserv. Biol
, vol.12
, pp. 766-775
-
-
Birstein, V.J.1
Doukakis, P.2
Sorkin, B.3
Desalle, R.4
-
8
-
-
0242418246
-
Phylogenetic shadowing of primate sequences to find functional regions of the human genome
-
Boffelli D., McAuliffe J., Ovcharenko D., Lewis K.D., Ovcharenko I., Pachter L., Rubin E.M. Phylogenetic shadowing of primate sequences to find functional regions of the human genome. Science. 299:2003;1391-1394
-
(2003)
Science
, vol.299
, pp. 1391-1394
-
-
Boffelli, D.1
McAuliffe, J.2
Ovcharenko, D.3
Lewis, K.D.4
Ovcharenko, I.5
Pachter, L.6
Rubin, E.M.7
-
10
-
-
0037374617
-
Detection of potato viruses using microarray technology: Towards a generic method for plant viral disease diagnosis
-
Boonham N., Walsh K., Smith P., Madagan K., Graham I., Baker I. Detection of potato viruses using microarray technology: Towards a generic method for plant viral disease diagnosis. J. Virol. Methods. 108:2003;181-187
-
(2003)
J. Virol. Methods
, vol.108
, pp. 181-187
-
-
Boonham, N.1
Walsh, K.2
Smith, P.3
Madagan, K.4
Graham, I.5
Baker, I.6
-
11
-
-
0000367652
-
The limits of amino-acid sequence data in angiosperm phylogenetic reconstruction
-
Bremer K. The limits of amino-acid sequence data in angiosperm phylogenetic reconstruction. Evolution. 42:1988;795-803
-
(1988)
Evolution
, vol.42
, pp. 795-803
-
-
Bremer, K.1
-
12
-
-
1542577332
-
EST analysis in Cycas, the oldest living seed plant
-
Brenner E.D., Stevenson D.W., McCombie W.R., Katari M.S., Rudd S.A., Mayer K.F.X., Pelenchar P.M., Runko S.J., Twigg R.W., Dai G., Martienssen R.A., Benfey P.N., Coruzzi G.M. EST analysis in Cycas, the oldest living seed plant. Genome Biol. 4:2003;R78
-
(2003)
Genome Biol.
, vol.4
, pp. 78
-
-
Brenner, E.D.1
Stevenson, D.W.2
McCombie, W.R.3
Katari, M.S.4
Rudd, S.A.5
Mayer, K.F.X.6
Pelenchar, P.M.7
Runko, S.J.8
Twigg, R.W.9
Dai, G.10
Martienssen, R.A.11
Benfey, P.N.12
Coruzzi, G.M.13
-
14
-
-
0031470387
-
Archaea and the prokaryote-to-eukaryote transition
-
Brown J.R., Doolittle W.F. Archaea and the prokaryote-to-eukaryote transition. Microbiol. Mol. Biol. Rev. 61:1997;456-502
-
(1997)
Microbiol. Mol. Biol. Rev.
, vol.61
, pp. 456-502
-
-
Brown, J.R.1
Doolittle, W.F.2
-
15
-
-
0343208665
-
The impact of rapid gene discovery technology on studies of evolution and biodiversity
-
Washington, DC: John Henry Press
-
Bult C., Blake J.A., Adams M.D., White O., Sutton G., Kerlavage R., Fields C., Venter J.C. The impact of rapid gene discovery technology on studies of evolution and biodiversity. Biodiversity II: Understanding and Protecting Our Biological Resources. 1997;289-300 John Henry Press, Washington, DC
-
(1997)
Biodiversity II: Understanding and Protecting Our Biological Resources
, pp. 289-300
-
-
Bult, C.1
Blake, J.A.2
Adams, M.D.3
White, O.4
Sutton, G.5
Kerlavage, R.6
Fields, C.7
Venter, J.C.8
-
16
-
-
84988042823
-
Comparative genomics: This year's model?
-
Campbell N. Comparative genomics: This year's model? Nature Reviews in Genetics. 5:2004;82-83
-
(2004)
Nature Reviews in Genetics
, vol.5
, pp. 82-83
-
-
Campbell, N.1
-
17
-
-
0031588566
-
High efficiency selection of full-length cDNA by improved biotinylated cap trapper
-
Carninci P., Westover A., Nishiyama Y., Ohsumi T., Itoh M., Nagaoka S., Sasaki N., Okazaki Y., Muramatsu M., Schneider C., Hayashizaki Y. High efficiency selection of full-length cDNA by improved biotinylated cap trapper. DNA Res. 4:1997;61-66
-
(1997)
DNA Res.
, vol.4
, pp. 61-66
-
-
Carninci, P.1
Westover, A.2
Nishiyama, Y.3
Ohsumi, T.4
Itoh, M.5
Nagaoka, S.6
Sasaki, N.7
Okazaki, Y.8
Muramatsu, M.9
Schneider, C.10
Hayashizaki, Y.11
-
18
-
-
0031905770
-
Thermostabilization and thermoactivation of thermolabile enzymes by trehalose and its application for the synthesis of full length cDNA
-
Carninci P., Nishiyama Y., Westover A., Itoh M., Nagaoka S., Sasaki N., Okazaki Y., Muramatsu M., Hayashizaki Y. Thermostabilization and thermoactivation of thermolabile enzymes by trehalose and its application for the synthesis of full length cDNA. Proc. Natl. Acad. Sci. USA. 95:1998;520-524
-
(1998)
Proc. Natl. Acad. Sci. USA
, vol.95
, pp. 520-524
-
-
Carninci, P.1
Nishiyama, Y.2
Westover, A.3
Itoh, M.4
Nagaoka, S.5
Sasaki, N.6
Okazaki, Y.7
Muramatsu, M.8
Hayashizaki, Y.9
-
19
-
-
0029812093
-
Full-length cDNA cloning and determination of mRNA 5′ and 3′ ends by amplification of adaptor-ligated cDNA
-
Chenchik A., Diachenko L., Moqadam F., Tarabykin V., Lukyanov S., Siebert P.D. Full-length cDNA cloning and determination of mRNA 5′ and 3′ ends by amplification of adaptor-ligated cDNA. Biotechniques. 21:1996;526-534
-
(1996)
Biotechniques
, vol.21
, pp. 526-534
-
-
Chenchik, A.1
Diachenko, L.2
Moqadam, F.3
Tarabykin, V.4
Lukyanov, S.5
Siebert, P.D.6
-
20
-
-
0242662461
-
Evolutionary discrimination of mammalian conserved non-genic sequences
-
Dermitzakis E.T., Reymond A., Scamuffa N., Ucla C., Kirkness E., Rossier C., Antonarakis S.E. Evolutionary discrimination of mammalian conserved non-genic sequences. Science. 302:2003;1033-1035
-
(2003)
Science
, vol.302
, pp. 1033-1035
-
-
Dermitzakis, E.T.1
Reymond, A.2
Scamuffa, N.3
Ucla, C.4
Kirkness, E.5
Rossier, C.6
Antonarakis, S.E.7
-
21
-
-
18744395183
-
Numerous potentially functional but non-genic conserved sequences on human chromosome 21
-
Dermitzakis E.T., Reymond A., Lyle R., Scamuffa N., Ucla C., Deutsch S., Stevenson B.J., Flegel V., Bucher P., Jongeneel C.V., Antonarakis S.E. Numerous potentially functional but non-genic conserved sequences on human chromosome 21. Nature. 420:2002;578-582
-
(2002)
Nature
, vol.420
, pp. 578-582
-
-
Dermitzakis, E.T.1
Reymond, A.2
Lyle, R.3
Scamuffa, N.4
Ucla, C.5
Deutsch, S.6
Stevenson, B.J.7
Flegel, V.8
Bucher, P.9
Jongeneel, C.V.10
Antonarakis, S.E.11
-
22
-
-
2442695243
-
Comparison of human chromosome 21 conserved non-genic sequences (CNGs) with the mouse and dog genomes shows that their selective constraint is independent of their genic environment
-
Dermitzakis E.T., Kirkness E., Schwarz S., Birney E., Reymond A., Antonarakis S.E. Comparison of human chromosome 21 conserved non-genic sequences (CNGs) with the mouse and dog genomes shows that their selective constraint is independent of their genic environment. Genome Res. 14:2004;852-859
-
(2004)
Genome Res.
, vol.14
, pp. 852-859
-
-
Dermitzakis, E.T.1
Kirkness, E.2
Schwarz, S.3
Birney, E.4
Reymond, A.5
Antonarakis, S.E.6
-
25
-
-
0031976258
-
Phylogenomics: Improving functional predictions for uncharacterized genes by evolutionary analysis
-
Eisen J.A. Phylogenomics: Improving functional predictions for uncharacterized genes by evolutionary analysis. Genome Res. 8:1998;163-167
-
(1998)
Genome Res.
, vol.8
, pp. 163-167
-
-
Eisen, J.A.1
-
26
-
-
0033669672
-
Horizontal gene transfer among microbial genomes: New insights from complete genome analysis
-
Eisen J.A. Horizontal gene transfer among microbial genomes: New insights from complete genome analysis. Curr. Opin. Genet. Dev. 10:2000;606-611
-
(2000)
Curr. Opin. Genet. Dev.
, vol.10
, pp. 606-611
-
-
Eisen, J.A.1
-
27
-
-
0038518196
-
Phylogenomics: Intersection of evolution and genomics
-
Eisen J.A., Fraser C.M. Phylogenomics: Intersection of evolution and genomics. Science. 300:2003;1706-1707
-
(2003)
Science
, vol.300
, pp. 1706-1707
-
-
Eisen, J.A.1
Fraser, C.M.2
-
28
-
-
0030862610
-
Gastrogenomic delights: A movable feast
-
Eisen J.A., Kaiser D., Myers R.M. Gastrogenomic delights: A movable feast. Nature Med. 3:1997;1076-1078
-
(1997)
Nature Med.
, vol.3
, pp. 1076-1078
-
-
Eisen, J.A.1
Kaiser, D.2
Myers, R.M.3
-
29
-
-
0029157378
-
Evolution of the SNF2 family of proteins: Subfamilies with distinct sequences and functions
-
Eisen J.A., Sweder K.S., Hanawalt P.C. Evolution of the SNF2 family of proteins: Subfamilies with distinct sequences and functions. Nucleic Acids Res. 23:1995;2715-2723
-
(1995)
Nucleic Acids Res.
, vol.23
, pp. 2715-2723
-
-
Eisen, J.A.1
Sweder, K.S.2
Hanawalt, P.C.3
-
30
-
-
0037066542
-
Intra- and interspecific variation in primate gene expression patterns
-
Enard W., Khaitovich P., Klose J., Zöllner S., Heissig F., Giavalisco P., Nieselt-Struwe K., Muchmore E., Varki A., Ravid R., Doxiadis G.M., Bontrop R.E., Pääbo S. Intra- and interspecific variation in primate gene expression patterns. Science. 296:2002;340-343
-
(2002)
Science
, vol.296
, pp. 340-343
-
-
Enard, W.1
Khaitovich, P.2
Klose, J.3
Zöllner, S.4
Heissig, F.5
Giavalisco, P.6
Nieselt-Struwe, K.7
Muchmore, E.8
Varki, A.9
Ravid, R.10
Doxiadis, G.M.11
Bontrop, R.E.12
Pääbo, S.13
-
31
-
-
0031955518
-
Basecalling of automated sequence traces using phred. I. Accuracy assessment
-
Ewing B., Hiller L., Wendl M., Green P. Basecalling of automated sequence traces using phred. I. Accuracy assessment. Genome Res. 8:1998;175-185
-
(1998)
Genome Res.
, vol.8
, pp. 175-185
-
-
Ewing, B.1
Hiller, L.2
Wendl, M.3
Green, P.4
-
33
-
-
0000461280
-
Confidence limits on phylogenies: An approach using the bootstrap
-
Felsenstein J. Confidence limits on phylogenies: An approach using the bootstrap. Evolution. 39:1985;783-791
-
(1985)
Evolution
, vol.39
, pp. 783-791
-
-
Felsenstein, J.1
-
35
-
-
0034178257
-
Homology: A personal view of some of the problems
-
Fitch W.M. Homology: A personal view of some of the problems. Trends Genet. 16:2000;227-234
-
(2000)
Trends Genet.
, vol.16
, pp. 227-234
-
-
Fitch, W.M.1
-
36
-
-
0029653518
-
Whole-genome random sequencing and assembly of Haemophilus influenzae Rd
-
Fleischmann R.D., Adams M.D., White O., Clayton R.A., Kirkness E.F., Kerlavage A.R., Bult C.J., Tomb J. -F., Dougherty B.A., Merrick J.M., McKenney K., Sutton G., FitzHugh W., Fields C., Gocayne J.D., Scott J., Shirley R., Liu L.-I., Glodek A., Kelley J.M., Weidman J.F., Phillips C.A., Spriggs T., Hedblom E., Cotton M.D., Utterback T.R., Hanna M.C., Nguyen D.T., Saudek D.M., Brandon R.C., Fine L.D., Fritchman J.L., N. Geoghagen S.M., Gnehm C.L., McDonald L.A., Small K.V., Fraser C.M., Smith H.O., Venter J.C. Whole-genome random sequencing and assembly of Haemophilus influenzae Rd. Science. 269:1995;496-512
-
(1995)
Science
, vol.269
, pp. 496-512
-
-
Fleischmann, R.D.1
Adams, M.D.2
White, O.3
Clayton, R.A.4
Kirkness, E.F.5
Kerlavage, A.R.6
Bult, C.J.7
Tomb, J.-F.8
Dougherty, B.A.9
Merrick, J.M.10
McKenney, K.11
Sutton, G.12
Fitzhugh, W.13
Fields, C.14
Gocayne, J.D.15
Scott, J.16
Shirley, R.17
Liu, L.-I.18
Glodek, A.19
Kelley, J.M.20
Weidman, J.F.21
Phillips, C.A.22
Spriggs, T.23
Hedblom, E.24
Cotton, M.D.25
Utterback, T.R.26
Hanna, M.C.27
Nguyen, D.T.28
Saudek, D.M.29
Brandon, R.C.30
Fine, L.D.31
Fritchman, J.L.32
Geoghagen S M, N.33
Gnehm, C.L.34
McDonald, L.A.35
Small, K.V.36
Fraser, C.M.37
Smith, H.O.38
Venter, J.C.39
more..
-
38
-
-
0038785934
-
Combined support for wholesale taxic atavism in gavialine crocodylians
-
Gatesy J., Amato G., Norell M., DeSalle R., Hayashi C. Combined support for wholesale taxic atavism in gavialine crocodylians. Syst. Biol. 52:2003;403-422
-
(2003)
Syst. Biol.
, vol.52
, pp. 403-422
-
-
Gatesy, J.1
Amato, G.2
Norell, M.3
Desalle, R.4
Hayashi, C.5
-
39
-
-
0032805771
-
Corroboration among data sets in simultaneous analysis: Hidden support for phylogenetic relationships among higher level Artiodactyl taxa
-
Gatesy J.E., O'Grady P.M., Baker R. Corroboration among data sets in simultaneous analysis: Hidden support for phylogenetic relationships among higher level Artiodactyl taxa. Cladistics. 15:1999;271-313
-
(1999)
Cladistics
, vol.15
, pp. 271-313
-
-
Gatesy, J.E.1
O'Grady, P.M.2
Baker, R.3
-
40
-
-
0031955116
-
Consed: A graphical tool for sequence finishing
-
Gordon D., Abanjian C., Green P. Consed: A graphical tool for sequence finishing. Genome Res. 8:1998;195-202
-
(1998)
Genome Res.
, vol.8
, pp. 195-202
-
-
Gordon, D.1
Abanjian, C.2
Green, P.3
-
41
-
-
84984934752
-
Resequencing and mutational analysis using oligonucleotide microarrays
-
Hacia J.C. Resequencing and mutational analysis using oligonucleotide microarrays. Nat. Genet. 21:(Suppl.):1999;42-47
-
(1999)
Nat. Genet.
, vol.21
, Issue.SUPPL.
, pp. 42-47
-
-
Hacia, J.C.1
-
42
-
-
0344719474
-
SNP discovery in interspecific hybrids of catfish by comparative EST analysis
-
He C., Chen L., Simmons M., Li P., Kim S., Liu Z.J. SNP discovery in interspecific hybrids of catfish by comparative EST analysis. Anim. Genet. 34:2003;445-448
-
(2003)
Anim. Genet.
, vol.34
, pp. 445-448
-
-
He, C.1
Chen, L.2
Simmons, M.3
Li, P.4
Kim, S.5
Liu, Z.J.6
-
44
-
-
0042531561
-
Barcoding animal life: Cytochrome c oxidase subunit 1 divergences among closely related species
-
Hebert P.D.N., Ratnasingham S., DeWaard J.R. Barcoding animal life: Cytochrome c oxidase subunit 1 divergences among closely related species. Proc. R. Soc. Lond. B Suppl. 270:2003b;S96-S99
-
(2003)
Proc. R. Soc. Lond. B Suppl.
, vol.270
-
-
Hebert, P.D.N.1
Ratnasingham, S.2
Dewaard, J.R.3
-
45
-
-
0003671904
-
-
Sunderland, MA: Sinauer Associates, Inc.
-
Hillis D.M., Moritz C., Mable B.K. "Molecular Systematics," 2nd Ed.:1996;Sinauer Associates, Inc., Sunderland, MA
-
(1996)
"Molecular Systematics," 2nd Ed.
-
-
Hillis, D.M.1
Moritz, C.2
Mable, B.K.3
-
46
-
-
0141742352
-
Application of DNA microarrays to study the evolutionary genomics of Yersinia pestis and Yersinia pseudotuberculosis
-
Hinchliffe S.J., Isherwood K.E., Stabler R.A., Prentice M.B., Rakin A., Nichols R.A., Oyston P.C., Hinds J., Titball R.W., Wren B.W. Application of DNA microarrays to study the evolutionary genomics of Yersinia pestis and Yersinia pseudotuberculosis. Genome Res. 13:2003;2018-2029
-
(2003)
Genome Res.
, vol.13
, pp. 2018-2029
-
-
Hinchliffe, S.J.1
Isherwood, K.E.2
Stabler, R.A.3
Prentice, M.B.4
Rakin, A.5
Nichols, R.A.6
Oyston, P.C.7
Hinds, J.8
Titball, R.W.9
Wren, B.W.10
-
47
-
-
0032849859
-
CAP3: A DNA sequence assembly program
-
Huan X., Madan A. CAP3: A DNA sequence assembly program. Genome Res. 9:1999;868-877
-
(1999)
Genome Res.
, vol.9
, pp. 868-877
-
-
Huan, X.1
Madan, A.2
-
48
-
-
0002410257
-
Parametric bootstrapping in molecular phylogenetics: Applications and performance
-
J.D. Ferraris, & S.R. Palumbi. New York: Wiley & Liss
-
Huelsenbeck J.P., Hillis D.M., Jones R. Parametric bootstrapping in molecular phylogenetics: Applications and performance. Ferraris J.D., Palumbi S.R. "Molecular Zoology: Advances, Strategies, and Protocols" 1996;19-46 Wiley & Liss, New York
-
(1996)
Molecular Zoology: Advances, Strategies, and Protocols
, pp. 19-46
-
-
Huelsenbeck, J.P.1
Hillis, D.M.2
Jones, R.3
-
50
-
-
4444291843
-
Detection of large-scale variation in the human genome
-
Iafrate A.J., Feuk L., Rivera M.N., Listewnik M.L., Donahoe P.K., Qi Y., Scherer S.W., Lee C. Detection of large-scale variation in the human genome. Nat. Genet. 36:2004;949-952
-
(2004)
Nat. Genet.
, vol.36
, pp. 949-952
-
-
Iafrate, A.J.1
Feuk, L.2
Rivera, M.N.3
Listewnik, M.L.4
Donahoe, P.K.5
Qi, Y.6
Scherer, S.W.7
Lee, C.8
-
51
-
-
19944411294
-
Theory and practice of parallel direct optimization
-
R. DeSalle, G. Giribet, & W. Wheeler. Basel: Birkhauser Verlag
-
Janies D.A., Wheeler W.C. Theory and practice of parallel direct optimization. DeSalle R., Giribet G., Wheeler W. "Techniques in Molecular Systematics and Evolution" 2002;Birkhauser Verlag, Basel
-
(2002)
Techniques in Molecular Systematics and Evolution
-
-
Janies, D.A.1
Wheeler, W.C.2
-
52
-
-
0035002725
-
Efficiency of parallel direct optimization
-
Janies D., Wheeler W. Efficiency of parallel direct optimization. Cladistics. 17:2001;S71-S82
-
(2001)
Cladistics
, vol.17
-
-
Janies, D.1
Wheeler, W.2
-
53
-
-
0036499057
-
SHOT: A webserver for the construction of genome phylogenies
-
Korbel J.O., Snel B., Huynen M.A., Bork P. SHOT: A webserver for the construction of genome phylogenies. Trends Genet. 18:2002;158-162
-
(2002)
Trends Genet.
, vol.18
, pp. 158-162
-
-
Korbel, J.O.1
Snel, B.2
Huynen, M.A.3
Bork, P.4
-
54
-
-
0347033327
-
EST analysis of the cnidarian Acropora millepora reveals extensive gene loss and rapid sequence divergence in the model invertebrates
-
Kortschak R.D., Samuel G., Saint R., Miller D.J. EST analysis of the cnidarian Acropora millepora reveals extensive gene loss and rapid sequence divergence in the model invertebrates. Curr. Biol. 13:2003;2190-2195
-
(2003)
Curr. Biol.
, vol.13
, pp. 2190-2195
-
-
Kortschak, R.D.1
Samuel, G.2
Saint, R.3
Miller, D.J.4
-
55
-
-
0034992826
-
The closest BLAST hit is often not the nearest neighbor
-
Koski J., Golding B. The closest BLAST hit is often not the nearest neighbor. J. Mol. Evol. 52:2001;540-542
-
(2001)
J. Mol. Evol.
, vol.52
, pp. 540-542
-
-
Koski, J.1
Golding, B.2
-
56
-
-
0142124263
-
Gene loss, protein sequence divergence, gene dispensability, expression level, and interactivity are correlated in eukaryotic evolution
-
Krylov D.M., Wolf Y.I., Rogozin I.B., Koonin E.V. Gene loss, protein sequence divergence, gene dispensability, expression level, and interactivity are correlated in eukaryotic evolution. Genome Res. 13:2003;2229-2235
-
(2003)
Genome Res.
, vol.13
, pp. 2229-2235
-
-
Krylov, D.M.1
Wolf, Y.I.2
Rogozin, I.B.3
Koonin, E.V.4
-
57
-
-
0037291466
-
Partitioned likelihood support and the evaluation of data set conflict
-
Lee M.S.Y., Hugall A.F. Partitioned likelihood support and the evaluation of data set conflict. Syst. Biol. 52:2003;11-22
-
(2003)
Syst. Biol.
, vol.52
, pp. 11-22
-
-
Lee, M.S.Y.1
Hugall, A.F.2
-
58
-
-
4444242992
-
Genomic segmental polymorphisms in inbred mouse strains
-
Li J., Jiang T., Mao J.-H., Balmain A., Peterson L., Harris C., Rao P.H., Havlak P., Gibbs R., Cai W.-W. Genomic segmental polymorphisms in inbred mouse strains. Nat. Genet. 36:2004;952-955
-
(2004)
Nat. Genet.
, vol.36
, pp. 952-955
-
-
Li, J.1
Jiang, T.2
Mao, J.-H.3
Balmain, A.4
Peterson, L.5
Harris, C.6
Rao, P.H.7
Havlak, P.8
Gibbs, R.9
Cai, W.-W.10
-
59
-
-
0034204044
-
Gene index analysis of the human genome estimates approximately 120,000 genes
-
Liang F., Holt I., Pertea G., Karamycheva S., Salzberg S.L., Quackenbush J. Gene index analysis of the human genome estimates approximately 120,000 genes. Nat. Genet. 25:2000;239-240
-
(2000)
Nat. Genet.
, vol.25
, pp. 239-240
-
-
Liang, F.1
Holt, I.2
Pertea, G.3
Karamycheva, S.4
Salzberg, S.L.5
Quackenbush, J.6
-
60
-
-
0027468779
-
Cloning the differences between two complex genomes
-
Lisitsyn N., Lisitsyn N., Wigler M. Cloning the differences between two complex genomes. Science. 258:1993;946-951
-
(1993)
Science
, vol.258
, pp. 946-951
-
-
Lisitsyn, N.1
Lisitsyn, N.2
Wigler, M.3
-
61
-
-
0028834086
-
Oligonucleotides with fluorescent dyes at opposite ends provide a quenched probe system useful for detecting PCR product and nucleic acid hybridization
-
Livak K.J., Flood S.A.J., Marmaro J., Giusti W., Deetz K. Oligonucleotides with fluorescent dyes at opposite ends provide a quenched probe system useful for detecting PCR product and nucleic acid hybridization. PCR Methods and Applications. 4:1995;357-362
-
(1995)
PCR Methods and Applications
, vol.4
, pp. 357-362
-
-
Livak, K.J.1
Flood, S.A.J.2
Marmaro, J.3
Giusti, W.4
Deetz, K.5
-
62
-
-
0037351987
-
Large-scale variation among human and great ape genomes determined by array comparative genomic hybridization
-
Locke D.P., Segraves R., Carbone L., Archidiacono N., Albertson D.G., Pinkel D., Eichler E.E. Large-scale variation among human and great ape genomes determined by array comparative genomic hybridization. Genome Res. 13:2003;347-357
-
(2003)
Genome Res.
, vol.13
, pp. 347-357
-
-
Locke, D.P.1
Segraves, R.2
Carbone, L.3
Archidiacono, N.4
Albertson, D.G.5
Pinkel, D.6
Eichler, E.E.7
-
63
-
-
10744231187
-
Representational oligonucleotide microarray analysis: A high-resolution method to detect genome copy number variation
-
Lucito R., Healy J., Alexander J., Reiner A., Esposito D., Chi M., Rodgers L., Brady A., Sebat J., Troge J., West J.A., Rostan S., Nguyen K.C., Powers S., Ye K.Q., Olshen A., Venkatraman E., Norton L., Wigler M. Representational oligonucleotide microarray analysis: A high-resolution method to detect genome copy number variation. Genome Res. 13:2003;2291-2305
-
(2003)
Genome Res.
, vol.13
, pp. 2291-2305
-
-
Lucito, R.1
Healy, J.2
Alexander, J.3
Reiner, A.4
Esposito, D.5
Chi, M.6
Rodgers, L.7
Brady, A.8
Sebat, J.9
Troge, J.10
West, J.A.11
Rostan, S.12
Nguyen, K.C.13
Powers, S.14
Ye, K.Q.15
Olshen, A.16
Venkatraman, E.17
Norton, L.18
Wigler, M.19
-
64
-
-
0032515994
-
Genetic analysis using genomic representations
-
Lucito R., Nakimura M., West J.A., Han Y., Chin K., Jensen K., McCombie R., Gray J.W., Wigler M. Genetic analysis using genomic representations. Proc. Natl. Acad. Sci. USA. 95:1998;4487-4492
-
(1998)
Proc. Natl. Acad. Sci. USA
, vol.95
, pp. 4487-4492
-
-
Lucito, R.1
Nakimura, M.2
West, J.A.3
Han, Y.4
Chin, K.5
Jensen, K.6
McCombie, R.7
Gray, J.W.8
Wigler, M.9
-
65
-
-
0031012314
-
Comparative anchor tagged sequences (CATS) for integrative mapping of mammalian genomes
-
Lyons L.A., Laughlin T.F., Copeland N.G., Jenkins N.A., Womack J.E., O'Brien S.J. Comparative anchor tagged sequences (CATS) for integrative mapping of mammalian genomes. Nat. Genet. 15:1997;47-56
-
(1997)
Nat. Genet.
, vol.15
, pp. 47-56
-
-
Lyons, L.A.1
Laughlin, T.F.2
Copeland, N.G.3
Jenkins, N.A.4
Womack, J.E.5
O'Brien, S.J.6
-
66
-
-
2442720182
-
The Human MitoChip: A high-throughput sequencing microarray for mitochondrial mutation detection
-
Maitra A., Cohen Y., Gillespie S.E., Mambo E., Fukushima N., Hoque M.O., Shah N., Goggins M., Califano J., Sidransky D., Chakravarti A. The Human MitoChip: A high-throughput sequencing microarray for mitochondrial mutation detection. Genome Res. 14:2004;812-819
-
(2004)
Genome Res.
, vol.14
, pp. 812-819
-
-
Maitra, A.1
Cohen, Y.2
Gillespie, S.E.3
Mambo, E.4
Fukushima, N.5
Hoque, M.O.6
Shah, N.7
Goggins, M.8
Califano, J.9
Sidransky, D.10
Chakravarti, A.11
-
68
-
-
0345129990
-
Multiplex detection of single-nucleotide variations using molecular beacons
-
Marras S.A.E., Kramer F.R., Tyagi S. Multiplex detection of single-nucleotide variations using molecular beacons. Genet. Anal. 14:1999;151-156
-
(1999)
Genet. Anal.
, vol.14
, pp. 151-156
-
-
Marras, S.A.E.1
Kramer, F.R.2
Tyagi, S.3
-
69
-
-
0028213438
-
Oligo-capping: A simple method to replace the cap structure of eukaryotic mRNAs with oligoribonucleotides
-
Maruyama K., Sugano S. Oligo-capping: A simple method to replace the cap structure of eukaryotic mRNAs with oligoribonucleotides. Gene. 138:1994;171-174
-
(1994)
Gene
, vol.138
, pp. 171-174
-
-
Maruyama, K.1
Sugano, S.2
-
70
-
-
0034575479
-
Sequence variation in genes and genomic DNA: Methods for large-scale analysis
-
Mir K.U., Southern E.M. Sequence variation in genes and genomic DNA: Methods for large-scale analysis. Annu. Rev. Genomics Human Genet. 1:2000;329-360
-
(2000)
Annu. Rev. Genomics Human Genet.
, vol.1
, pp. 329-360
-
-
Mir, K.U.1
Southern, E.M.2
-
72
-
-
0022965004
-
Specific enzymatic amplification of DNA in vitro: The polymerase chain reaction
-
Mullis K., Faloona F., Scharf S., Saki R., Horn G., Erlich H. Specific enzymatic amplification of DNA in vitro: The polymerase chain reaction. Cold Spring Harbor Symposia on Quantitative Biology. 51:1986;263
-
(1986)
Cold Spring Harbor Symposia on Quantitative Biology
, vol.51
, pp. 263
-
-
Mullis, K.1
Faloona, F.2
Scharf, S.3
Saki, R.4
Horn, G.5
Erlich, H.6
-
73
-
-
0035861441
-
Resolution of the early placental mammal radiation using Bayesian phylogenetics
-
Murphy W.J., Eizirik E., O'Brien S.J., Madsen O., Scally M., Douady C.J., Teeling E., Ryder O.A., Stanhope M.J., de Jong W.W., Springer M.S. Resolution of the early placental mammal radiation using Bayesian phylogenetics. Science. 294:2001a;2348-2351
-
(2001)
Science
, vol.294
, pp. 2348-2351
-
-
Murphy, W.J.1
Eizirik, E.2
O'Brien, S.J.3
Madsen, O.4
Scally, M.5
Douady, C.J.6
Teeling, E.7
Ryder, O.A.8
Stanhope, M.J.9
De Jong, W.W.10
Springer, M.S.11
-
74
-
-
0035252080
-
Molecular phylogenetics and the origins of placental mammals
-
Murphy W.J., Eizirik E., Johnson W.J., Zhang Y.P., Ryder O.A., O'Brien S.J. Molecular phylogenetics and the origins of placental mammals. Nature. 409:2001b;614-618
-
(2001)
Nature
, vol.409
, pp. 614-618
-
-
Murphy, W.J.1
Eizirik, E.2
Johnson, W.J.3
Zhang, Y.P.4
Ryder, O.A.5
O'Brien, S.J.6
-
75
-
-
0142043938
-
Phylogeny of plastids based on cladistic analysis of gene loss inferred from complete plastid genome sequences
-
Nozaki H., Ohta N., Matsuzaki M., Misumi O., Kuroiwa T. Phylogeny of plastids based on cladistic analysis of gene loss inferred from complete plastid genome sequences. J. Mol. Evol. 57:2003;377-382
-
(2003)
J. Mol. Evol.
, vol.57
, pp. 377-382
-
-
Nozaki, H.1
Ohta, N.2
Matsuzaki, M.3
Misumi, O.4
Kuroiwa, T.5
-
76
-
-
0001829453
-
Nucleic acids II: The polymerase chain reaction
-
D. Hillis, & C. Moritz. Sunderland, MA: Sinauer
-
Palumbi S.R. Nucleic acids II: The polymerase chain reaction. Hillis D., Moritz C. "Molecular Systematics" 2nd Ed.:1995;205-247 Sinauer, Sunderland, MA
-
(1995)
"Molecular Systematics" 2nd Ed.
, pp. 205-247
-
-
Palumbi, S.R.1
-
77
-
-
0028354921
-
Contrasting population structure from nuclear intron sequences and mtDNA of humpback whales
-
Palumbi S.R., Baker C.S. Contrasting population structure from nuclear intron sequences and mtDNA of humpback whales. Mol. Biol. Evol. 11:1994;426-435
-
(1994)
Mol. Biol. Evol.
, vol.11
, pp. 426-435
-
-
Palumbi, S.R.1
Baker, C.S.2
-
78
-
-
0023989064
-
Improved tools for biological sequence comparison
-
Pearson W.R., Lipman D.J. Improved tools for biological sequence comparison. Proc. Natl. Acad. Sci. USA. 4:1988;2444-2448
-
(1988)
Proc. Natl. Acad. Sci. USA
, vol.4
, pp. 2444-2448
-
-
Pearson, W.R.1
Lipman, D.J.2
-
79
-
-
1942453353
-
Development of microarray-based diagnostics of voles and shrews for use in biodiversity monitoring studies, and evaluation of mitochondrial cytochrome oxidase I vs. cytochrome b as genetic markers
-
Pfunder M., Holzgang O., Frey J.E. Development of microarray-based diagnostics of voles and shrews for use in biodiversity monitoring studies, and evaluation of mitochondrial cytochrome oxidase I vs. cytochrome b as genetic markers. Mol. Ecol. 13:2004;1277-1285
-
(2004)
Mol. Ecol.
, vol.13
, pp. 1277-1285
-
-
Pfunder, M.1
Holzgang, O.2
Frey, J.E.3
-
81
-
-
19944371878
-
Sub-genomic sequencing projects for phylogenetic analysis
-
R. DeSalle, G. Giribet, & W. Wheeler. Birkhauser
-
Phillips A. Sub-genomic sequencing projects for phylogenetic analysis. DeSalle R., Giribet G., Wheeler W. "Techniques in Molecular Systematics and Evolution" 2002;132-146 Birkhauser
-
(2002)
Techniques in Molecular Systematics and Evolution
, pp. 132-146
-
-
Phillips, A.1
-
82
-
-
0038617707
-
The widespread colonization island of Actinobacillus actinomycetemcomitans
-
Planet P.J., Kachlany S.C., Fine D.H., DeSalle R., Figurski D.H. The widespread colonization island of Actinobacillus actinomycetemcomitans. Nat. Genet. 34:2003;193-198
-
(2003)
Nat. Genet.
, vol.34
, pp. 193-198
-
-
Planet, P.J.1
Kachlany, S.C.2
Fine, D.H.3
Desalle, R.4
Figurski, D.H.5
-
83
-
-
10744232510
-
Generation, annotation, evolutionary analysis, and database integration of 20,000 unique sea urchin EST clusters
-
Poustka A.J., Groth D., Hennig S., Thamm S., Cameron A., Beck A., Reinhardt R., Herwig R., Panopoulou G., Lehrach H. Generation, annotation, evolutionary analysis, and database integration of 20,000 unique sea urchin EST clusters. Genome Res. 13:2003;2736-2746
-
(2003)
Genome Res.
, vol.13
, pp. 2736-2746
-
-
Poustka, A.J.1
Groth, D.2
Hennig, S.3
Thamm, S.4
Cameron, A.5
Beck, A.6
Reinhardt, R.7
Herwig, R.8
Panopoulou, G.9
Lehrach, H.10
-
84
-
-
0038752613
-
The genome sequence of Bacillus anthracis Ames and comparison to closely related bacteria
-
Read T.D., Peterson S.N., Tourasse N., Baillie L.W., Paulsen I.T., Nelson K.E., Tettelin H., Fouts D.E., Eisen J.A., Gill S.R., Holtzapple E.K., Okstad O.A., Helgason E., Rilstone J., Wu M., Kolonay J.F., Beanan M.J., Dodson R.J., Brinkac L.M., Gwinn M., DeBoy R.T., Madpu R., Daugherty S.C., Durkin A.S., Haft D.H., Nelson W.C., Peterson J.D., Pop M., Khouri H.M., Radune D., Benton J.L., Mahamoud Y., Jiang L., Hance I.R., Weidman J.F., Berry K.J., Plaut White O., Salzberg S.L., Thomason B., Friedlander A.M., Koehler T.M., Hanna P.C., Kolsto A.B., Fraser C.M. The genome sequence of Bacillus anthracis Ames and comparison to closely related bacteria. Nature. 423:2003;81-86
-
(2003)
Nature
, vol.423
, pp. 81-86
-
-
Read, T.D.1
Peterson, S.N.2
Tourasse, N.3
Baillie, L.W.4
Paulsen, I.T.5
Nelson, K.E.6
Tettelin, H.7
Fouts, D.E.8
Eisen, J.A.9
Gill, S.R.10
Holtzapple, E.K.11
Okstad, O.A.12
Helgason, E.13
Rilstone, J.14
Wu, M.15
Kolonay, J.F.16
Beanan, M.J.17
Dodson, R.J.18
Brinkac, L.M.19
Gwinn, M.20
Deboy, R.T.21
Madpu, R.22
Daugherty, S.C.23
Durkin, A.S.24
Haft, D.H.25
Nelson, W.C.26
Peterson, J.D.27
Pop, M.28
Khouri, H.M.29
Radune, D.30
Benton, J.L.31
Mahamoud, Y.32
Jiang, L.33
Hance, I.R.34
Weidman, J.F.35
Berry, K.J.36
Plaut White, O.37
Salzberg, S.L.38
Thomason, B.39
Friedlander, A.M.40
Koehler, T.M.41
Hanna, P.C.42
Kolsto, A.B.43
Fraser, C.M.44
more..
-
85
-
-
0037313182
-
Evolution of gene expression in the Drosophila melanogaster subgroup
-
Rifkin S.A., Kim J., White K.P. Evolution of gene expression in the Drosophila melanogaster subgroup. Nat. Genet. 33:2003;138-144
-
(2003)
Nat. Genet.
, vol.33
, pp. 138-144
-
-
Rifkin, S.A.1
Kim, J.2
White, K.P.3
-
86
-
-
4544313053
-
The ring of life provides evidence for a genome fusion origin of eukaryotes
-
Rivera M.C., Lake J.A. The ring of life provides evidence for a genome fusion origin of eukaryotes. Nature. 432:2004;152-155
-
(2004)
Nature
, vol.432
, pp. 152-155
-
-
Rivera, M.C.1
Lake, J.A.2
-
87
-
-
0242365676
-
Genome-scale approaches to resolving incongruence in molecular phylogenies
-
Rokas A., Williams B.L., King N., Carroll S.B. Genome-scale approaches to resolving incongruence in molecular phylogenies. Nature. 425:2003;798-804
-
(2003)
Nature
, vol.425
, pp. 798-804
-
-
Rokas, A.1
Williams, B.L.2
King, N.3
Carroll, S.B.4
-
88
-
-
0041386108
-
MrBayes 3: Bayesian phylogenetic inference under mixed models
-
Ronquist F., Huelsenbeck J.P. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics. 19:2003;1572-1574
-
(2003)
Bioinformatics
, vol.19
, pp. 1572-1574
-
-
Ronquist, F.1
Huelsenbeck, J.P.2
-
89
-
-
0042232552
-
Expressed sequence tags: Alternative or complement to whole genome sequences?
-
Rudd S. Expressed sequence tags: Alternative or complement to whole genome sequences? Trends Plant Sci. 8:2003;321-328
-
(2003)
Trends Plant Sci.
, vol.8
, pp. 321-328
-
-
Rudd, S.1
-
90
-
-
0023850178
-
Primer-directed enzymatic amplification of DNA with a thermostable DNA polymerase
-
Saiki R.K., Gelfand D.H., Stoffel S., Scharf S.J., Higuchi R., Horn G.T., Mullis K.B., Erlich H.A. Primer-directed enzymatic amplification of DNA with a thermostable DNA polymerase. Science. 239:1988;487
-
(1988)
Science
, vol.239
, pp. 487
-
-
Saiki, R.K.1
Gelfand, D.H.2
Stoffel, S.3
Scharf, S.J.4
Higuchi, R.5
Horn, G.T.6
Mullis, K.B.7
Erlich, H.A.8
-
91
-
-
0036379159
-
An automated phylogenetic key for classifying homeoboxes
-
Sarkar I.N., Thornton J.W., Planet P.J., Figurski D.H., Schierwater B., DeSalle R. An automated phylogenetic key for classifying homeoboxes. Mol. Phylogenet. Evol. 24:2002;388-399
-
(2002)
Mol. Phylogenet. Evol.
, vol.24
, pp. 388-399
-
-
Sarkar, I.N.1
Thornton, J.W.2
Planet, P.J.3
Figurski, D.H.4
Schierwater, B.5
Desalle, R.6
-
92
-
-
0344861871
-
A decade of progress in plant molecular phylogenetics
-
Savolainen V., Chase M.W. A decade of progress in plant molecular phylogenetics. Trends Genet. 19:2003;717-724
-
(2003)
Trends Genet.
, vol.19
, pp. 717-724
-
-
Savolainen, V.1
Chase, M.W.2
-
93
-
-
3242808027
-
Large-scale copy number polymorphism in the human genome
-
Sebat J., Lakshmi B., Troge J., Alexander J., Young J., Lundin P., Månér S., Massa H., Walker M., Chi M., Navin N., Lucito R., Healy J., Hicks J., Ye K., Reiner A., Gilliam T.C., Trask B., Patterson N., Zetterberg A., Wigler M. Large-scale copy number polymorphism in the human genome. Science. 305:2004;525-528
-
(2004)
Science
, vol.305
, pp. 525-528
-
-
Sebat, J.1
Lakshmi, B.2
Troge, J.3
Alexander, J.4
Young, J.5
Lundin, P.6
Månér, S.7
Massa, H.8
Walker, M.9
Chi, M.10
Navin, N.11
Lucito, R.12
Healy, J.13
Hicks, J.14
Ye, K.15
Reiner, A.16
Gilliam, T.C.17
Trask, B.18
Patterson, N.19
Zetterberg, A.20
Wigler, M.21
more..
-
94
-
-
0032900532
-
Genome phylogeny based on gene content
-
Snel B., Bork P., Huynen M. Genome phylogeny based on gene content. Nat. Genet. 21:1999;108-110
-
(1999)
Nat. Genet.
, vol.21
, pp. 108-110
-
-
Snel, B.1
Bork, P.2
Huynen, M.3
-
95
-
-
0036143446
-
Genomes in flux: The evolution of archaeal and protobacterial gene content
-
Snel B., Bork P., Huynen M. Genomes in flux: The evolution of archaeal and protobacterial gene content. Genome Res. 12:2002;17-25
-
(2002)
Genome Res.
, vol.12
, pp. 17-25
-
-
Snel, B.1
Bork, P.2
Huynen, M.3
-
97
-
-
0029962816
-
DNA chips: Analyzing sequence by hybridization to oligonucleotides on a large scale
-
Southern E.M. DNA chips: Analyzing sequence by hybridization to oligonucleotides on a large scale. Trends Genet. 12:1996;110-115
-
(1996)
Trends Genet.
, vol.12
, pp. 110-115
-
-
Southern, E.M.1
-
98
-
-
0035927649
-
Phylogenetic analyses do not support horizontal gene transfers from bacteria to vertebrates
-
Stanhope M.J., Lupas A., Italia M.J., Koretke K.K., Volker C., Brown J.R. Phylogenetic analyses do not support horizontal gene transfers from bacteria to vertebrates. Nature. 411:2001;940-944
-
(2001)
Nature
, vol.411
, pp. 940-944
-
-
Stanhope, M.J.1
Lupas, A.2
Italia, M.J.3
Koretke, K.K.4
Volker, C.5
Brown, J.R.6
-
99
-
-
0141793707
-
Taxonomy, DNA, and the bar code of life
-
Stoeckle M. Taxonomy, DNA, and the bar code of life. BioScience. 53:2003;2-3
-
(2003)
BioScience
, vol.53
, pp. 2-3
-
-
Stoeckle, M.1
-
101
-
-
0036788174
-
Comparison of EST libraries from seven beetle species: Towards a framework for phylogenomics of the Coleoptera
-
Theodorides K., De Riva A., Gómez-Zurita J., Foster P.G., Vogler A.P. Comparison of EST libraries from seven beetle species: Towards a framework for phylogenomics of the Coleoptera. Insect Mol. Biol. 11:2002;467-475
-
(2002)
Insect Mol. Biol.
, vol.11
, pp. 467-475
-
-
Theodorides, K.1
De Riva, A.2
Gómez-Zurita, J.3
Foster, P.G.4
Vogler, A.P.5
-
102
-
-
0041465867
-
Comparative analyses of multi-species sequences from targeted genomic regions
-
Thomas J.W., Touchman J.W., Blakesley R.W., Bouffard G.G., Beckstrom-Sternberg S.M., Margulies E.H., Blanchette M., Siepel A.C., Thomas P.J., McDowell J.C., Maskeri B., Hansen N.F., Schwartz M.S., Weber R.J., Kent W.J., Karolchik D., Bruen T.C., Bevan R., Cutler D.J., Schwartz S., Elnitski L., Idol J.R., Prasad A.B., Lee-Lin S.-Q., Maduro V.V.B., Summers T.J., Portnoy M.E., Dietrich N.L., Akhter N., Ayele K., Benjamin B., Cariaga K., Brinkley C.P., Brooks S.Y., Granite S., Guan X., Gupta J., Haghighi P., Ho S.-L., Huang M.C., Karlins E., Laric P.L., Legaspi R., Lim M.J., Maduro Q.L., Masiello C.A., Mastrian S.D., McCloskey J.C., Pearson R., Stantripop S., Tiongson E.E., Tran J.T., Tsurgeon C., Vogt J.L., Walker M.A., Wetherby K.D., Wiggins L.S., Young A.C., Zhang L.-H., Osoegawa K., Zhu B., Zhao B., Shu C.L., de Jong P.J., Lawrence C.E., Smit A.F., Chakravarti A., Haussler C., Green P., Miller M., Green E.D. Comparative analyses of multi-species sequences from targeted genomic regions. Nature. 424:2003;788-793
-
(2003)
Nature
, vol.424
, pp. 788-793
-
-
Thomas, J.W.1
Touchman, J.W.2
Blakesley, R.W.3
Bouffard, G.G.4
Beckstrom-Sternberg, S.M.5
Margulies, E.H.6
Blanchette, M.7
Siepel, A.C.8
Thomas, P.J.9
McDowell, J.C.10
Maskeri, B.11
Hansen, N.F.12
Schwartz, M.S.13
Weber, R.J.14
Kent, W.J.15
Karolchik, D.16
Bruen, T.C.17
Bevan, R.18
Cutler, D.J.19
Schwartz, S.20
Elnitski, L.21
Idol, J.R.22
Prasad, A.B.23
Lee-Lin, S.-Q.24
Maduro, V.V.B.25
Summers, T.J.26
Portnoy, M.E.27
Dietrich, N.L.28
Akhter, N.29
Ayele, K.30
Benjamin, B.31
Cariaga, K.32
Brinkley, C.P.33
Brooks, S.Y.34
Granite, S.35
Guan, X.36
Gupta, J.37
Haghighi, P.38
Ho, S.-L.39
Huang, M.C.40
Karlins, E.41
Laric, P.L.42
Legaspi, R.43
Lim, M.J.44
Maduro, Q.L.45
Masiello, C.A.46
Mastrian, S.D.47
McCloskey, J.C.48
Pearson, R.49
Stantripop, S.50
Tiongson, E.E.51
Tran, J.T.52
Tsurgeon, C.53
Vogt, J.L.54
Walker, M.A.55
Wetherby, K.D.56
Wiggins, L.S.57
Young, A.C.58
Zhang, L.-H.59
Osoegawa, K.60
Zhu, B.61
Zhao, B.62
Shu, C.L.63
De Jong, P.J.64
Lawrence, C.E.65
Smit, A.F.66
Chakravarti, A.67
Haussler, C.68
Green, P.69
Miller, M.70
Green, E.D.71
more..
-
103
-
-
0036468881
-
Vertebrate genome sequencing: Building a backbone for comparative genomics
-
Thomas J.W., Touchman J.W. Vertebrate genome sequencing: Building a backbone for comparative genomics. Trends Genet. 18:2002;104-108
-
(2002)
Trends Genet.
, vol.18
, pp. 104-108
-
-
Thomas, J.W.1
Touchman, J.W.2
-
104
-
-
0033168097
-
A comprehensive comparison of multiple sequence alignment programs
-
Thompson J.D., Plewniak F., Poch O. A comprehensive comparison of multiple sequence alignment programs. Nucleic Acids Res. 27:1999;2682-2690
-
(1999)
Nucleic Acids Res.
, vol.27
, pp. 2682-2690
-
-
Thompson, J.D.1
Plewniak, F.2
Poch, O.3
-
105
-
-
0029670262
-
Molecular beacons: Probes that fluoresce upon hybridization
-
Tyagi S., Kramer F.R. Molecular beacons: Probes that fluoresce upon hybridization. Nat. Biotechnol. 14:1996;303-308
-
(1996)
Nat. Biotechnol.
, vol.14
, pp. 303-308
-
-
Tyagi, S.1
Kramer, F.R.2
-
106
-
-
0031983834
-
Multicolor molecular beacons for allele discrimination
-
Tyagi S., Bratu D.P., Kramer F.R. Multicolor molecular beacons for allele discrimination. Nat. Biotechnol. 16:1998;49-53
-
(1998)
Nat. Biotechnol.
, vol.16
, pp. 49-53
-
-
Tyagi, S.1
Bratu, D.P.2
Kramer, F.R.3
-
107
-
-
18744377158
-
Microarray-based detection and genotyping of viral pathogens
-
Wang D., Coscoy L., Zylberberg M., Avila P.C., Boushey H.A., Ganem D., DeRisi J.L. Microarray-based detection and genotyping of viral pathogens. Proc Natl. Acad. Sci. USA. 99:2002;15687-15692
-
(2002)
Proc Natl. Acad. Sci. USA
, vol.99
, pp. 15687-15692
-
-
Wang, D.1
Coscoy, L.2
Zylberberg, M.3
Avila, P.C.4
Boushey, H.A.5
Ganem, D.6
Derisi, J.L.7
-
108
-
-
77954424860
-
High throughput DNA sequencing for systematic applications
-
R. DeSalle, W.C. Wheeler, & G. Giribet. Birkhauser Press
-
Whiting M.F. High throughput DNA sequencing for systematic applications. DeSalle R., Wheeler W.C., Giribet G. "Techniques in Molecular Systematics and Evolution" 2002;Birkhauser Press
-
(2002)
Techniques in Molecular Systematics and Evolution
-
-
Whiting, M.F.1
-
111
-
-
0345328128
-
Gene sequences useful for predicting relatedness of whole genomes in bacteria
-
Zeigler R. Gene sequences useful for predicting relatedness of whole genomes in bacteria. Int. J. Syst. Evol. Microbiol. 53:2003;1893-1900
-
(2003)
Int. J. Syst. Evol. Microbiol.
, vol.53
, pp. 1893-1900
-
-
Zeigler, R.1
-
113
-
-
19944404077
-
Shallow genomics, phylogenetics, and evolution in the family Drosophilidae
-
R. Altman, A.K. Dunker, L. Hunter, K. Lauderdale, & T. Klein. Honolulu: University of Hawaii Press
-
Zilversmit M., O'Grady P.M., DeSalle R. Shallow genomics, phylogenetics, and evolution in the family Drosophilidae. Altman R., Dunker A.K., Hunter L., Lauderdale K., Klein T. "Pacific Symposium on Biocomputing" 1998;512-523 University of Hawaii Press, Honolulu
-
(1998)
Pacific Symposium on Biocomputing
, pp. 512-523
-
-
Zilversmit, M.1
O'Grady, P.M.2
Desalle, R.3
|