메뉴 건너뛰기




Volumn 395, Issue , 2005, Pages 104-133

Animal phylogenomics: Multiple interspecific genome comparisons

(1)  DeSalle, Rob a  

a NONE

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BIOLOGY; COMPARATIVE STUDY; DNA SEQUENCE; GENE SEQUENCE; GENOME ANALYSIS; GENOMICS; MEDICAL TECHNOLOGY; NONHUMAN; ORTHOLOGY; PHYLOGENY; PHYLOGEOGRAPHY; PRIORITY JOURNAL;

EID: 19944364160     PISSN: 00766879     EISSN: None     Source Type: Book Series    
DOI: 10.1016/S0076-6879(05)95008-8     Document Type: Article
Times cited : (7)

References (113)
  • 1
    • 2542449370 scopus 로고    scopus 로고
    • Single nucleotide polymorphism (SNP) discovery and genotyping in mammals: A targeted-gene approach
    • Aitken N., Smith S., Schwarz C., Morin P.A. Single nucleotide polymorphism (SNP) discovery and genotyping in mammals: A targeted-gene approach. Mol. Ecol. 13:2004;1423-1431
    • (2004) Mol. Ecol. , vol.13 , pp. 1423-1431
    • Aitken, N.1    Smith, S.2    Schwarz, C.3    Morin, P.A.4
  • 2
    • 0032088099 scopus 로고    scopus 로고
    • Assessing the relative contribution of molecular and morphological characters in simultaneous analysis trees
    • Baker R.H., Yu X.B., DeSalle R. Assessing the relative contribution of molecular and morphological characters in simultaneous analysis trees. Mol. Phylogenet. Evol. 9:1998;427-436
    • (1998) Mol. Phylogenet. Evol. , vol.9 , pp. 427-436
    • Baker, R.H.1    Yu, X.B.2    Desalle, R.3
  • 3
    • 0031371067 scopus 로고    scopus 로고
    • Multiple sources of character information and the phylogeny of Hawaiian drosophilids
    • Baker R.H., DeSalle R. Multiple sources of character information and the phylogeny of Hawaiian drosophilids. Syst. Biol. 46:1997;654-673
    • (1997) Syst. Biol. , vol.46 , pp. 654-673
    • Baker, R.H.1    Desalle, R.2
  • 4
    • 0034602344 scopus 로고    scopus 로고
    • A Kingdom-level phylogeny of eukaryotes based on combined protein data
    • Baldauf S.L., Roger A.J., Wenk-Siefert I., Doolittle W.F. A Kingdom-level phylogeny of eukaryotes based on combined protein data. Science. 290:2000;972-977
    • (2000) Science , vol.290 , pp. 972-977
    • Baldauf, S.L.1    Roger, A.J.2    Wenk-Siefert, I.3    Doolittle, W.F.4
  • 7
    • 0031711523 scopus 로고    scopus 로고
    • Population aggregation analysis of three caviar-producing species of stugeons and implications for the species identification of black caviar
    • Birstein V.J., Doukakis P., Sorkin B., DeSalle R. Population aggregation analysis of three caviar-producing species of stugeons and implications for the species identification of black caviar. Conserv. Biol. 12:1998;766-775
    • (1998) Conserv. Biol , vol.12 , pp. 766-775
    • Birstein, V.J.1    Doukakis, P.2    Sorkin, B.3    Desalle, R.4
  • 10
    • 0037374617 scopus 로고    scopus 로고
    • Detection of potato viruses using microarray technology: Towards a generic method for plant viral disease diagnosis
    • Boonham N., Walsh K., Smith P., Madagan K., Graham I., Baker I. Detection of potato viruses using microarray technology: Towards a generic method for plant viral disease diagnosis. J. Virol. Methods. 108:2003;181-187
    • (2003) J. Virol. Methods , vol.108 , pp. 181-187
    • Boonham, N.1    Walsh, K.2    Smith, P.3    Madagan, K.4    Graham, I.5    Baker, I.6
  • 11
    • 0000367652 scopus 로고
    • The limits of amino-acid sequence data in angiosperm phylogenetic reconstruction
    • Bremer K. The limits of amino-acid sequence data in angiosperm phylogenetic reconstruction. Evolution. 42:1988;795-803
    • (1988) Evolution , vol.42 , pp. 795-803
    • Bremer, K.1
  • 13
    • 0036137155 scopus 로고    scopus 로고
    • Eubacterial phylogeny based on translational apparatus proteins
    • Brochier C., Bapteste E., Moreira D., Philippe H. Eubacterial phylogeny based on translational apparatus proteins. Trends Genet. 18:2002;1-5
    • (2002) Trends Genet. , vol.18 , pp. 1-5
    • Brochier, C.1    Bapteste, E.2    Moreira, D.3    Philippe, H.4
  • 14
    • 0031470387 scopus 로고    scopus 로고
    • Archaea and the prokaryote-to-eukaryote transition
    • Brown J.R., Doolittle W.F. Archaea and the prokaryote-to-eukaryote transition. Microbiol. Mol. Biol. Rev. 61:1997;456-502
    • (1997) Microbiol. Mol. Biol. Rev. , vol.61 , pp. 456-502
    • Brown, J.R.1    Doolittle, W.F.2
  • 16
    • 84988042823 scopus 로고    scopus 로고
    • Comparative genomics: This year's model?
    • Campbell N. Comparative genomics: This year's model? Nature Reviews in Genetics. 5:2004;82-83
    • (2004) Nature Reviews in Genetics , vol.5 , pp. 82-83
    • Campbell, N.1
  • 19
    • 0029812093 scopus 로고    scopus 로고
    • Full-length cDNA cloning and determination of mRNA 5′ and 3′ ends by amplification of adaptor-ligated cDNA
    • Chenchik A., Diachenko L., Moqadam F., Tarabykin V., Lukyanov S., Siebert P.D. Full-length cDNA cloning and determination of mRNA 5′ and 3′ ends by amplification of adaptor-ligated cDNA. Biotechniques. 21:1996;526-534
    • (1996) Biotechniques , vol.21 , pp. 526-534
    • Chenchik, A.1    Diachenko, L.2    Moqadam, F.3    Tarabykin, V.4    Lukyanov, S.5    Siebert, P.D.6
  • 22
    • 2442695243 scopus 로고    scopus 로고
    • Comparison of human chromosome 21 conserved non-genic sequences (CNGs) with the mouse and dog genomes shows that their selective constraint is independent of their genic environment
    • Dermitzakis E.T., Kirkness E., Schwarz S., Birney E., Reymond A., Antonarakis S.E. Comparison of human chromosome 21 conserved non-genic sequences (CNGs) with the mouse and dog genomes shows that their selective constraint is independent of their genic environment. Genome Res. 14:2004;852-859
    • (2004) Genome Res. , vol.14 , pp. 852-859
    • Dermitzakis, E.T.1    Kirkness, E.2    Schwarz, S.3    Birney, E.4    Reymond, A.5    Antonarakis, S.E.6
  • 25
    • 0031976258 scopus 로고    scopus 로고
    • Phylogenomics: Improving functional predictions for uncharacterized genes by evolutionary analysis
    • Eisen J.A. Phylogenomics: Improving functional predictions for uncharacterized genes by evolutionary analysis. Genome Res. 8:1998;163-167
    • (1998) Genome Res. , vol.8 , pp. 163-167
    • Eisen, J.A.1
  • 26
    • 0033669672 scopus 로고    scopus 로고
    • Horizontal gene transfer among microbial genomes: New insights from complete genome analysis
    • Eisen J.A. Horizontal gene transfer among microbial genomes: New insights from complete genome analysis. Curr. Opin. Genet. Dev. 10:2000;606-611
    • (2000) Curr. Opin. Genet. Dev. , vol.10 , pp. 606-611
    • Eisen, J.A.1
  • 27
    • 0038518196 scopus 로고    scopus 로고
    • Phylogenomics: Intersection of evolution and genomics
    • Eisen J.A., Fraser C.M. Phylogenomics: Intersection of evolution and genomics. Science. 300:2003;1706-1707
    • (2003) Science , vol.300 , pp. 1706-1707
    • Eisen, J.A.1    Fraser, C.M.2
  • 28
    • 0030862610 scopus 로고    scopus 로고
    • Gastrogenomic delights: A movable feast
    • Eisen J.A., Kaiser D., Myers R.M. Gastrogenomic delights: A movable feast. Nature Med. 3:1997;1076-1078
    • (1997) Nature Med. , vol.3 , pp. 1076-1078
    • Eisen, J.A.1    Kaiser, D.2    Myers, R.M.3
  • 29
    • 0029157378 scopus 로고
    • Evolution of the SNF2 family of proteins: Subfamilies with distinct sequences and functions
    • Eisen J.A., Sweder K.S., Hanawalt P.C. Evolution of the SNF2 family of proteins: Subfamilies with distinct sequences and functions. Nucleic Acids Res. 23:1995;2715-2723
    • (1995) Nucleic Acids Res. , vol.23 , pp. 2715-2723
    • Eisen, J.A.1    Sweder, K.S.2    Hanawalt, P.C.3
  • 31
    • 0031955518 scopus 로고    scopus 로고
    • Basecalling of automated sequence traces using phred. I. Accuracy assessment
    • Ewing B., Hiller L., Wendl M., Green P. Basecalling of automated sequence traces using phred. I. Accuracy assessment. Genome Res. 8:1998;175-185
    • (1998) Genome Res. , vol.8 , pp. 175-185
    • Ewing, B.1    Hiller, L.2    Wendl, M.3    Green, P.4
  • 33
    • 0000461280 scopus 로고
    • Confidence limits on phylogenies: An approach using the bootstrap
    • Felsenstein J. Confidence limits on phylogenies: An approach using the bootstrap. Evolution. 39:1985;783-791
    • (1985) Evolution , vol.39 , pp. 783-791
    • Felsenstein, J.1
  • 35
    • 0034178257 scopus 로고    scopus 로고
    • Homology: A personal view of some of the problems
    • Fitch W.M. Homology: A personal view of some of the problems. Trends Genet. 16:2000;227-234
    • (2000) Trends Genet. , vol.16 , pp. 227-234
    • Fitch, W.M.1
  • 38
    • 0038785934 scopus 로고    scopus 로고
    • Combined support for wholesale taxic atavism in gavialine crocodylians
    • Gatesy J., Amato G., Norell M., DeSalle R., Hayashi C. Combined support for wholesale taxic atavism in gavialine crocodylians. Syst. Biol. 52:2003;403-422
    • (2003) Syst. Biol. , vol.52 , pp. 403-422
    • Gatesy, J.1    Amato, G.2    Norell, M.3    Desalle, R.4    Hayashi, C.5
  • 39
    • 0032805771 scopus 로고    scopus 로고
    • Corroboration among data sets in simultaneous analysis: Hidden support for phylogenetic relationships among higher level Artiodactyl taxa
    • Gatesy J.E., O'Grady P.M., Baker R. Corroboration among data sets in simultaneous analysis: Hidden support for phylogenetic relationships among higher level Artiodactyl taxa. Cladistics. 15:1999;271-313
    • (1999) Cladistics , vol.15 , pp. 271-313
    • Gatesy, J.E.1    O'Grady, P.M.2    Baker, R.3
  • 40
    • 0031955116 scopus 로고    scopus 로고
    • Consed: A graphical tool for sequence finishing
    • Gordon D., Abanjian C., Green P. Consed: A graphical tool for sequence finishing. Genome Res. 8:1998;195-202
    • (1998) Genome Res. , vol.8 , pp. 195-202
    • Gordon, D.1    Abanjian, C.2    Green, P.3
  • 41
    • 84984934752 scopus 로고    scopus 로고
    • Resequencing and mutational analysis using oligonucleotide microarrays
    • Hacia J.C. Resequencing and mutational analysis using oligonucleotide microarrays. Nat. Genet. 21:(Suppl.):1999;42-47
    • (1999) Nat. Genet. , vol.21 , Issue.SUPPL. , pp. 42-47
    • Hacia, J.C.1
  • 42
    • 0344719474 scopus 로고    scopus 로고
    • SNP discovery in interspecific hybrids of catfish by comparative EST analysis
    • He C., Chen L., Simmons M., Li P., Kim S., Liu Z.J. SNP discovery in interspecific hybrids of catfish by comparative EST analysis. Anim. Genet. 34:2003;445-448
    • (2003) Anim. Genet. , vol.34 , pp. 445-448
    • He, C.1    Chen, L.2    Simmons, M.3    Li, P.4    Kim, S.5    Liu, Z.J.6
  • 44
    • 0042531561 scopus 로고    scopus 로고
    • Barcoding animal life: Cytochrome c oxidase subunit 1 divergences among closely related species
    • Hebert P.D.N., Ratnasingham S., DeWaard J.R. Barcoding animal life: Cytochrome c oxidase subunit 1 divergences among closely related species. Proc. R. Soc. Lond. B Suppl. 270:2003b;S96-S99
    • (2003) Proc. R. Soc. Lond. B Suppl. , vol.270
    • Hebert, P.D.N.1    Ratnasingham, S.2    Dewaard, J.R.3
  • 47
    • 0032849859 scopus 로고    scopus 로고
    • CAP3: A DNA sequence assembly program
    • Huan X., Madan A. CAP3: A DNA sequence assembly program. Genome Res. 9:1999;868-877
    • (1999) Genome Res. , vol.9 , pp. 868-877
    • Huan, X.1    Madan, A.2
  • 48
    • 0002410257 scopus 로고    scopus 로고
    • Parametric bootstrapping in molecular phylogenetics: Applications and performance
    • J.D. Ferraris, & S.R. Palumbi. New York: Wiley & Liss
    • Huelsenbeck J.P., Hillis D.M., Jones R. Parametric bootstrapping in molecular phylogenetics: Applications and performance. Ferraris J.D., Palumbi S.R. "Molecular Zoology: Advances, Strategies, and Protocols" 1996;19-46 Wiley & Liss, New York
    • (1996) Molecular Zoology: Advances, Strategies, and Protocols , pp. 19-46
    • Huelsenbeck, J.P.1    Hillis, D.M.2    Jones, R.3
  • 49
    • 0026075541 scopus 로고
    • Large-scale and automated DNA sequence determination
    • Hunkapiller T., Kaiser R.J., Koop B.F., Hood L. Large-scale and automated DNA sequence determination. Science. 254:1991;59-67
    • (1991) Science , vol.254 , pp. 59-67
    • Hunkapiller, T.1    Kaiser, R.J.2    Koop, B.F.3    Hood, L.4
  • 51
    • 19944411294 scopus 로고    scopus 로고
    • Theory and practice of parallel direct optimization
    • R. DeSalle, G. Giribet, & W. Wheeler. Basel: Birkhauser Verlag
    • Janies D.A., Wheeler W.C. Theory and practice of parallel direct optimization. DeSalle R., Giribet G., Wheeler W. "Techniques in Molecular Systematics and Evolution" 2002;Birkhauser Verlag, Basel
    • (2002) Techniques in Molecular Systematics and Evolution
    • Janies, D.A.1    Wheeler, W.C.2
  • 52
    • 0035002725 scopus 로고    scopus 로고
    • Efficiency of parallel direct optimization
    • Janies D., Wheeler W. Efficiency of parallel direct optimization. Cladistics. 17:2001;S71-S82
    • (2001) Cladistics , vol.17
    • Janies, D.1    Wheeler, W.2
  • 53
    • 0036499057 scopus 로고    scopus 로고
    • SHOT: A webserver for the construction of genome phylogenies
    • Korbel J.O., Snel B., Huynen M.A., Bork P. SHOT: A webserver for the construction of genome phylogenies. Trends Genet. 18:2002;158-162
    • (2002) Trends Genet. , vol.18 , pp. 158-162
    • Korbel, J.O.1    Snel, B.2    Huynen, M.A.3    Bork, P.4
  • 54
    • 0347033327 scopus 로고    scopus 로고
    • EST analysis of the cnidarian Acropora millepora reveals extensive gene loss and rapid sequence divergence in the model invertebrates
    • Kortschak R.D., Samuel G., Saint R., Miller D.J. EST analysis of the cnidarian Acropora millepora reveals extensive gene loss and rapid sequence divergence in the model invertebrates. Curr. Biol. 13:2003;2190-2195
    • (2003) Curr. Biol. , vol.13 , pp. 2190-2195
    • Kortschak, R.D.1    Samuel, G.2    Saint, R.3    Miller, D.J.4
  • 55
    • 0034992826 scopus 로고    scopus 로고
    • The closest BLAST hit is often not the nearest neighbor
    • Koski J., Golding B. The closest BLAST hit is often not the nearest neighbor. J. Mol. Evol. 52:2001;540-542
    • (2001) J. Mol. Evol. , vol.52 , pp. 540-542
    • Koski, J.1    Golding, B.2
  • 56
    • 0142124263 scopus 로고    scopus 로고
    • Gene loss, protein sequence divergence, gene dispensability, expression level, and interactivity are correlated in eukaryotic evolution
    • Krylov D.M., Wolf Y.I., Rogozin I.B., Koonin E.V. Gene loss, protein sequence divergence, gene dispensability, expression level, and interactivity are correlated in eukaryotic evolution. Genome Res. 13:2003;2229-2235
    • (2003) Genome Res. , vol.13 , pp. 2229-2235
    • Krylov, D.M.1    Wolf, Y.I.2    Rogozin, I.B.3    Koonin, E.V.4
  • 57
    • 0037291466 scopus 로고    scopus 로고
    • Partitioned likelihood support and the evaluation of data set conflict
    • Lee M.S.Y., Hugall A.F. Partitioned likelihood support and the evaluation of data set conflict. Syst. Biol. 52:2003;11-22
    • (2003) Syst. Biol. , vol.52 , pp. 11-22
    • Lee, M.S.Y.1    Hugall, A.F.2
  • 60
    • 0027468779 scopus 로고
    • Cloning the differences between two complex genomes
    • Lisitsyn N., Lisitsyn N., Wigler M. Cloning the differences between two complex genomes. Science. 258:1993;946-951
    • (1993) Science , vol.258 , pp. 946-951
    • Lisitsyn, N.1    Lisitsyn, N.2    Wigler, M.3
  • 61
    • 0028834086 scopus 로고
    • Oligonucleotides with fluorescent dyes at opposite ends provide a quenched probe system useful for detecting PCR product and nucleic acid hybridization
    • Livak K.J., Flood S.A.J., Marmaro J., Giusti W., Deetz K. Oligonucleotides with fluorescent dyes at opposite ends provide a quenched probe system useful for detecting PCR product and nucleic acid hybridization. PCR Methods and Applications. 4:1995;357-362
    • (1995) PCR Methods and Applications , vol.4 , pp. 357-362
    • Livak, K.J.1    Flood, S.A.J.2    Marmaro, J.3    Giusti, W.4    Deetz, K.5
  • 68
    • 0345129990 scopus 로고    scopus 로고
    • Multiplex detection of single-nucleotide variations using molecular beacons
    • Marras S.A.E., Kramer F.R., Tyagi S. Multiplex detection of single-nucleotide variations using molecular beacons. Genet. Anal. 14:1999;151-156
    • (1999) Genet. Anal. , vol.14 , pp. 151-156
    • Marras, S.A.E.1    Kramer, F.R.2    Tyagi, S.3
  • 69
    • 0028213438 scopus 로고
    • Oligo-capping: A simple method to replace the cap structure of eukaryotic mRNAs with oligoribonucleotides
    • Maruyama K., Sugano S. Oligo-capping: A simple method to replace the cap structure of eukaryotic mRNAs with oligoribonucleotides. Gene. 138:1994;171-174
    • (1994) Gene , vol.138 , pp. 171-174
    • Maruyama, K.1    Sugano, S.2
  • 70
    • 0034575479 scopus 로고    scopus 로고
    • Sequence variation in genes and genomic DNA: Methods for large-scale analysis
    • Mir K.U., Southern E.M. Sequence variation in genes and genomic DNA: Methods for large-scale analysis. Annu. Rev. Genomics Human Genet. 1:2000;329-360
    • (2000) Annu. Rev. Genomics Human Genet. , vol.1 , pp. 329-360
    • Mir, K.U.1    Southern, E.M.2
  • 75
    • 0142043938 scopus 로고    scopus 로고
    • Phylogeny of plastids based on cladistic analysis of gene loss inferred from complete plastid genome sequences
    • Nozaki H., Ohta N., Matsuzaki M., Misumi O., Kuroiwa T. Phylogeny of plastids based on cladistic analysis of gene loss inferred from complete plastid genome sequences. J. Mol. Evol. 57:2003;377-382
    • (2003) J. Mol. Evol. , vol.57 , pp. 377-382
    • Nozaki, H.1    Ohta, N.2    Matsuzaki, M.3    Misumi, O.4    Kuroiwa, T.5
  • 76
    • 0001829453 scopus 로고
    • Nucleic acids II: The polymerase chain reaction
    • D. Hillis, & C. Moritz. Sunderland, MA: Sinauer
    • Palumbi S.R. Nucleic acids II: The polymerase chain reaction. Hillis D., Moritz C. "Molecular Systematics" 2nd Ed.:1995;205-247 Sinauer, Sunderland, MA
    • (1995) "Molecular Systematics" 2nd Ed. , pp. 205-247
    • Palumbi, S.R.1
  • 77
    • 0028354921 scopus 로고
    • Contrasting population structure from nuclear intron sequences and mtDNA of humpback whales
    • Palumbi S.R., Baker C.S. Contrasting population structure from nuclear intron sequences and mtDNA of humpback whales. Mol. Biol. Evol. 11:1994;426-435
    • (1994) Mol. Biol. Evol. , vol.11 , pp. 426-435
    • Palumbi, S.R.1    Baker, C.S.2
  • 78
    • 0023989064 scopus 로고
    • Improved tools for biological sequence comparison
    • Pearson W.R., Lipman D.J. Improved tools for biological sequence comparison. Proc. Natl. Acad. Sci. USA. 4:1988;2444-2448
    • (1988) Proc. Natl. Acad. Sci. USA , vol.4 , pp. 2444-2448
    • Pearson, W.R.1    Lipman, D.J.2
  • 79
    • 1942453353 scopus 로고    scopus 로고
    • Development of microarray-based diagnostics of voles and shrews for use in biodiversity monitoring studies, and evaluation of mitochondrial cytochrome oxidase I vs. cytochrome b as genetic markers
    • Pfunder M., Holzgang O., Frey J.E. Development of microarray-based diagnostics of voles and shrews for use in biodiversity monitoring studies, and evaluation of mitochondrial cytochrome oxidase I vs. cytochrome b as genetic markers. Mol. Ecol. 13:2004;1277-1285
    • (2004) Mol. Ecol. , vol.13 , pp. 1277-1285
    • Pfunder, M.1    Holzgang, O.2    Frey, J.E.3
  • 80
    • 0033775967 scopus 로고    scopus 로고
    • Multiple sequence alignment in phylogenetic analysis
    • Phillips A., Janies D., Wheeler W. Multiple sequence alignment in phylogenetic analysis. Mol. Phylogenet. Evol. 16:2000;317-330
    • (2000) Mol. Phylogenet. Evol. , vol.16 , pp. 317-330
    • Phillips, A.1    Janies, D.2    Wheeler, W.3
  • 81
    • 19944371878 scopus 로고    scopus 로고
    • Sub-genomic sequencing projects for phylogenetic analysis
    • R. DeSalle, G. Giribet, & W. Wheeler. Birkhauser
    • Phillips A. Sub-genomic sequencing projects for phylogenetic analysis. DeSalle R., Giribet G., Wheeler W. "Techniques in Molecular Systematics and Evolution" 2002;132-146 Birkhauser
    • (2002) Techniques in Molecular Systematics and Evolution , pp. 132-146
    • Phillips, A.1
  • 82
    • 0038617707 scopus 로고    scopus 로고
    • The widespread colonization island of Actinobacillus actinomycetemcomitans
    • Planet P.J., Kachlany S.C., Fine D.H., DeSalle R., Figurski D.H. The widespread colonization island of Actinobacillus actinomycetemcomitans. Nat. Genet. 34:2003;193-198
    • (2003) Nat. Genet. , vol.34 , pp. 193-198
    • Planet, P.J.1    Kachlany, S.C.2    Fine, D.H.3    Desalle, R.4    Figurski, D.H.5
  • 85
    • 0037313182 scopus 로고    scopus 로고
    • Evolution of gene expression in the Drosophila melanogaster subgroup
    • Rifkin S.A., Kim J., White K.P. Evolution of gene expression in the Drosophila melanogaster subgroup. Nat. Genet. 33:2003;138-144
    • (2003) Nat. Genet. , vol.33 , pp. 138-144
    • Rifkin, S.A.1    Kim, J.2    White, K.P.3
  • 86
    • 4544313053 scopus 로고    scopus 로고
    • The ring of life provides evidence for a genome fusion origin of eukaryotes
    • Rivera M.C., Lake J.A. The ring of life provides evidence for a genome fusion origin of eukaryotes. Nature. 432:2004;152-155
    • (2004) Nature , vol.432 , pp. 152-155
    • Rivera, M.C.1    Lake, J.A.2
  • 87
    • 0242365676 scopus 로고    scopus 로고
    • Genome-scale approaches to resolving incongruence in molecular phylogenies
    • Rokas A., Williams B.L., King N., Carroll S.B. Genome-scale approaches to resolving incongruence in molecular phylogenies. Nature. 425:2003;798-804
    • (2003) Nature , vol.425 , pp. 798-804
    • Rokas, A.1    Williams, B.L.2    King, N.3    Carroll, S.B.4
  • 88
    • 0041386108 scopus 로고    scopus 로고
    • MrBayes 3: Bayesian phylogenetic inference under mixed models
    • Ronquist F., Huelsenbeck J.P. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics. 19:2003;1572-1574
    • (2003) Bioinformatics , vol.19 , pp. 1572-1574
    • Ronquist, F.1    Huelsenbeck, J.P.2
  • 89
    • 0042232552 scopus 로고    scopus 로고
    • Expressed sequence tags: Alternative or complement to whole genome sequences?
    • Rudd S. Expressed sequence tags: Alternative or complement to whole genome sequences? Trends Plant Sci. 8:2003;321-328
    • (2003) Trends Plant Sci. , vol.8 , pp. 321-328
    • Rudd, S.1
  • 92
    • 0344861871 scopus 로고    scopus 로고
    • A decade of progress in plant molecular phylogenetics
    • Savolainen V., Chase M.W. A decade of progress in plant molecular phylogenetics. Trends Genet. 19:2003;717-724
    • (2003) Trends Genet. , vol.19 , pp. 717-724
    • Savolainen, V.1    Chase, M.W.2
  • 94
    • 0032900532 scopus 로고    scopus 로고
    • Genome phylogeny based on gene content
    • Snel B., Bork P., Huynen M. Genome phylogeny based on gene content. Nat. Genet. 21:1999;108-110
    • (1999) Nat. Genet. , vol.21 , pp. 108-110
    • Snel, B.1    Bork, P.2    Huynen, M.3
  • 95
    • 0036143446 scopus 로고    scopus 로고
    • Genomes in flux: The evolution of archaeal and protobacterial gene content
    • Snel B., Bork P., Huynen M. Genomes in flux: The evolution of archaeal and protobacterial gene content. Genome Res. 12:2002;17-25
    • (2002) Genome Res. , vol.12 , pp. 17-25
    • Snel, B.1    Bork, P.2    Huynen, M.3
  • 97
    • 0029962816 scopus 로고    scopus 로고
    • DNA chips: Analyzing sequence by hybridization to oligonucleotides on a large scale
    • Southern E.M. DNA chips: Analyzing sequence by hybridization to oligonucleotides on a large scale. Trends Genet. 12:1996;110-115
    • (1996) Trends Genet. , vol.12 , pp. 110-115
    • Southern, E.M.1
  • 98
    • 0035927649 scopus 로고    scopus 로고
    • Phylogenetic analyses do not support horizontal gene transfers from bacteria to vertebrates
    • Stanhope M.J., Lupas A., Italia M.J., Koretke K.K., Volker C., Brown J.R. Phylogenetic analyses do not support horizontal gene transfers from bacteria to vertebrates. Nature. 411:2001;940-944
    • (2001) Nature , vol.411 , pp. 940-944
    • Stanhope, M.J.1    Lupas, A.2    Italia, M.J.3    Koretke, K.K.4    Volker, C.5    Brown, J.R.6
  • 99
    • 0141793707 scopus 로고    scopus 로고
    • Taxonomy, DNA, and the bar code of life
    • Stoeckle M. Taxonomy, DNA, and the bar code of life. BioScience. 53:2003;2-3
    • (2003) BioScience , vol.53 , pp. 2-3
    • Stoeckle, M.1
  • 101
    • 0036788174 scopus 로고    scopus 로고
    • Comparison of EST libraries from seven beetle species: Towards a framework for phylogenomics of the Coleoptera
    • Theodorides K., De Riva A., Gómez-Zurita J., Foster P.G., Vogler A.P. Comparison of EST libraries from seven beetle species: Towards a framework for phylogenomics of the Coleoptera. Insect Mol. Biol. 11:2002;467-475
    • (2002) Insect Mol. Biol. , vol.11 , pp. 467-475
    • Theodorides, K.1    De Riva, A.2    Gómez-Zurita, J.3    Foster, P.G.4    Vogler, A.P.5
  • 103
    • 0036468881 scopus 로고    scopus 로고
    • Vertebrate genome sequencing: Building a backbone for comparative genomics
    • Thomas J.W., Touchman J.W. Vertebrate genome sequencing: Building a backbone for comparative genomics. Trends Genet. 18:2002;104-108
    • (2002) Trends Genet. , vol.18 , pp. 104-108
    • Thomas, J.W.1    Touchman, J.W.2
  • 104
    • 0033168097 scopus 로고    scopus 로고
    • A comprehensive comparison of multiple sequence alignment programs
    • Thompson J.D., Plewniak F., Poch O. A comprehensive comparison of multiple sequence alignment programs. Nucleic Acids Res. 27:1999;2682-2690
    • (1999) Nucleic Acids Res. , vol.27 , pp. 2682-2690
    • Thompson, J.D.1    Plewniak, F.2    Poch, O.3
  • 105
    • 0029670262 scopus 로고    scopus 로고
    • Molecular beacons: Probes that fluoresce upon hybridization
    • Tyagi S., Kramer F.R. Molecular beacons: Probes that fluoresce upon hybridization. Nat. Biotechnol. 14:1996;303-308
    • (1996) Nat. Biotechnol. , vol.14 , pp. 303-308
    • Tyagi, S.1    Kramer, F.R.2
  • 106
    • 0031983834 scopus 로고    scopus 로고
    • Multicolor molecular beacons for allele discrimination
    • Tyagi S., Bratu D.P., Kramer F.R. Multicolor molecular beacons for allele discrimination. Nat. Biotechnol. 16:1998;49-53
    • (1998) Nat. Biotechnol. , vol.16 , pp. 49-53
    • Tyagi, S.1    Bratu, D.P.2    Kramer, F.R.3
  • 108
    • 77954424860 scopus 로고    scopus 로고
    • High throughput DNA sequencing for systematic applications
    • R. DeSalle, W.C. Wheeler, & G. Giribet. Birkhauser Press
    • Whiting M.F. High throughput DNA sequencing for systematic applications. DeSalle R., Wheeler W.C., Giribet G. "Techniques in Molecular Systematics and Evolution" 2002;Birkhauser Press
    • (2002) Techniques in Molecular Systematics and Evolution
    • Whiting, M.F.1
  • 111
    • 0345328128 scopus 로고    scopus 로고
    • Gene sequences useful for predicting relatedness of whole genomes in bacteria
    • Zeigler R. Gene sequences useful for predicting relatedness of whole genomes in bacteria. Int. J. Syst. Evol. Microbiol. 53:2003;1893-1900
    • (2003) Int. J. Syst. Evol. Microbiol. , vol.53 , pp. 1893-1900
    • Zeigler, R.1
  • 113
    • 19944404077 scopus 로고    scopus 로고
    • Shallow genomics, phylogenetics, and evolution in the family Drosophilidae
    • R. Altman, A.K. Dunker, L. Hunter, K. Lauderdale, & T. Klein. Honolulu: University of Hawaii Press
    • Zilversmit M., O'Grady P.M., DeSalle R. Shallow genomics, phylogenetics, and evolution in the family Drosophilidae. Altman R., Dunker A.K., Hunter L., Lauderdale K., Klein T. "Pacific Symposium on Biocomputing" 1998;512-523 University of Hawaii Press, Honolulu
    • (1998) Pacific Symposium on Biocomputing , pp. 512-523
    • Zilversmit, M.1    O'Grady, P.M.2    Desalle, R.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.