Eubacterial phylogeny based on translational apparatus proteins

Trends in Genetics

Volumn 18, Issue 1, 2002, Pages 1-5

  Brochier, Céline ^a   Bapteste, Eric ^a   Moreira, David ^a   Philippe, Hervé ^a  

^a Université René Descartes   (France)

Author keywords

[No Author keywords available]

Indexed keywords

PROTEIN; RIBOSOME RNA;

CONTROLLED STUDY; GENE TRANSFER; HYPOTHESIS; NONHUMAN; PHYLOGENY; PRIORITY JOURNAL; PROKARYOTE; REVIEW; RNA TRANSLATION; TECHNIQUE;

BACTERIA (MICROORGANISMS); PROKARYOTA;

EID: 0036137155     PISSN: 01689525     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0168-9525(01)02522-7     Document Type: Short Survey

References (28)

1. Phylogenetic classification and the universal tree
2. The universal ancestor
3. Lateral gene transfer and the nature of bacterial innovation
4. Genome phylogeny based on gene content
5. Bacterial evolution
6. Horizontal gene transfer among genomes: The complexity hypothesis
7. The COG database: New developments in phylogenetic classification of proteins from complete genomes
8. Evolution of aminoacyl-tRNA synthetases-analysis of unique domain architectures and phylogenetic trees reveals a complex history of horizontal gene transfer events
9. Aminoacyl-tRNA synthetases, the genetic code, and the evolutionary process
10. Universal trees based on large combined protein sequence datasets
11. How many genes in Arabidopsis come from cyanobacteria? An estimate from 386 protein phylogenies
12. Phylogeny based on elongation factor Tu reflects the phenotypic features of mycoplasmas better than that based on 16S rRNA
13. Identification of thermophilic species by the amino acid compositions deduced from their genomes
14. Genome of the extremely radiation-resistant bacterium Deinococcus radiodurans viewed from the perspective of comparative genomics
15. Signature sequences in diverse proteins provide evidence of a close evolutionary relationship between the deinococcus-thermus group and cyanobacteria
16. Recovering evolutionary trees under a more realistic model of sequence evolution
17. Evaluation of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data, and the branching order in hominoidea
18. Likelihood-based tests of topologies in phylogenetics
19. Dating of the human-ape splitting by a molecular clock of mitochondrial DNA
20. Archaeal phylogeny: Reexamination of the phylogenetic position of Archaeoglobus fulgidus in light of certain composition-induced artifacts
21. Among-site rate variation and its impact on phylogenetic analyses
22. Taxonomic congruence versus total evidence, and amniote phylogeny inferred from fossils, molecules, and morphology
23. Partitioning and combining characters in phylogenetic analysis
24. The evolutionary history of ribosomal protein RpS14: Horizontal gene transfer at the heart of the ribosome
25. Microbial genome: Dealing with diversity
26. Maximum-likelihood phylogenetic analysis under a covarion-like model
27. Phylogeny of eukaryotes based on ribosomal RNA: Long-branch attraction and models of sequence evolution
28. Intraspecies variation in bacterial genomes: The need for a species genome concept