-
1
-
-
0033920569
-
Plastid genome phylogeny and a model of amino acid substitution for proteins encoded by chloroplast DNA
-
Adachi J, Waddell PJ, Martin W, Hasegawa M (2000) Plastid genome phylogeny and a model of amino acid substitution for proteins encoded by chloroplast DNA. J Mol Evol 50:348-358
-
(2000)
J Mol Evol
, vol.50
, pp. 348-358
-
-
Adachi, J.1
Waddell, P.J.2
Martin, W.3
Hasegawa, M.4
-
2
-
-
0037154011
-
A cyanobacterial gene in non-photosynthetic protists - An early chloroplast acquisition in Eukaryotes?
-
Andersson JO, Roger AJ (2002) A cyanobacterial gene in non-photosynthetic protists - An early chloroplast acquisition in Eukaryotes? Curr Biol 12:115-119
-
(2002)
Curr Biol
, vol.12
, pp. 115-119
-
-
Andersson, J.O.1
Roger, A.J.2
-
3
-
-
0034602344
-
A kingdom-level phylogeny of eukaryotes based on combined protein data
-
Baldauf SL, Roger AJ, Wenk-Siefert I, Doolittle WF (2000) A kingdom-level phylogeny of eukaryotes based on combined protein data. Science 290:972-977
-
(2000)
Science
, vol.290
, pp. 972-977
-
-
Baldauf, S.L.1
Roger, A.J.2
Wenk-Siefert, I.3
Doolittle, W.F.4
-
4
-
-
0001674430
-
The phylogeny of plastids: A review based on comparisons of small subunit ribosomal RNA coding regions
-
Bhattacharya D, Medlin L (1995) The phylogeny of plastids: A review based on comparisons of small subunit ribosomal RNA coding regions. J Phycol 31:489-498
-
(1995)
J Phycol
, vol.31
, pp. 489-498
-
-
Bhattacharya, D.1
Medlin, L.2
-
5
-
-
0000116740
-
A method for deducing branching sequences in phylogeny
-
Camin JH, Sokal RR (1965) A method for deducing branching sequences in phylogeny. Evolution 19:311-326
-
(1965)
Evolution
, vol.19
, pp. 311-326
-
-
Camin, J.H.1
Sokal, R.R.2
-
6
-
-
0037154314
-
Chloroplast evolution: Secondary symbiogenesis and multiple losses
-
Cavalier-Smith T (2002) Chloroplast evolution: Secondary symbiogenesis and multiple losses. Curr Biol 12:R62-R64
-
(2002)
Curr Biol
, vol.12
-
-
Cavalier-Smith, T.1
-
7
-
-
0032727696
-
Tracing the thread of plastid diversity through the tapestry of life
-
Delwiche CF (1999) Tracing the thread of plastid diversity through the tapestry of life. Am Nat 154:164-177
-
(1999)
Am Nat
, vol.154
, pp. 164-177
-
-
Delwiche, C.F.1
-
8
-
-
0002962228
-
The origin of plastids and their spread via secondary symbiosis
-
Bhattacharya D (ed) Springer-Verlag, Wien
-
Delwiche CF, Palmer JD (1997) The origin of plastids and their spread via secondary symbiosis. In: Bhattacharya D (ed) Origin of algae and their plastids. Springer-Verlag, Wien, pp 53-86
-
(1997)
Origin of Algae and Their Plastids
, pp. 53-86
-
-
Delwiche, C.F.1
Palmer, J.D.2
-
9
-
-
84986845518
-
Pigment composition of the scaly green flagellate Mesostigma viride (Micromonadophyceae) is similar to that of the siphonous green alga Bryopsis plumosa (Ulvophyceae)
-
Fawley MW, Lee CM (1990) Pigment composition of the scaly green flagellate Mesostigma viride (Micromonadophyceae) is similar to that of the siphonous green alga Bryopsis plumosa (Ulvophyceae). J Phycol 26:666-670
-
(1990)
J Phycol
, vol.26
, pp. 666-670
-
-
Fawley, M.W.1
Lee, C.M.2
-
10
-
-
0000461280
-
Confidence limits on phylogenies: An approach using bootstrap
-
Felsenstein J (1985) Confidence limits on phylogenies: an approach using bootstrap. Evolution 38:16-24
-
(1985)
Evolution
, vol.38
, pp. 16-24
-
-
Felsenstein, J.1
-
11
-
-
0002721825
-
The evolution of the green algae
-
Bhattacharya D (ed) Springer-Verlag, Wien
-
Friedl T (1997) The evolution of the green algae. In: Bhattacharya D (ed) Origin of algae and their plastids. Springer-Verlag, Wien, pp 87-101
-
(1997)
Origin of Algae and Their Plastids
, pp. 87-101
-
-
Friedl, T.1
-
12
-
-
0004162569
-
-
Prentice Hall, Upper Saddle River, NJ
-
Graham LE, Wilcox LW (2000) Algae. Prentice Hall, Upper Saddle River, NJ
-
(2000)
Algae
-
-
Graham, L.E.1
Wilcox, L.W.2
-
13
-
-
0037417809
-
Plant-like traits associated with metabolism of Trypanosoma parasites
-
Hannaert V, Saavedra E, Duffieux F, Szikora JP, Rigden DJ, Michels PAM, Opperdoes FR (2003) Plant-like traits associated with metabolism of Trypanosoma parasites. Proc Natl Acad Sci USA 100:1067-1071
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 1067-1071
-
-
Hannaert, V.1
Saavedra, E.2
Duffieux, F.3
Szikora, J.P.4
Rigden, D.J.5
Michels, P.A.M.6
Opperdoes, F.R.7
-
14
-
-
0036791017
-
Acceleration of genomic evolution caused by enhanced mutation rate in endocellular symbionts
-
Itoh T, Martin W, Nei M (2002) Acceleration of genomic evolution caused by enhanced mutation rate in endocellular symbionts. Proc Natl Acad Sci USA 99:12944-12948
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, pp. 12944-12948
-
-
Itoh, T.1
Martin, W.2
Nei, M.3
-
15
-
-
0019296687
-
A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
-
Kimura M (1980) A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16:111-120
-
(1980)
J Mol Evol
, vol.16
, pp. 111-120
-
-
Kimura, M.1
-
16
-
-
0027305131
-
Introns as mobile genetic elements
-
Lambowitz AM, Belfort M (1993) Introns as mobile genetic elements. Ann Rev Bichem 62:587-622
-
(1993)
Ann Rev Bichem
, vol.62
, pp. 587-622
-
-
Lambowitz, A.M.1
Belfort, M.2
-
17
-
-
0002160837
-
Gene transfer from organelles to the nucleus: How much, what happens, and why?
-
Martin W, Herrmann RG (1998) Gene transfer from organelles to the nucleus: How much, what happens, and why? Plant Physiol 118:9-17
-
(1998)
Plant Physiol
, vol.118
, pp. 9-17
-
-
Martin, W.1
Herrmann, R.G.2
-
18
-
-
0037126071
-
Evolutionary analysis of Arabidopsis, cyanobacterial, and chloroplast genomes reveals plastid phylogeny and thousands of cyanobacterial genes in the nucleus
-
Martin W, Rujan T, Richly E, Hansen A, Cornelsen S, Lins T, et al. (2002) Evolutionary analysis of Arabidopsis, cyanobacterial, and chloroplast genomes reveals plastid phylogeny and thousands of cyanobacterial genes in the nucleus. Proc Natl Acad Sci USA 99:12246-12251
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, pp. 12246-12251
-
-
Martin, W.1
Rujan, T.2
Richly, E.3
Hansen, A.4
Cornelsen, S.5
Lins, T.6
-
19
-
-
0036845754
-
The Chlamydomonas reinhardtii plastid chromosome: Islands of genes in a sea of repeats
-
Maul JE, Lilly JW, Cui L, dePamphilis CW, Miller W, Harris EH, Stern DB (2002) The Chlamydomonas reinhardtii plastid chromosome: Islands of genes in a sea of repeats. Plant Cell 14:2659-2679
-
(2002)
Plant Cell
, vol.14
, pp. 2659-2679
-
-
Maul, J.E.1
Lilly, J.W.2
Cui, L.3
DePamphilis, C.W.4
Miller, W.5
Harris, E.H.6
Stern, D.B.7
-
20
-
-
0035689472
-
Primary and secondary endosymbiosis and the origin of plastids
-
McFadden GI (2001) Primary and secondary endosymbiosis and the origin of plastids. J Phycol 37:951-959
-
(2001)
J Phycol
, vol.37
, pp. 951-959
-
-
McFadden, G.I.1
-
21
-
-
0030880379
-
Phylogenetic relationships of selected euglenoid genera based on morphological and molecular data
-
Montegut-Felkner AE, Triemer RE (1997) Phylogenetic relationships of selected euglenoid genera based on morphological and molecular data. J Phycol 33:512-519
-
(1997)
J Phycol
, vol.33
, pp. 512-519
-
-
Montegut-Felkner, A.E.1
Triemer, R.E.2
-
23
-
-
0034980405
-
Phylogenetic analysis of phagotrophic, phototrophic and osmotrophic euglenoids by using the nuclear 18S rDNA sequence
-
Müllner AN, Angeler DG, Samuel R, Linton EW, Triemer RE (2001) Phylogenetic analysis of phagotrophic, phototrophic and osmotrophic euglenoids by using the nuclear 18S rDNA sequence. Int J Syst Evol Micr 51:783-791
-
(2001)
Int J Syst Evol Micr
, vol.51
, pp. 783-791
-
-
Müllner, A.N.1
Angeler, D.G.2
Samuel, R.3
Linton, E.W.4
Triemer, R.E.5
-
24
-
-
0028863523
-
An early origin of plastids within the cyanobacterial divergence is suggested by evolutionary trees based on complete 16S rRNA sequences
-
Nelissen B, Van de Peer Y, Wilmotte A, De Wachter R (1995) An early origin of plastids within the cyanobacterial divergence is suggested by evolutionary trees based on complete 16S rRNA sequences. Mol Biol Evol 12:1166-1173
-
(1995)
Mol Biol Evol
, vol.12
, pp. 1166-1173
-
-
Nelissen, B.1
Van De Peer, Y.2
Wilmotte, A.3
De Wachter, R.4
-
25
-
-
0037381973
-
The phylogenetic position of red algae revealed by multiple nuclear genes from mitochondria-containing eukaryotes and an alternative hypothesis on the origin of plastids
-
Nozaki H, Matsuzaki M, Takahara M, Misumi O, Kuroiwa H, Hasegawa M, et al. (2003) The phylogenetic position of red algae revealed by multiple nuclear genes from mitochondria-containing eukaryotes and an alternative hypothesis on the origin of plastids. J Mol Evol 56:485-497
-
(2003)
J Mol Evol
, vol.56
, pp. 485-497
-
-
Nozaki, H.1
Matsuzaki, M.2
Takahara, M.3
Misumi, O.4
Kuroiwa, H.5
Hasegawa, M.6
-
26
-
-
0037572303
-
Complete sequence and analysis of the plastid genome of the unicellular red alga Cyanidioschyzon merolae
-
Ohta N, Matsuzaki M, Misumi O, Miyagishima S, Nozaki H, Tanaka K, et al. (2003) Complete sequence and analysis of the plastid genome of the unicellular red alga Cyanidioschyzon merolae. DNA Research 10:67-77
-
(2003)
DNA Research
, vol.10
, pp. 67-77
-
-
Ohta, N.1
Matsuzaki, M.2
Misumi, O.3
Miyagishima, S.4
Nozaki, H.5
Tanaka, K.6
-
27
-
-
0022546644
-
Chloroplast gene organization deduced from complete sequence of liverwort Marchantia polymorpha chloroplast DNA
-
Ohyama K, Fukuzawa H, Kohchi T, Shirai H, Sano T, Sano S, et al. (1986) Chloroplast gene organization deduced from complete sequence of liverwort Marchantia polymorpha chloroplast DNA. Nature 322:572-574
-
(1986)
Nature
, vol.322
, pp. 572-574
-
-
Ohyama, K.1
Fukuzawa, H.2
Kohchi, T.3
Shirai, H.4
Sano, T.5
Sano, S.6
-
28
-
-
0002021422
-
The origin and evolution of plastids and their genomes
-
Soltis PS, Soltis DE, Doyle JJ (eds) Kluwer Academic, Boston
-
Palmer JD, Delwiche CF (1998) The origin and evolution of plastids and their genomes. In: Soltis PS, Soltis DE, Doyle JJ (eds) Molecular systematics of plants. II. DNA sequencing. Kluwer Academic, Boston, pp 375-409
-
(1998)
Molecular Systematics of Plants. II. DNA Sequencing
, pp. 375-409
-
-
Palmer, J.D.1
Delwiche, C.F.2
-
29
-
-
0033850202
-
Phylogenetic analyses of various euglenoid taxa (Euglenozoa) based on 18S rDNA sequence data
-
Preisfeld A, Berger S, Busse I, Liller S, Ruppel HG (2000) Phylogenetic analyses of various euglenoid taxa (Euglenozoa) based on 18S rDNA sequence data. J Phycol 36:220-226
-
(2000)
J Phycol
, vol.36
, pp. 220-226
-
-
Preisfeld, A.1
Berger, S.2
Busse, I.3
Liller, S.4
Ruppel, H.G.5
-
30
-
-
0035082732
-
The plastid chromosome of spinach (Spinacia oleracea): Complete nucleotide sequence and gene organization
-
Schmitz-Linneweber C, Maier RM, Alcaraz JP, Cottet A, Herrmann RG, Mache R (2001) The plastid chromosome of spinach (Spinacia oleracea): Complete nucleotide sequence and gene organization. Plant Mol Biol 45:307-315
-
(2001)
Plant Mol Biol
, vol.45
, pp. 307-315
-
-
Schmitz-Linneweber, C.1
Maier, R.M.2
Alcaraz, J.P.3
Cottet, A.4
Herrmann, R.G.5
Mache, R.6
-
32
-
-
0033621040
-
The complete chloroplast DNA sequence of the green alga Nephroselmis olivacea: Insights into the architecture of ancestral chloroplast genomes
-
Turmel M, Otis C, Lemieux C (1999) The complete chloroplast DNA sequence of the green alga Nephroselmis olivacea: Insights into the architecture of ancestral chloroplast genomes. Proc Natl Acad Sci USA 96:10248-10253
-
(1999)
Proc Natl Acad Sci USA
, vol.96
, pp. 10248-10253
-
-
Turmel, M.1
Otis, C.2
Lemieux, C.3
-
33
-
-
0037143760
-
The chloroplast and mitochondrial genome sequences of the charophyte Chaetosphaeridium globosum: Insights into the timing of the events that restructured organelle DNAs within the green algal lineage that led to land plants
-
Turmel M, Otis C, Lemieux C (2002) The chloroplast and mitochondrial genome sequences of the charophyte Chaetosphaeridium globosum: Insights into the timing of the events that restructured organelle DNAs within the green algal lineage that led to land plants. Proc Natl Acad Sci USA 99:11275-11280
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, pp. 11275-11280
-
-
Turmel, M.1
Otis, C.2
Lemieux, C.3
-
34
-
-
0029798360
-
Substitution rate calibration of small subunit ribosomal RNA identifies chlorarachniophyte endosymbionts as remnants of green algae
-
Van de Peer Y, Rensing SA, Maier UG, De Wachter R (1996) Substitution rate calibration of small subunit ribosomal RNA identifies chlorarachniophyte endosymbionts as remnants of green algae. Proc Natl Acad Sci USA 93:7732-7736
-
(1996)
Proc Natl Acad Sci USA
, vol.93
, pp. 7732-7736
-
-
Van De Peer, Y.1
Rensing, S.A.2
Maier, U.G.3
De Wachter, R.4
-
35
-
-
0028043489
-
Loss of all ndh genes as determined by sequencing the entire chloroplast genome of the black pine Pinus thunbergii
-
Wakasugi T, Tsudzuki J, Ito S, Nakashima K, Tsudzuki T, Sugiura M (1994) Loss of all ndh genes as determined by sequencing the entire chloroplast genome of the black pine Pinus thunbergii. Proc Natl Acad Sci USA 91:9794-9798
-
(1994)
Proc Natl Acad Sci USA
, vol.91
, pp. 9794-9798
-
-
Wakasugi, T.1
Tsudzuki, J.2
Ito, S.3
Nakashima, K.4
Tsudzuki, T.5
Sugiura, M.6
-
36
-
-
0003405215
-
-
Special Publication No 19. Museum of Natural History, University of Kansas, Lawrence, KS
-
Wiley EO, Siegel-Causey D, Brooks DR, Funk VA (1991) The compleat cladist: A primer of phylogenetic procedures. Special Publication No 19. Museum of Natural History, University of Kansas, Lawrence, KS
-
(1991)
The Compleat Cladist: A Primer of Phylogenetic Procedures
-
-
Wiley, E.O.1
Siegel-Causey, D.2
Brooks, D.R.3
Funk, V.A.4
-
37
-
-
0037015024
-
A single origin of the peridinin- and fucoxanthin-containing plastids in dinoflagellates through tertiary endosymbiosis
-
Yoon HS, Hackett JD, Bhattacharya D (2002a) A single origin of the peridinin- and fucoxanthin-containing plastids in dinoflagellates through tertiary endosymbiosis. Proc Natl Acad Sci USA 99:11724-11729
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, pp. 11724-11729
-
-
Yoon, H.S.1
Hackett, J.D.2
Bhattacharya, D.3
-
38
-
-
0037180558
-
The single, ancient origin of chromist plastids
-
Yoon HS, Hackett JD, Pinto G, Bhattacharya D (2002b) The single, ancient origin of chromist plastids. Proc Natl Acad Sci USA 99:15507-15512
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, pp. 15507-15512
-
-
Yoon, H.S.1
Hackett, J.D.2
Pinto, G.3
Bhattacharya, D.4
-
39
-
-
0036699481
-
Increased taxon sampling greatly reduces phylogenetic error
-
Zwickl DJ, Hillis DM (2002) Increased taxon sampling greatly reduces phylogenetic error. Syst Biol 51:588-598
-
(2002)
Syst Biol
, vol.51
, pp. 588-598
-
-
Zwickl, D.J.1
Hillis, D.M.2
|