-
1
-
-
4544258087
-
-
(eds Nomura, M., Tissieres, A. & Lengyel, P.) (Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York)
-
Lake, J. A., Sabatini, D. D. & Nonomura, Y. in Ribosomes (eds Nomura, M., Tissieres, A. & Lengyel, P.) 543-557 (Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York, 1974).
-
(1974)
Ribosomes
, pp. 543-557
-
-
Lake, J.A.1
Sabatini, D.D.2
Nonomura, Y.3
-
3
-
-
0003552989
-
-
(National Biomedical Research Foundation, Silver Spring, Maryland)
-
Dayhoff, M. O. Atlas of Protein Sequence and Structure (National Biomedical Research Foundation, Silver Spring, Maryland, 1972).
-
(1972)
Atlas of Protein Sequence and Structure
-
-
Dayhoff, M.O.1
-
4
-
-
0022523096
-
Ribosomal RNA phylogeny and the primary lines of evolutionary descent
-
Pace, N. R., Olsen, G. J. & Woese, C. R. Ribosomal RNA phylogeny and the primary lines of evolutionary descent. Cell 45, 325-326 (1986).
-
(1986)
Cell
, vol.45
, pp. 325-326
-
-
Pace, N.R.1
Olsen, G.J.2
Woese, C.R.3
-
5
-
-
0024285855
-
Origin of the eukaryotic nucleus determined by rate-invariant analysis of ribosomal RNA sequences
-
Lake, J. A. Origin of the eukaryotic nucleus determined by rate-invariant analysis of ribosomal RNA sequences. Nature 331, 184-186 (1988).
-
(1988)
Nature
, vol.331
, pp. 184-186
-
-
Lake, J.A.1
-
6
-
-
0033534584
-
A nonhyperthermophilic common ancestor to extant life forms
-
Galtier, N., Tourasse, N. & Gouy, M. A nonhyperthermophilic common ancestor to extant life forms. Science 283, 220-221 (1999).
-
(1999)
Science
, vol.283
, pp. 220-221
-
-
Galtier, N.1
Tourasse, N.2
Gouy, M.3
-
7
-
-
0024722874
-
Evolution of the vacuolar H+-Atpase-implications for the origin of eukaryotes
-
Gogarten, J. P. et al. Evolution of the vacuolar H+-Atpase-implications for the origin of eukaryotes. Proc. Natl Acad. Sci. USA 86, 6661-6665 (1989).
-
(1989)
Proc. Natl. Acad. Sci. USA
, vol.86
, pp. 6661-6665
-
-
Gogarten, J.P.1
-
8
-
-
0024358140
-
Evolutionary relationship of archaebacteria, eubacteria, and eukaryotes inferred from phylogenetic trees of duplicated genes
-
Iwabe, N., Kuma, K., Hasegawa, M., Osawa, S. & Miyata, T. Evolutionary relationship of archaebacteria, eubacteria, and eukaryotes inferred from phylogenetic trees of duplicated genes. Proc. Natl Acad. Sci. USA 86, 9355-9359 (1989).
-
(1989)
Proc. Natl. Acad. Sci. USA
, vol.86
, pp. 9355-9359
-
-
Iwabe, N.1
Kuma, K.2
Hasegawa, M.3
Osawa, S.4
Miyata, T.5
-
9
-
-
0030293672
-
Higher-plant chloroplast and cytosolic fructose-1,6-bisphosphatase isoenzymes: Origins via duplication rather than prokaryote-eukaryote divergence
-
Martin, W., Mustafa, A. Z., Henze, K. & Schnarrenberger, C. Higher-plant chloroplast and cytosolic fructose-1,6-bisphosphatase isoenzymes: Origins via duplication rather than prokaryote-eukaryote divergence. Plant Mol. Biol. 32, 485-491 (1996).
-
(1996)
Plant Mol. Biol.
, vol.32
, pp. 485-491
-
-
Martin, W.1
Mustafa, A.Z.2
Henze, K.3
Schnarrenberger, C.4
-
10
-
-
0031470387
-
Archaea and the prokaryote-to-eukaryote transition
-
Brown, J. R. & Doolittle, W. F. Archaea and the prokaryote-to- eukaryote transition. Microbiol. Mol. Biol. Rev. 61, 456-502 (1997).
-
(1997)
Microbiol. Mol. Biol. Rev.
, vol.61
, pp. 456-502
-
-
Brown, J.R.1
Doolittle, W.F.2
-
11
-
-
0030696044
-
Determining divergence times with a protein clock: Update and reevaluation
-
Feng, D. F., Cho, G. & Doolittle, R. F. Determining divergence times with a protein clock: Update and reevaluation. Proc. Natl Acad. Sci. USA 94, 13028-13033 (1997).
-
(1997)
Proc. Natl. Acad. Sci. USA
, vol.94
, pp. 13028-13033
-
-
Feng, D.F.1
Cho, G.2
Doolittle, R.F.3
-
12
-
-
0031794743
-
Protein phylogenies and signature sequences: A reappraisal of evolutionary relationships among archaebacteria, eubacteria, and eukaryotes
-
Gupta, R. S. Protein phylogenies and signature sequences: A reappraisal of evolutionary relationships among archaebacteria, eubacteria, and eukaryotes. Microbiol. Mol. Biol. Rev. 62, 1435-1491 (1998).
-
(1998)
Microbiol. Mol. Biol. Rev.
, vol.62
, pp. 1435-1491
-
-
Gupta, R.S.1
-
13
-
-
0032568587
-
Genomic evidence for two functionally distinct gene classes
-
Rivera, M. C., Jain, R., Moore, J. E. & Lake, J. A. Genomic evidence for two functionally distinct gene classes. Proc. Natl Acad. Sci. USA 95, 6239-6244 (1998).
-
(1998)
Proc. Natl. Acad. Sci. USA
, vol.95
, pp. 6239-6244
-
-
Rivera, M.C.1
Jain, R.2
Moore, J.E.3
Lake, J.A.4
-
14
-
-
4143093598
-
A genome phylogeny for mitochondria among α-Proteobacteria and a predominantly eubacterial ancestry of yeast nuclear genes
-
doi:10.1093/molbev/msh160
-
Esser, C. et al. A genome phylogeny for mitochondria among α-Proteobacteria and a predominantly eubacterial ancestry of yeast nuclear genes. Mol. Biol. Evol. doi:10.1093/molbev/msh160 (2004).
-
(2004)
Mol. Biol. Evol.
-
-
Esser, C.1
-
15
-
-
1842332701
-
Compositional biases of bacterial genomes and evolutionary implications
-
Karlin, S., Mrazek, J. & Campbell, A. M. Compositional biases of bacterial genomes and evolutionary implications. J. Bacteriol. 179, 3899-3913 (1997).
-
(1997)
J. Bacteriol.
, vol.179
, pp. 3899-3913
-
-
Karlin, S.1
Mrazek, J.2
Campbell, A.M.3
-
16
-
-
4544319724
-
The tree of life
-
Gogarten, J. P., Hilario, E. & Olendzenski, L. The tree of life. ASM News 63, 404-405 (1997).
-
(1997)
ASM News
, vol.63
, pp. 404-405
-
-
Gogarten, J.P.1
Hilario, E.2
Olendzenski, L.3
-
17
-
-
0033603539
-
Phylogenetic classification and the universal tree
-
Doolittle, W. F. Phylogenetic classification and the universal tree. Science 284, 2124-2128 (1999).
-
(1999)
Science
, vol.284
, pp. 2124-2128
-
-
Doolittle, W.F.1
-
18
-
-
0034001478
-
Lateral gene transfer in prokaryotes
-
Campbell, A. M. Lateral gene transfer in prokaryotes. Theor. Popul. Biol. 57, 71-77 (2000).
-
(2000)
Theor. Popul. Biol.
, vol.57
, pp. 71-77
-
-
Campbell, A.M.1
-
19
-
-
0034671796
-
Evolutionary dynamics of full genome content in Escherichia coli
-
Ochman, H. & Jones, I. B. Evolutionary dynamics of full genome content in Escherichia coli. EMBO J. 19, 6637-6643 (2000).
-
(2000)
EMBO J.
, vol.19
, pp. 6637-6643
-
-
Ochman, H.1
Jones, I.B.2
-
20
-
-
1842505237
-
Deriving the genomic tree of life in the presence of horizontal gene transfer: Conditioned Reconstruction
-
Lake, J. A. & Rivera, M. C. Deriving the genomic tree of life in the presence of horizontal gene transfer: Conditioned Reconstruction. Mol. Biol. Evol. 21, 681-690 (2004).
-
(2004)
Mol. Biol. Evol.
, vol.21
, pp. 681-690
-
-
Lake, J.A.1
Rivera, M.C.2
-
21
-
-
84912351094
-
-
(ed. Srinivasan, R.) (Pergamon, Oxford/New York)
-
Dickerson, R. E. in Diffraction and Related Studies (ed. Srinivasan, R.) 227-249 (Pergamon, Oxford/New York, 1980).
-
(1980)
Diffraction and Related Studies
, pp. 227-249
-
-
Dickerson, R.E.1
-
22
-
-
0032900532
-
Genome phylogeny based on gene content
-
Snel, B., Bork, P. & Huynen, M. A. Genome phylogeny based on gene content. Nature Genet. 21, 108-110 (1999).
-
(1999)
Nature Genet.
, vol.21
, pp. 108-110
-
-
Snel, B.1
Bork, P.2
Huynen, M.A.3
-
23
-
-
0033231209
-
Whole genome-based phylogenetic analysis of free-living microorganisms
-
Fitz-Gibbon, S. T. & House, C. H. Whole genome-based phylogenetic analysis of free-living microorganisms. Nucleic Acids Res. 27, 4218-4222 (1999).
-
(1999)
Nucleic Acids Res.
, vol.27
, pp. 4218-4222
-
-
Fitz-Gibbon, S.T.1
House, C.H.2
-
24
-
-
0032778047
-
The genomic tree as revealed from whole proteome comparisons
-
Tekaia, F., Lazcano, A. & Dujon, B. The genomic tree as revealed from whole proteome comparisons. Genome Res. 9, 550-557 (1999).
-
(1999)
Genome Res.
, vol.9
, pp. 550-557
-
-
Tekaia, F.1
Lazcano, A.2
Dujon, B.3
-
26
-
-
0040120070
-
Mapping evolution with ribosome structure: Intralineage constancy and interlineage variation
-
Lake, J. A., Henderson, E., Clark, M. W. & Matheson, A. T. Mapping evolution with ribosome structure: Intralineage constancy and interlineage variation. Proc. Natl Acad. Sci. USA 79, 5948-5952 (1982).
-
(1982)
Proc. Natl. Acad. Sci. USA
, vol.79
, pp. 5948-5952
-
-
Lake, J.A.1
Henderson, E.2
Clark, M.W.3
Matheson, A.T.4
-
27
-
-
0033525788
-
Mitochondrial evolution
-
Gray, M. W., Burger, G. & Lang, B. F. Mitochondrial evolution. Science 283, 1476-1481 (1999).
-
(1999)
Science
, vol.283
, pp. 1476-1481
-
-
Gray, M.W.1
Burger, G.2
Lang, B.F.3
-
28
-
-
0742323538
-
Endosymbiotic gene transfer: Organelle genomes forge eukaryotic chromosomes
-
Timmis, J. N., Ayliffe, M. A., Huang, C. Y. & Martin, W. Endosymbiotic gene transfer: Organelle genomes forge eukaryotic chromosomes. Nature Rev. Genet. 5, 123-135 (2004).
-
(2004)
Nature Rev. Genet.
, vol.5
, pp. 123-135
-
-
Timmis, J.N.1
Ayliffe, M.A.2
Huang, C.Y.3
Martin, W.4
-
29
-
-
0042266921
-
Reconstruction of the proto mitochondrial metabolism
-
Gabaldon, T. & Huynen, M. A. Reconstruction of the proto mitochondrial metabolism. Science 301, 609 (2003).
-
(2003)
Science
, vol.301
, pp. 609
-
-
Gabaldon, T.1
Huynen, M.A.2
-
30
-
-
0034676438
-
Repeated, recent and diverse transfers of a mitochondrial gene to the nucleus in flowering plants
-
Adams, K. L., Daley, D. O., Qiu, Y. L., Whelan, J. & Palmer, J. D. Repeated, recent and diverse transfers of a mitochondrial gene to the nucleus in flowering plants. Nature 408, 354-357 (2000).
-
(2000)
Nature
, vol.408
, pp. 354-357
-
-
Adams, K.L.1
Daley, D.O.2
Qiu, Y.L.3
Whelan, J.4
Palmer, J.D.5
-
31
-
-
0032762209
-
Evolution of organellar genomes
-
Gray, M. W. Evolution of organellar genomes. Curr. Opin. Genet. Dev. 9, 678-687 (1999).
-
(1999)
Curr. Opin. Genet. Dev.
, vol.9
, pp. 678-687
-
-
Gray, M.W.1
-
32
-
-
0028837682
-
Insertions and duplications of mtDNA in the nuclear genomes of old-world monkeys and hominoids
-
Collura, R. V. & Stewart, C. B. Insertions and duplications of mtDNA in the nuclear genomes of old-world monkeys and hominoids. Nature 378, 485-489 (1995).
-
(1995)
Nature
, vol.378
, pp. 485-489
-
-
Collura, R.V.1
Stewart, C.B.2
-
33
-
-
0028895207
-
A nuclear fossil of the mitochondrial D-loop and the origin of modern humans
-
Zischler, H., Geisert, H., von Haseler, A. & Paabo, A. A nuclear fossil of the mitochondrial D-loop and the origin of modern humans. Nature 378, 489-492 (1995).
-
(1995)
Nature
, vol.378
, pp. 489-492
-
-
Zischler, H.1
Geisert, H.2
Von Haseler, A.3
Paabo, A.4
-
35
-
-
0028344493
-
Cloning of Giardia lamblia heat-shock protein Hsp70 homologs-Implications regarding origin of eukaryotic cells and of endoplasmic-reticulum
-
Gupta, R. S., Aitken, K., Falah, M. & Singh, B. Cloning of Giardia lamblia heat-shock protein Hsp70 homologs-Implications regarding origin of eukaryotic cells and of endoplasmic-reticulum. Proc. Natl Acad. Sci. USA 91, 2895-2899 (1994).
-
(1994)
Proc. Natl. Acad. Sci. USA
, vol.91
, pp. 2895-2899
-
-
Gupta, R.S.1
Aitken, K.2
Falah, M.3
Singh, B.4
-
36
-
-
2642689666
-
The hydrogen hypothesis for the first eukaryote
-
Martin, W. & Muller, M. The hydrogen hypothesis for the first eukaryote. Nature 392, 37-41 (1998).
-
(1998)
Nature
, vol.392
, pp. 37-41
-
-
Martin, W.1
Muller, M.2
-
38
-
-
0031735879
-
Symbiosis between methanogenic archaea and δ-proteobacteria as the origin of eukaryotes: The syntrophic hypothesis
-
Moreira, D. & Lopez-Garcia, P. Symbiosis between methanogenic archaea and δ-proteobacteria as the origin of eukaryotes: The syntrophic hypothesis. J. Mol. Evol. 47, 517-530 (1998).
-
(1998)
J. Mol. Evol.
, vol.47
, pp. 517-530
-
-
Moreira, D.1
Lopez-Garcia, P.2
-
39
-
-
0035150726
-
Origin of eukaryotic cell nuclei by symbiosis of Archaea in Bacteria is revealed by homology-hit analysis
-
Horiike, T., Hamada, K., Kanaya, S. & Shinozawa, T. Origin of eukaryotic cell nuclei by symbiosis of Archaea in Bacteria is revealed by homology-hit analysis. Nature Cell Biol. 3, 210-214 (2001).
-
(2001)
Nature Cell Biol.
, vol.3
, pp. 210-214
-
-
Horiike, T.1
Hamada, K.2
Kanaya, S.3
Shinozawa, T.4
-
40
-
-
0026684272
-
Evidence that eukaryotes and eocyte prokaryotes are immediate relatives
-
Rivera, M. C. & Lake, J. A. Evidence that eukaryotes and eocyte prokaryotes are immediate relatives. Science 257, 74-76 (1992).
-
(1992)
Science
, vol.257
, pp. 74-76
-
-
Rivera, M.C.1
Lake, J.A.2
-
41
-
-
0036061865
-
A phylogenomic approach to bacterial phylogeny: Evidence of a core of genes sharing a common history
-
Daubin, V., Gouy, M. & Perriere, B. A phylogenomic approach to bacterial phylogeny: Evidence of a core of genes sharing a common history. Genome Res. 12, 1080-1090 (2002).
-
(2002)
Genome Res.
, vol.12
, pp. 1080-1090
-
-
Daubin, V.1
Gouy, M.2
Perriere, B.3
-
42
-
-
4544235395
-
Archaeal phylogeny based on proteins of the transcription and translation machineries: Tackling the Methanopyrus kandleri paradox
-
Brochier, C., Forterre, P. & Gribaldo, S. Archaeal phylogeny based on proteins of the transcription and translation machineries: tackling the Methanopyrus kandleri paradox. Genome Biol. 5, R17 (2004).
-
(2004)
Genome Biol.
, vol.5
-
-
Brochier, C.1
Forterre, P.2
Gribaldo, S.3
-
43
-
-
0348044549
-
Genome trees constructed using five different approaches suggest new major bacterial clades
-
Wolf, Y. I., Rogozin, I. B., Grishin, N. V., Tatusov, R. L. & Koonin, E. V. Genome trees constructed using five different approaches suggest new major bacterial clades. BMC Evol. Biol. 1, 8 (2001).
-
(2001)
BMC Evol. Biol.
, vol.1
, pp. 8
-
-
Wolf, Y.I.1
Rogozin, I.B.2
Grishin, N.V.3
Tatusov, R.L.4
Koonin, E.V.5
-
44
-
-
0030801002
-
Gapped BLAST and PSI_BLAST: A new generation of protein database search programs
-
Altschul, S. F. et al. Gapped BLAST and PSI_BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25, 3389-3402 (1997).
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
-
45
-
-
0028181246
-
Reconstructing evolutionary trees from DNA and protein sequences - Paralinear distances
-
Lake, J. A. Reconstructing evolutionary trees from DNA and protein sequences-Paralinear distances. Proc. Natl Acad. Sci. USA 91, 1455-1459 (1994).
-
(1994)
Proc. Natl. Acad. Sci. USA
, vol.91
, pp. 1455-1459
-
-
Lake, J.A.1
-
46
-
-
0028361182
-
Recovering evolutionary trees under a more realistic model of sequence evolution
-
Lockhart, P. J., Steel, M. A., Hendy, M. D. & Penny, D. Recovering evolutionary trees under a more realistic model of sequence evolution. Mol. Biol. Evol. 11, 605-612 (1994).
-
(1994)
Mol. Biol. Evol.
, vol.11
, pp. 605-612
-
-
Lockhart, P.J.1
Steel, M.A.2
Hendy, M.D.3
Penny, D.4
-
47
-
-
0028818280
-
Calculating the probability of multitaxon evolutionary trees - Bootstrappers Gambit
-
Lake, J. A. Calculating the probability of multitaxon evolutionary trees-Bootstrappers Gambit. Proc. Natl Acad. Sci. USA 92, 9662-9666 (1995).
-
(1995)
Proc. Natl. Acad. Sci. USA
, vol.92
, pp. 9662-9666
-
-
Lake, J.A.1
-
48
-
-
0031828814
-
Optimally recovering rate variation information from genomes and sequences: Pattern filtering
-
Lake, J. A. Optimally recovering rate variation information from genomes and sequences: Pattern filtering. Mol. Biol. Evol. 15, 1224-1231 (1998).
-
(1998)
Mol. Biol. Evol.
, vol.15
, pp. 1224-1231
-
-
Lake, J.A.1
-
49
-
-
0025300402
-
Towards a natural system of organisms: Proposal for the domains Archaea, Bacteria and Eucarya
-
Woese, C. R., Kandler, O. & Wheelis, M. L. Towards a natural system of organisms: Proposal for the domains Archaea, Bacteria and Eucarya. Proc. Natl Acad. Sci. USA 87, 4576-4579 (1990).
-
(1990)
Proc. Natl. Acad. Sci. USA
, vol.87
, pp. 4576-4579
-
-
Woese, C.R.1
Kandler, O.2
Wheelis, M.L.3
|