-
2
-
-
0034979318
-
-
Wang, W., Donini, O., Reyes, C. M. & Kollman, P. A. (2001) Annu. Rev. Biophys. Biomol. Struct. 30, 211-243.
-
(2001)
Annu. Rev. Biophys. Biomol. Struct.
, vol.30
, pp. 211-243
-
-
Wang, W.1
Donini, O.2
Reyes, C.M.3
Kollman, P.A.4
-
3
-
-
0036536428
-
-
Hansson, T., Oostenbrink, C. & van Gunsteren, W. (2002) Curr. Opin. Struct. Biol. 12, 190-196.
-
(2002)
Curr. Opin. Struct. Biol.
, vol.12
, pp. 190-196
-
-
Hansson, T.1
Oostenbrink, C.2
Van Gunsteren, W.3
-
4
-
-
0017776823
-
-
McCammon, J. A., Gelin, B. R. & Karplus, M. (1977) Nature 267, 585-590.
-
(1977)
Nature
, vol.267
, pp. 585-590
-
-
McCammon, J.A.1
Gelin, B.R.2
Karplus, M.3
-
8
-
-
0035815288
-
-
Young, M. A., Gonfloni, S., Superti-Furga, G., Roux, B. & Kuriyan, J. (2001) Cell 105, 115-126.
-
(2001)
Cell
, vol.105
, pp. 115-126
-
-
Young, M.A.1
Gonfloni, S.2
Superti-Furga, G.3
Roux, B.4
Kuriyan, J.5
-
10
-
-
11244289541
-
-
Scares, T. A., Daura, X., Oostenbrink, C., Smith, L. J. & van Gunsteren, W. F. (2004) J. Biomol. NMR 30, 407-422.
-
(2004)
J. Biomol. NMR
, vol.30
, pp. 407-422
-
-
Scares, T.A.1
Daura, X.2
Oostenbrink, C.3
Smith, L.J.4
Van Gunsteren, W.F.5
-
11
-
-
10344223464
-
-
Krieger, E., Darden, T., Nabuurs, S. B., Finkelstein, A. & Vriend, G. (2004) Proteins 57, 678-683.
-
(2004)
Proteins
, vol.57
, pp. 678-683
-
-
Krieger, E.1
Darden, T.2
Nabuurs, S.B.3
Finkelstein, A.4
Vriend, G.5
-
12
-
-
0033979148
-
-
Horita, D. A., Zhang, W., Smithgall, T. E., Gmeiner, W. H. & Byrd, R. A. (2000) Protein Sci. 9, 95-103.
-
(2000)
Protein Sci.
, vol.9
, pp. 95-103
-
-
Horita, D.A.1
Zhang, W.2
Smithgall, T.E.3
Gmeiner, W.H.4
Byrd, R.A.5
-
14
-
-
0347357617
-
-
Dobson, C. M. (2003) Nature 426, 884-890.
-
(2003)
Nature
, vol.426
, pp. 884-890
-
-
Dobson, C.M.1
-
15
-
-
0037093655
-
-
Cavalli, A., Ferrara, P. & Caflisch, A. (2002) Proteins 47, 305-314.
-
(2002)
Proteins
, vol.47
, pp. 305-314
-
-
Cavalli, A.1
Ferrara, P.2
Caflisch, A.3
-
16
-
-
0037174385
-
-
Simmerling, C., Strockbine, B. & Roitberg, A. E. (2002) J. Am. Chem. Soc. 124, 11258-11259.
-
(2002)
J. Am. Chem. Soc.
, vol.124
, pp. 11258-11259
-
-
Simmerling, C.1
Strockbine, B.2
Roitberg, A.E.3
-
18
-
-
0344301982
-
-
Dobson, C. M., Sali, A. & Karplus, M. (1998) Angew. Chem. 37, 868-893.
-
(1998)
Angew. Chem.
, vol.37
, pp. 868-893
-
-
Dobson, C.M.1
Sali, A.2
Karplus, M.3
-
21
-
-
0036307683
-
-
Islam, S. A., Karplus, M. & Weaver, D. L. (2002) J. Mol. Biol. 318, 199-215.
-
(2002)
J. Mol. Biol.
, vol.318
, pp. 199-215
-
-
Islam, S.A.1
Karplus, M.2
Weaver, D.L.3
-
22
-
-
0345255608
-
-
Gianni, S., Guydosh, N. R., Khan, F., Caldas, T. D., Mayor, U., White, G. W., DeMarco, M. L., Daggett, V. & Fersht, A. R. (2003) Proc. Natl. Acad. Sci. USA 100, 13286-13291.
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 13286-13291
-
-
Gianni, S.1
Guydosh, N.R.2
Khan, F.3
Caldas, T.D.4
Mayor, U.5
White, G.W.6
DeMarco, M.L.7
Daggett, V.8
Fersht, A.R.9
-
25
-
-
0141704162
-
-
Zhou, R. (2003) Proteins S3, 148-161.
-
(2003)
Proteins S
, vol.3
, pp. 148-161
-
-
Zhou, R.1
-
29
-
-
0002030194
-
-
eds. Gandour, R. D. & Schowen, R. L. (Plenum, New York)
-
Schowen, R. L. (1978) in Transition States of Biochemical Processes, eds. Gandour, R. D. & Schowen, R. L. (Plenum, New York), pp. 77-114.
-
(1978)
Transition States of Biochemical Processes
, pp. 77-114
-
-
Schowen, R.L.1
-
30
-
-
0346726109
-
-
Garcia-Viloca, M., Gao, J., Karplus, M. & Truhlar, D. G. (2004) Science 303, 186-195.
-
(2004)
Science
, vol.303
, pp. 186-195
-
-
Garcia-Viloca, M.1
Gao, J.2
Karplus, M.3
Truhlar, D.G.4
-
32
-
-
0035909316
-
-
Dinner, A. R., Blackburn, G. M. & Karplus, M. (2001) Nature 413, 752-755.
-
(2001)
Nature
, vol.413
, pp. 752-755
-
-
Dinner, A.R.1
Blackburn, G.M.2
Karplus, M.3
-
33
-
-
0346319010
-
-
Fromme, J. C., Brimer, S. D., Yang, W., Karplus, M. & Verdine, G. L. (2003) Nat. Struct. Biol. 10, 204-211.
-
(2003)
Nat. Struct. Biol.
, vol.10
, pp. 204-211
-
-
Fromme, J.C.1
Brimer, S.D.2
Yang, W.3
Karplus, M.4
Verdine, G.L.5
-
34
-
-
0003525155
-
-
Wiley, New York
-
Brooks, C. L., Karplus, M. & Pettitt, B. M. (1988) Proteins: A Theoretical Perspective of Dynamics, Structure and Thermodynamics (Wiley, New York).
-
(1988)
Proteins: A Theoretical Perspective of Dynamics, Structure and Thermodynamics
-
-
Brooks, C.L.1
Karplus, M.2
Pettitt, B.M.3
-
37
-
-
0025015392
-
-
Joseph, D., Petsko, G. A. & Karplus, M. (1990) Science 249, 1425-1428.
-
(1990)
Science
, vol.249
, pp. 1425-1428
-
-
Joseph, D.1
Petsko, G.A.2
Karplus, M.3
-
38
-
-
4143134253
-
-
Kursula, I., Salin, M., Sun, J., Norledge, B. V., Haapalainen, A. M., Sampson, N. S. & Wierenga, R. K. (2004) Protein Eng., Des. Sel. 17, 375-382.
-
(2004)
Protein Eng., Des. Sel.
, vol.17
, pp. 375-382
-
-
Kursula, I.1
Salin, M.2
Sun, J.3
Norledge, B.V.4
Haapalainen, A.M.5
Sampson, N.S.6
Wierenga, R.K.7
-
39
-
-
3042660150
-
-
Schnell, J. R., Dyson, H. J. & Wright, P. E. (2004) Annu. Rev. Biophys. Biomol. Struct. 33, 119-140.
-
(2004)
Annu. Rev. Biophys. Biomol. Struct.
, vol.33
, pp. 119-140
-
-
Schnell, J.R.1
Dyson, H.J.2
Wright, P.E.3
-
41
-
-
0038810233
-
-
Rod, T. H., Radkiewicz, J. L. & Brooks, C. L., III (2003) Proc. Natl Acad. Sci. USA 100, 6980-6985.
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 6980-6985
-
-
Rod, T.H.1
Radkiewicz, J.L.2
Brooks III, C.L.3
-
42
-
-
0037414270
-
-
Watney, J. B., Aganval, P. K. & Hammes-Schiffer, S. (2003) J. Am. Chem. Soc. 125, 3745-3750.
-
(2003)
J. Am. Chem. Soc.
, vol.125
, pp. 3745-3750
-
-
Watney, J.B.1
Aganval, P.K.2
Hammes-Schiffer, S.3
-
44
-
-
18744382866
-
-
Billeter, S. R., Webb, S. P., Iordanov, T., Agarwal, P. K. & Hammes-Schiffer, S. (2001) J. Chem. Phys. 114, 341-349.
-
(2001)
J. Chem. Phys.
, vol.114
, pp. 341-349
-
-
Billeter, S.R.1
Webb, S.P.2
Iordanov, T.3
Agarwal, P.K.4
Hammes-Schiffer, S.5
-
45
-
-
0036282937
-
-
Truhlar, D. G., Gao, J., Alhambra, C., Garcia-Viloca, M., Corchado, J., Sanchez, M. L. & Villa, J. (2002) Acc. Chem. Res. 35, 341-349.
-
(2002)
Acc. Chem. Res.
, vol.35
, pp. 341-349
-
-
Truhlar, D.G.1
Gao, J.2
Alhambra, C.3
Garcia-Viloca, M.4
Corchado, J.5
Sanchez, M.L.6
Villa, J.7
-
46
-
-
0029964954
-
-
Jonsson, T., Glickman, M. H., Sun, S. J. & Klinman, J. P. (1996) J. Am. Chem. Soc. 118, 10319-10320.
-
(1996)
J. Am. Chem. Soc.
, vol.118
, pp. 10319-10320
-
-
Jonsson, T.1
Glickman, M.H.2
Sun, S.J.3
Klinman, J.P.4
-
47
-
-
0033537697
-
-
Basran, J., Sutcliffe, M. J. & Scrutton, N. S. (1999) Biochemistry 38, 3218-3222.
-
(1999)
Biochemistry
, vol.38
, pp. 3218-3222
-
-
Basran, J.1
Sutcliffe, M.J.2
Scrutton, N.S.3
-
48
-
-
0037035975
-
-
Tresadern, G., McNamara, J. P., Mohr, M., Wang, H., Burton, N. A. & Hillier, I. A. (2002) Chem. Phys. Lett. 358, 489-494.
-
(2002)
Chem. Phys. Lett.
, vol.358
, pp. 489-494
-
-
Tresadern, G.1
McNamara, J.P.2
Mohr, M.3
Wang, H.4
Burton, N.A.5
Hillier, I.A.6
-
51
-
-
0028114231
-
-
Abrahams, J. P., Leslie, A. G., Lutter, R. & Walker, J. E. (1994) Nature 370, 621-628.
-
(1994)
Nature
, vol.370
, pp. 621-628
-
-
Abrahams, J.P.1
Leslie, A.G.2
Lutter, R.3
Walker, J.E.4
-
52
-
-
0035838982
-
-
Menz, R. I., Walker, J. E. & Leslie, A. G. (2001) Cell 106, 331-341.
-
(2001)
Cell
, vol.106
, pp. 331-341
-
-
Menz, R.I.1
Walker, J.E.2
Leslie, A.G.3
-
53
-
-
3042640723
-
-
Kinosita, K., Jr., Adachi, K. & Itoh, H. (2004) Annu. Rev. Biophys. Biomol. Struct. 33, 245-268.
-
(2004)
Annu. Rev. Biophys. Biomol. Struct.
, vol.33
, pp. 245-268
-
-
Kinosita Jr., K.1
Adachi, K.2
Itoh, H.3
-
55
-
-
0742270832
-
-
Itoh, H., Takahashi, A., Adachi, K., Noji, H., Yasuda, R., Yoshida, M. & Kinosita, K. (2004) Nature 427, 465-468.
-
(2004)
Nature
, vol.427
, pp. 465-468
-
-
Itoh, H.1
Takahashi, A.2
Adachi, K.3
Noji, H.4
Yasuda, R.5
Yoshida, M.6
Kinosita, K.7
-
56
-
-
1542289939
-
-
Aksimentiev, A., Balabin, I. A., Fillingame, R. H. & Schulten, K. (2004) Biophys. J. 86, 1332-1344.
-
(2004)
Biophys. J.
, vol.86
, pp. 1332-1344
-
-
Aksimentiev, A.1
Balabin, I.A.2
Fillingame, R.H.3
Schulten, K.4
-
57
-
-
3542996325
-
-
Kagawa, R., Montgomery, M. G., Braig, K., Leslie, A. G. & Walker, J. E. (2004) EMBO J. 23, 2734-2744.
-
(2004)
EMBO J.
, vol.23
, pp. 2734-2744
-
-
Kagawa, R.1
Montgomery, M.G.2
Braig, K.3
Leslie, A.G.4
Walker, J.E.5
-
59
-
-
0041843752
-
-
Antes, I., Chandler, D., Wang, H. & Oster, G. (2003) Biophys. J. 85, 695-706.
-
(2003)
Biophys. J.
, vol.85
, pp. 695-706
-
-
Antes, I.1
Chandler, D.2
Wang, H.3
Oster, G.4
-
61
-
-
0036073866
-
-
Ma, J., Flynn, T. C., Cui, Q., Leslie, A. G., Walker, J. E. & Karplus, M. (2002) Structure (Cambridge, MA, U. S.) 10, 921-931.
-
(2002)
Structure (Cambridge, MA, U. S.)
, vol.10
, pp. 921-931
-
-
Ma, J.1
Flynn, T.C.2
Cui, Q.3
Leslie, A.G.4
Walker, J.E.5
Karplus, M.6
-
62
-
-
0037417786
-
-
Yang, W., Gao, Y. Q., Cui, Q., Ma, J. & Karplus, M. (2003) Proc. Natl. Acad. Sci. USA 100, 874-879.
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 874-879
-
-
Yang, W.1
Gao, Y.Q.2
Cui, Q.3
Ma, J.4
Karplus, M.5
-
63
-
-
0141594569
-
-
Gao, Y. Q., Yang, W., Marcus, R. A. & Karplus, M. (2003) Proc. Natl. Acad. Sci. USA 100, 11339-11344.
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 11339-11344
-
-
Gao, Y.Q.1
Yang, W.2
Marcus, R.A.3
Karplus, M.4
-
64
-
-
0036424048
-
-
Bolhuis, P. G., Chandler, D., Dellago, C. & Geissler, P. L. (2002) Anna. Rev. Phys. Chem. 53, 291-318.
-
(2002)
Anna. Rev. Phys. Chem.
, vol.53
, pp. 291-318
-
-
Bolhuis, P.G.1
Chandler, D.2
Dellago, C.3
Geissler, P.L.4
-
66
-
-
2942511344
-
-
Cui, Q., Li, G., Ma, J. & Karplus, M. (2004) J. Mol. Biol. 340, 345-372.
-
(2004)
J. Mol. Biol.
, vol.340
, pp. 345-372
-
-
Cui, Q.1
Li, G.2
Ma, J.3
Karplus, M.4
-
67
-
-
7944231535
-
-
Martin, G. S. (2004) Oncogene 23, 7910-7917.
-
(2004)
Oncogene
, vol.23
, pp. 7910-7917
-
-
Martin, G.S.1
-
69
-
-
0031034930
-
-
Sicheri, F., Moarefi, I. & Kuriyan, J. (1997) Nature 385, 602-609.
-
(1997)
Nature
, vol.385
, pp. 602-609
-
-
Sicheri, F.1
Moarefi, I.2
Kuriyan, J.3
-
70
-
-
0031025991
-
-
Xu, W., Harrison, S. C. & Eck, M. J. (1997) Nature 385, 595-602.
-
(1997)
Nature
, vol.385
, pp. 595-602
-
-
Xu, W.1
Harrison, S.C.2
Eck, M.J.3
-
72
-
-
0033515632
-
-
Engen, J. R., Smithgall, T. E., Gmeiner, W. H. & Smith, D. L. (1999) J. Mol. Biol. 287, 645-656.
-
(1999)
J. Mol. Biol.
, vol.287
, pp. 645-656
-
-
Engen, J.R.1
Smithgall, T.E.2
Gmeiner, W.H.3
Smith, D.L.4
-
73
-
-
0035907348
-
-
Arold, S. T., Ulmer, T. S., Mulhern, T. D., Werner, J. M., Ladbury, J. E., Campbell, I. D. & Noble, M. E. (2001) J. Biol. Chem. 276, 17199-17205.
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 17199-17205
-
-
Arold, S.T.1
Ulmer, T.S.2
Mulhern, T.D.3
Werner, J.M.4
Ladbury, J.E.5
Campbell, I.D.6
Noble, M.E.7
-
74
-
-
0034723158
-
-
Laity, J. H., Dyson, H. J. & Wright, P. E. (2000) J. Mol. Biol. 295, 719-727.
-
(2000)
J. Mol. Biol.
, vol.295
, pp. 719-727
-
-
Laity, J.H.1
Dyson, H.J.2
Wright, P.E.3
-
75
-
-
0344626926
-
-
Nagar, B., Hantschel, O., Young, M. A., Scheffzek, K., Veach, D., Bornmann, W., Clarkson, B., Superti-Furga, G. & Kuriyan, J. (2003) Cell 112, 859-871.
-
(2003)
Cell
, vol.112
, pp. 859-871
-
-
Nagar, B.1
Hantschel, O.2
Young, M.A.3
Scheffzek, K.4
Veach, D.5
Bornmann, W.6
Clarkson, B.7
Superti-Furga, G.8
Kuriyan, J.9
-
76
-
-
0344626925
-
-
Hantschel, O., Nagar, B., Guettler, S., Kretzschmar, J., Dorey, K., Kuriyan, J. & Superti-Furga, G. (2003) Cell 112, 845-857.
-
(2003)
Cell
, vol.112
, pp. 845-857
-
-
Hantschel, O.1
Nagar, B.2
Guettler, S.3
Kretzschmar, J.4
Dorey, K.5
Kuriyan, J.6
Superti-Furga, G.7
-
77
-
-
0035935998
-
-
Brasher, B. B., Roumiantsev, S. & Van Etten, R. A. (2001) Oncogene 20, 7744-7752.
-
(2001)
Oncogene
, vol.20
, pp. 7744-7752
-
-
Brasher, B.B.1
Roumiantsev, S.2
Van Etten, R.A.3
-
79
-
-
0034665713
-
-
Schindler, T., Bornmann, W., Pellicena, P., Miller, W. T., Clarkson, B. & Kuriyan, J. (2000) Science 289, 1938-1942.
-
(2000)
Science
, vol.289
, pp. 1938-1942
-
-
Schindler, T.1
Bornmann, W.2
Pellicena, P.3
Miller, W.T.4
Clarkson, B.5
Kuriyan, J.6
-
80
-
-
0036682301
-
-
Nagar, B., Bornmann, W. G., Pellicena, P., Schindler, T., Veach, D. R., Miller, W. T., Clarkson, B. & Kuriyan, J. (2002) Cancer Res. 62, 4236-4243.
-
(2002)
Cancer Res.
, vol.62
, pp. 4236-4243
-
-
Nagar, B.1
Bornmann, W.G.2
Pellicena, P.3
Schindler, T.4
Veach, D.R.5
Miller, W.T.6
Clarkson, B.7
Kuriyan, J.8
|