Understanding protein lids: Structural analysis of active hinge mutants in triosephosphate isomerase

Protein Engineering, Design and Selection

Volumn 17, Issue 4, 2004, Pages 375-382

  Kursula, I ^a,b   Salin, M ^a   Sun, J ^c,d   Norledge, B V ^a,e   Haapalainen, A M ^a   Sampson, N S ^c   Wierenga, R K ^a  

^a UNIVERSITY OF OULU   (Finland)

^b EUROPEAN MOLECULAR BIOLOGY LABORATORY   (Germany)

^c STONY BROOK UNIVERSITY   (United States)

^d UNIVERSITY OF CALIFORNIA   (United States)

^e SCRIPPS RESEARCH INSTITUTE   (United States)

Author keywords

Archae; Evolution; Flexible loop; Structure triosephosphate isomerase

Indexed keywords

MUTANT PROTEIN; TRIOSEPHOSPHATE ISOMERASE;

ADAPTATION; AMINO ACID SEQUENCE; ARTICLE; CARBOXY TERMINAL SEQUENCE; CATALYSIS; CHICKEN; CONTROLLED STUDY; ENZYME CONFORMATION; ENZYMOLOGY; NONHUMAN; PRIORITY JOURNAL; PROTEIN STRUCTURE; STRUCTURE ANALYSIS; WILD TYPE;

ANIMALS; CHICKENS; DIRECTED MOLECULAR EVOLUTION; MODELS, MOLECULAR; MUTATION; PROTEIN CONFORMATION; SEQUENCE HOMOLOGY, AMINO ACID; TRIOSE-PHOSPHATE ISOMERASE;

GALLUS GALLUS;

EID: 4143134253     PISSN: 17410126     EISSN: None     Source Type: Journal    
DOI: 10.1093/protein/gzh048     Document Type: Article

References (35)

1. Aparicio, R., Ferreira, S.T. and Polikarpov, I. (2003) J. Mol. Biol., 334, 1023-1041.
2. Campbell, I.D., Jones, R.B., Kiener, P.A., Richards, E., Waley, S.C. and Wolfenden, R. (1978) Biochem. Biophys. Res. Commun., 83, 347-352.
3. Collaborative Computational Project Number 4 (1994) Acta Crystallogr., D50, 760-763.
4. Desamero, R., Rozovsky, S., Zhadin, N., McDermott, A. and Callender, R. (2003) Biochemistry, 42, 2941-2951.
5. Gunasekaran, K. and Nussinov, R. (2004) ChemBioChem, 5, 224-230.
6. Jeanmougin, F., Thompson, J.D., Gouy, M., Higgins, D.G. and Gibson, T.J. (1998) Trends Biochem. Sci., 23, 403-405.
7. Jogl, G., Rozovsky, S., McDermott, A.E. and Tong, L. (2003) Proc. Natl Acad. Sci. USA, 100, 50-55.
8. Jones, T.A., Zou, J.Y., Cowan, S.W. and Kjeldgaard, M. (1991) Acta Crystallogr., A47, 110-119.
9. Joseph, D., Petsko, G.A. and Karplus, M. (1990) Science, 249, 1425-1428.
10. Kabsch, W. (1993) J. Appl. Crystallogr., 26, 795-800.
11. Kishan, K.V., Zeelen, J.P., Noble, M.E., Borchert, T.V. and Wierenga, R.K. (1994) Protein Sci., 3, 779-787.
12. Knowles, J.R. (1991) Nature, 350, 121-124.
13. Kursula, I. and Wierenga, R.K. (2003) J. Biol. Chem., 278, 9544-9551.
14. Kursula, I., Partanen, S., Lambeir, A.M., Antonov, D.M., Augustyns, K. and Wierenga, R.K. (2001) Eur. J. Biochem., 268, 5189-5196.
15. Laskowski, R.A., MacArthur, M.W., Moss, D.S. and Thomton, J.M. (1993) J. Appl. Crystallogr., 26, 283-291.
16. Lolis, E. and Petsko, G.A. (1990) Biochemistry, 29, 6619-6625.
17. Murshudov, G.N., Vagin, A.A. and Dodson, E.J. (1997) Acta Crystallogr., D55, 247-255.
18. Navaza, J. (1994) Acta Crystallogr., A50, 157-163.
19. Noble, M.E.M., Zeelen, J. Ph. and Wierenga, R.K. (1993) Proteins, 16, 311-326.
20. Otwinovski, Z. and Minor, W (1997) Methods Enzymol., 276, 307-326.
21. Parthasarathy, S., Ravindra, G., Balaram, H., Balaram, P. and Murthy, M.R. (2002) Biochemistry, 41, 13178-13188.
22. Philippsen, A. (2001) DINO: Visualizing Structural Biology. http://www/bioz.unibas.ch/~xray/dino.
23. Rozovsky, S. and McDermott, A.E. (2001) J. Mol. Biol., 310, 259-270.
24. Rozovsky, S., Jogl, G., Tong, L. and McDermott, A.E. (2001) J. Mol. Biol., 310, 271-280.
25. Sampson, N.S. and Knowles, J.R. (1992) Biochemistry, 31, 8488-8494.
26. Schomaker, V. and Trueblood, K.N. (1968) Acta Crystallogr., B24, 63-76.
27. Sun, J. and Sampson, N.S. (1998) Protein Sci., 7, 1495-1505.
28. Sun, J. and Sampson, N.S. (1999) Biochemistry, 38, 11474-11481.
29. Walden, H., Bell, G.S., Russell, R.J., Siebers, B., Hensel, R. and Taylor, G.L. (2001) J. Mol. Biol., 306, 745-757.
30. Wierenga, R.K., Noble, M.E.M., Postma, J.P.M., Groendijk, H., Kalk, K.H., Hol, W.G.J. and Opperdoes, F.R. (1991a) Proteins, 10, 33-49.
31. Wierenga, R.K., Noble, M.E.M., Vriend, G., Nauche, S. and Hol, W.G.J. (1991b) J. Mol. Biol., 220, 995-1015.
32. Williams, J.C. and McDermott, A.E. (1995) Biochemistry, 34, 8309-8319.
33. Winn, M.D., Isupov, M.N. and Murshudov, G.N. (2001) Acta Crystallogr., D57, 122-133.
34. Xiang, J., Sun, J. and Sampson, N.S. (2001) J. Mol. Biol., 307, 1103-1112.
35. Zeelen, J.Ph., Hiltunen, J.K., Ceska, T.A. and Wierenga, R.K. (1994) Acta Crystallogr., D50, 443-447.