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This paper presents the application of QM-MM and classical molecular dynamics methods to hydride transfer in DHFR. The analysis focuses on the effect of the Asp27 ionization state on the hydride transfer step.
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The authors present the application of a hybrid quantum-classical molecular dynamics method to hydride transfer in a mutant DHFR enzyme. The simulations indicate that distal mutations can increase the activation free energy by altering the equilibrium conformational motions that lead to configurations conducive to the reaction.
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The authors investigate sidechain motions in DHFR through the measurement of methyl deuterium relaxation rates and sidechain coupling constants. The analysis suggests the presence of sidechain motions on a microsecond or millisecond timescale.
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Schnell J.R., Dyson H.J., Wright P.E. Effect of cofactor binding and loop conformation on side chain methyl dynamics in dihydrofolate reductase. Biochemistry. 43:2004;374-383 The authors investigate sidechain motions in DHFR through the measurement of methyl deuterium relaxation rates and sidechain coupling constants. The analysis suggests the presence of sidechain motions on a microsecond or millisecond timescale.
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