-
2
-
-
0037458716
-
Aqueous access channels in subunit a of rotary ATP synthase
-
Angevine, C. M., and R. H. Fillingame. 2003. Aqueous access channels in subunit a of rotary ATP synthase. J. Biol. Chem. 278:6066-6074.
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 6066-6074
-
-
Angevine, C.M.1
Fillingame, R.H.2
-
3
-
-
0035449971
-
Optimized particle-mesh Ewald/multiple-time step integration for molecular dynamics simulations
-
Batcho, P. F., D. A. Case, and T. Schlick. 2001. Optimized particle-mesh Ewald/multiple-time step integration for molecular dynamics simulations. J. Chem. Phys. 115:4003-4018.
-
(2001)
J. Chem. Phys.
, vol.115
, pp. 4003-4018
-
-
Batcho, P.F.1
Case, D.A.2
Schlick, T.3
-
4
-
-
0004232671
-
-
Princeton University Press, Princeton, NJ
-
Berg, H. editor. 1983. Random Walks in Biology. Princeton University Press, Princeton, NJ.
-
(1983)
Random Walks in Biology
-
-
Berg, H.1
-
6
-
-
0031008228
-
The ATP synthase - A splendid molecular machine
-
Boyer, P. D. 1997. The ATP synthase-a splendid molecular machine. Annu. Rev. Biochem. 66:717-749.
-
(1997)
Annu. Rev. Biochem.
, vol.66
, pp. 717-749
-
-
Boyer, P.D.1
-
7
-
-
0034737943
-
Catalytic site forms and controls in ATP synthase catalysis
-
Boyer, P. D. 2000. Catalytic site forms and controls in ATP synthase catalysis. Biochim. Biophys. Acta Bioener. 1458:252-262.
-
(2000)
Biochim. Biophys. Acta Bioener.
, vol.1458
, pp. 252-262
-
-
Boyer, P.D.1
-
8
-
-
0003769049
-
-
The Howard Hughes Medical Institute and Department of Molecular Biophysics and Biochemistry. Yale University Press, New Haven, CT
-
Brünger, A. T. 1992. X-PLOR, Version 3.1: A System for X-Ray Crystallography and NMR. The Howard Hughes Medical Institute and Department of Molecular Biophysics and Biochemistry. Yale University Press, New Haven, CT.
-
(1992)
X-PLOR, Version 3.1: A System for X-Ray Crystallography and NMR
-
-
Brünger, A.T.1
-
9
-
-
0033609081
-
Energy transduction in the sodium F-ATPase of Propionigenium modestum
-
Dimroth, P., H. Y. Wang, M. Grabe, and G. Oster. 1999. Energy transduction in the sodium F-ATPase of Propionigenium modestum. Proc. Natl. Acad. Sci. USA. 96:4924-4929.
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 4924-4929
-
-
Dimroth, P.1
Wang, H.Y.2
Grabe, M.3
Oster, G.4
-
10
-
-
0033529291
-
0 ATP synthase: Model derived from solution structure of the monomer and cross-linking in the native enzyme
-
0 ATP synthase: model derived from solution structure of the monomer and cross-linking in the native enzyme. Proc. Natl. Acad. Sci, USA. 96:7785-7790.
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 7785-7790
-
-
Dmitriev, O.1
Jones, P.C.2
Fillingame, R.H.3
-
11
-
-
0034536458
-
The b-subunit of Escherichia coli ATP synthase
-
Dunn, S. D., M. Revington, D. J. Cipriano, and B. H. Shilton. 2000. The b-subunit of Escherichia coli ATP synthase. J. Bioener. Biomem. 32:347-355.
-
(2000)
J. Bioener. Biomem.
, vol.32
, pp. 347-355
-
-
Dunn, S.D.1
Revington, M.2
Cipriano, D.J.3
Shilton, B.H.4
-
12
-
-
0032576724
-
Energy transduction in ATP synthase
-
Elston, T., H. Wang, and G. Oster. 1998. Energy transduction in ATP synthase. Nature. 391:510-513.
-
(1998)
Nature
, vol.391
, pp. 510-513
-
-
Elston, T.1
Wang, H.2
Oster, G.3
-
14
-
-
0033960457
-
+ transport to rotary catalysis in F-type ATP synthases: Structure and organization of the transmembrane rotary motor
-
+ transport to rotary catalysis in F-type ATP synthases: structure and organization of the transmembrane rotary motor. J. Exp. Biol. 203:9-17.
-
(2000)
J. Exp. Biol.
, vol.203
, pp. 9-17
-
-
Fillingame, R.H.1
Jiang, W.2
Dmitriev, O.Y.3
-
18
-
-
0034737935
-
Molecular models of structural arrangement of subunits and the mechanism of proton translocation in the membrane domain
-
Groth, G. 2000. Molecular models of structural arrangement of subunits and the mechanism of proton translocation in the membrane domain. Biochim. Biophys. Acta. 1458:417-427.
-
(2000)
Biochim. Biophys. Acta
, vol.1458
, pp. 417-427
-
-
Groth, G.1
-
19
-
-
0030059225
-
Ligand binding and molecular mechanics calculation of the streptavidin-biotin rupture force
-
Grubmüller, H., B. Heymann, and P. Tavan. 1996. Ligand binding and molecular mechanics calculation of the streptavidin-biotin rupture force. Science. 271:997-999.
-
(1996)
Science
, vol.271
, pp. 997-999
-
-
Grubmüller, H.1
Heymann, B.2
Tavan, P.3
-
20
-
-
0035923515
-
1-ATPase during catalysis
-
1-ATPase during catalysis. Proc. Natl. Acad. Sci. USA. 98:13649-13654.
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 13649-13654
-
-
Hirono-Hara, Y.1
Noji, H.2
Nishiura, M.3
Muneyuki, E.4
Hara, K.Y.5
Yasuda, R.6
Kinosita Jr., K.7
Yoshida, M.8
-
21
-
-
0035003803
-
Steered molecular dynamics investigations of protein function
-
Isralewitz, B., J. Baudry, J. Gullingsrud, D. Kosztin, and K. Schulten. 2001a. Steered molecular dynamics investigations of protein function. J. Mol. Graph. Model. 19:13-25. Also in Protein Flexibility and Folding, Biological Modeling Series. 2001. L. A. Kuhn and M. F. Thorpe, editors. Elsevier, New York.
-
(2001)
J. Mol. Graph. Model
, vol.19
, pp. 13-25
-
-
Isralewitz, B.1
Baudry, J.2
Gullingsrud, J.3
Kosztin, D.4
Schulten, K.5
-
22
-
-
0035003803
-
-
L. A. Kuhn and M. F. Thorpe, editors. Elsevier, New York
-
Isralewitz, B., J. Baudry, J. Gullingsrud, D. Kosztin, and K. Schulten. 2001a. Steered molecular dynamics investigations of protein function. J. Mol. Graph. Model. 19:13-25. Also in Protein Flexibility and Folding, Biological Modeling Series. 2001. L. A. Kuhn and M. F. Thorpe, editors. Elsevier, New York.
-
(2001)
Protein Flexibility and Folding, Biological Modeling Series
-
-
-
23
-
-
0035312645
-
Steered molecular dynamics and mechanical functions of proteins
-
Isralewitz, B., M. Gao, and K. Schulten. 2001b. Steered molecular dynamics and mechanical functions of proteins. Curr. Op. Struct. Biol. 11:224-230.
-
(2001)
Curr. Op. Struct. Biol.
, vol.11
, pp. 224-230
-
-
Isralewitz, B.1
Gao, M.2
Schulten, K.3
-
24
-
-
0037076420
-
Energetics of glycerol conduction through aquaglyceroporin GlpF
-
Jensen, M. Ø., S. Park, E. Tajkhorshid, and K. Schulten. 2002. Energetics of glycerol conduction through aquaglyceroporin GlpF. Proc. Natl. Acad. Sci. USA. 99:6731-6736.
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 6731-6736
-
-
Jensen, M.Ø.1
Park, S.2
Tajkhorshid, E.3
Schulten, K.4
-
25
-
-
0032499690
-
o ATP synthase of Escherichia coli defined by disulfide cross-linking
-
o ATP synthase of Escherichia coli defined by disulfide cross-linking. Proc. Natl. Acad. Sci. USA. 95:6607-6612.
-
(1998)
Proc. Natl. Acad. Sci. USA
, vol.95
, pp. 6607-6612
-
-
Jiang, W.1
Fillingame, R.H.2
-
26
-
-
0035942281
-
The preferred stoichiometry of c-subunits in the rotary motor sector of Escherichia coli ATP synthase is 10
-
Jiang, W., J. Hermolin, and R. H. Fillingame. 2001. The preferred stoichiometry of c-subunits in the rotary motor sector of Escherichia coli ATP synthase is 10. Proc. Natl. Acad. Sci. USA. 98:4966-4971.
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 4966-4971
-
-
Jiang, W.1
Hermolin, J.2
Fillingame, R.H.3
-
28
-
-
0030715561
-
ATP synthase: An electrochemical transducer with rotary mechanics
-
Junge, W., H. Lill, and S. Engelbrecht. 1997. ATP synthase: an electrochemical transducer with rotary mechanics. Trends Biochem. Sci. 22:420-423.
-
(1997)
Trends Biochem. Sci.
, vol.22
, pp. 420-423
-
-
Junge, W.1
Lill, H.2
Engelbrecht, S.3
-
31
-
-
0042415783
-
NAMD2: Greater scalability for parallel molecular dynamics
-
Kalé, L., R. Skeel, M. Bhandarkar, R. Brunner, A. Gursoy, N. Krawetz, J. Phillips, A. Shinozaki, K. Varadarajan, and K. Schulten. 1999. NAMD2: greater scalability for parallel molecular dynamics. J. Comput. Phys. 151:283-312.
-
(1999)
J. Comput. Phys.
, vol.151
, pp. 283-312
-
-
Kalé, L.1
Skeel, R.2
Bhandarkar, M.3
Brunner, R.4
Gursoy, A.5
Krawetz, N.6
Phillips, J.7
Shinozaki, A.8
Varadarajan, K.9
Schulten, K.10
-
34
-
-
0000224283
-
CHARMM: The energy function and its parameterization with an overview of the program
-
P. v. R. Schleyer, editor. John Wiley ′ Sons, Chichester, UK
-
MacKerell, A. D., Jr., B. Brooks, C. L. Brooks III, L. Nilsson, B. Roux, Y. Won, and M. Karplus. 1998. CHARMM: The energy function and its parameterization with an overview of the program. In The Encyclopedia of Computational Chemistry. P. v. R. Schleyer, editor. John Wiley ′ Sons, Chichester, UK.
-
(1998)
The Encyclopedia of Computational Chemistry
-
-
MacKerell Jr., A.D.1
Brooks, B.2
Brooks III, C.L.3
Nilsson, L.4
Roux, B.5
Won, Y.6
Karplus, M.7
-
35
-
-
36449003554
-
Constant pressure molecular dynamics algorithms
-
Martyna, G. J., D. J. Tobias, and M. L. Klein. 1994. Constant pressure molecular dynamics algorithms. J. Chem. Phys. 101:4177-4189.
-
(1994)
J. Chem. Phys.
, vol.101
, pp. 4177-4189
-
-
Martyna, G.J.1
Tobias, D.J.2
Klein, M.L.3
-
37
-
-
0035838982
-
1-ATPase with nucleotide bound to all three catalytic sites: Implications for the mechanism of rotary catalysis
-
1-ATPase with nucleotide bound to all three catalytic sites: implications for the mechanism of rotary catalysis. Cell. 106:331-341.
-
(2001)
Cell
, vol.106
, pp. 331-341
-
-
Menz, R.I.1
Walker, J.E.2
Leslie, A.G.W.3
-
38
-
-
0141525850
-
Molecular motors: Theory and experiment
-
C. Fall, E. Marland, J. Wagner, and J. Tyson, editors. Springer, New York
-
Mogilner, A., H. Wang, T. Elston, and G. Oster. 2002. Molecular motors: theory and experiment. In Computational Cell Biology. C. Fall, E. Marland, J. Wagner, and J. Tyson, editors. Springer, New York.
-
(2002)
Computational Cell Biology
-
-
Mogilner, A.1
Wang, H.2
Elston, T.3
Oster, G.4
-
42
-
-
0043268848
-
Reaction paths based on mean first-passage times
-
Park, S., M. K. C. Sener, D. Lu, and K. Schulten. 2003. Reaction paths based on mean first-passage times. J. Chem. Phys. 119:1313-1319.
-
(2003)
J. Chem. Phys.
, vol.119
, pp. 1313-1319
-
-
Park, S.1
Sener, M.K.C.2
Lu, D.3
Schulten, K.4
-
43
-
-
0033581879
-
Structural changes linked to proton translocation by subunit c of the ATP synthase
-
Rastogi, V. K., and M. E. Girvin. 1999. Structural changes linked to proton translocation by subunit c of the ATP synthase. Nature. 402:263-268.
-
(1999)
Nature
, vol.402
, pp. 263-268
-
-
Rastogi, V.K.1
Girvin, M.E.2
-
44
-
-
0033607622
-
1): Direct observation
-
1): direct observation. Science. 286:1722-1724.
-
(1999)
Science
, vol.286
, pp. 1722-1724
-
-
Sambongi, Y.1
Iko, Y.2
Tanabe, M.3
Omote, H.4
Iwamoto-Kihara, A.5
Ueda, I.6
Yanagida, T.7
Wada, Y.8
Futai, M.9
-
45
-
-
0034713072
-
Structural biology-proton-powered turbine of a plant motor
-
Seelert, H., A. Poetsch, N. A. Dencher, A. Engel, H. Stahlberg, and D. J. Muller. 2000. Structural biology-proton-powered turbine of a plant motor. Nature. 405:418-419.
-
(2000)
Nature
, vol.405
, pp. 418-419
-
-
Seelert, H.1
Poetsch, A.2
Dencher, N.A.3
Engel, A.4
Stahlberg, H.5
Muller, D.J.6
-
46
-
-
0023839098
-
ATP synthesis by oxidative-phosphorylation
-
Senior, A. E. 1988. ATP synthesis by oxidative-phosphorylation. Physiol. Rev. 68:177-231.
-
(1988)
Physiol. Rev.
, vol.68
, pp. 177-231
-
-
Senior, A.E.1
-
47
-
-
0033607504
-
Molecular architecture of the rotary motor in ATP synthase
-
Stock, D., A. G. W. Leslie, and J. E. Walker. 1999. Molecular architecture of the rotary motor in ATP synthase. Science. 286:1700-1705.
-
(1999)
Science
, vol.286
, pp. 1700-1705
-
-
Stock, D.1
Leslie, A.G.W.2
Walker, J.E.3
-
48
-
-
0035805640
-
Rotation of a complex of the γ-subunit and c-ring of Escherichia coli ATP synthase-the rotor and stator are interchangeable
-
Tanabe, M., K. Nishio, Y. Iko, Y. Sambongi, A. Iwamoto-Kihara, Y. Wada, and M. Futai. 2001. Rotation of a complex of the γ-subunit and c-ring of Escherichia coli ATP synthase-the rotor and stator are interchangeable. J. Biol. Chem. 276:15269-15274.
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 15269-15274
-
-
Tanabe, M.1
Nishio, K.2
Iko, Y.3
Sambongi, Y.4
Iwamoto-Kihara, A.5
Wada, Y.6
Futai, M.7
|