-
2
-
-
0037038361
-
Structure of a T7 RNA polymerase elongation complex at 2.9 Å resolution
-
T.H. Tahirov, D. Temiakov, M. Anikin, V. Patlan, W.T. McAllister, D.G. Vassylyev, and S. Yokoyama Structure of a T7 RNA polymerase elongation complex at 2.9 Å resolution Nature 420 2002 43 50
-
(2002)
Nature
, vol.420
, pp. 43-50
-
-
Tahirov, T.H.1
Temiakov, D.2
Anikin, M.3
Patlan, V.4
McAllister, W.T.5
Vassylyev, D.G.6
Yokoyama, S.7
-
3
-
-
0033578701
-
Crystal structure of Thermus aquaticus core RNA polymerase at 3.3 Å resolution
-
G. Zhang, E.A. Campbell, L. Minakhin, C. Richter, K. Severinov, and S.A. Darst Crystal structure of Thermus aquaticus core RNA polymerase at 3.3 Å resolution Cell 98 1999 811 824
-
(1999)
Cell
, vol.98
, pp. 811-824
-
-
Zhang, G.1
Campbell, E.A.2
Minakhin, L.3
Richter, C.4
Severinov, K.5
Darst, S.A.6
-
5
-
-
0028919060
-
The sigma factors of Bacillus subtilis
-
W.G. Haldenwang The sigma factors of Bacillus subtilis Microbiol. Rev. 59 1995 1 30
-
(1995)
Microbiol. Rev.
, vol.59
, pp. 1-30
-
-
Haldenwang, W.G.1
-
6
-
-
0025132506
-
Cascades of sigma factors revisited
-
P. Stragier, and R. Losick Cascades of sigma factors revisited Mol. Microbiol. 4 1990 1801 1806
-
(1990)
Mol. Microbiol.
, vol.4
, pp. 1801-1806
-
-
Stragier, P.1
Losick, R.2
-
7
-
-
0033436323
-
Eukaryotic transcriptional control
-
R.D. Kornberg Eukaryotic transcriptional control Trends Cell Biol. 9 1999 46 49
-
(1999)
Trends Cell Biol.
, vol.9
, pp. 46-49
-
-
Kornberg, R.D.1
-
8
-
-
0032451112
-
Mechanism and regulation of yeast RNA polymerase II transcription
-
R.D. Kornberg Mechanism and regulation of yeast RNA polymerase II transcription Cold Spring Harb. Symp. Quant. Biol. 63 1998 229 232
-
(1998)
Cold Spring Harb. Symp. Quant. Biol.
, vol.63
, pp. 229-232
-
-
Kornberg, R.D.1
-
9
-
-
0020616785
-
Many gene-regulatory proteins appear to have a similar α-helical fold that binds DNA and evolved from a common precursor
-
D.H. Ohlendorf, W.F. Anderson, and B.W. Matthews Many gene-regulatory proteins appear to have a similar α-helical fold that binds DNA and evolved from a common precursor J. Mol. Evol. 19 1983 109 114
-
(1983)
J. Mol. Evol.
, vol.19
, pp. 109-114
-
-
Ohlendorf, D.H.1
Anderson, W.F.2
Matthews, B.W.3
-
10
-
-
0019956313
-
The molecular basis of DNA-protein recognition inferred from the structure of cro repressor
-
D.H. Ohlendorf, W.F. Anderson, R.G. Fisher, Y. Takeda, and B.W. Matthews The molecular basis of DNA-protein recognition inferred from the structure of cro repressor Nature 298 1982 718 723
-
(1982)
Nature
, vol.298
, pp. 718-723
-
-
Ohlendorf, D.H.1
Anderson, W.F.2
Fisher, R.G.3
Takeda, Y.4
Matthews, B.W.5
-
11
-
-
0019974092
-
Homology among DNA-binding proteins suggests use of a conserved super-secondary structure
-
R.T. Sauer, R.R. Yocum, R.F. Doolittle, M. Lewis, and C.O. Pabo Homology among DNA-binding proteins suggests use of a conserved super-secondary structure Nature 298 1982 447 451
-
(1982)
Nature
, vol.298
, pp. 447-451
-
-
Sauer, R.T.1
Yocum, R.R.2
Doolittle, R.F.3
Lewis, M.4
Pabo, C.O.5
-
12
-
-
0347445017
-
Structural similarity in the DNA-binding domains of catabolite gene activator and cro repressor proteins
-
T.A. Steitz, D.H. Ohlendorf, D.B. McKay, W.F. Anderson, and B.W. Matthews Structural similarity in the DNA-binding domains of catabolite gene activator and cro repressor proteins Proc. Natl. Acad. Sci. USA 79 1982 3097 3100
-
(1982)
Proc. Natl. Acad. Sci. USA
, vol.79
, pp. 3097-3100
-
-
Steitz, T.A.1
Ohlendorf, D.H.2
McKay, D.B.3
Anderson, W.F.4
Matthews, B.W.5
-
13
-
-
0019952363
-
Structure of the DNA-binding region of lac repressor inferred from its homology with cro repressor
-
B.W. Matthews, D.H. Ohlendorf, W.F. Anderson, and Y. Takeda Structure of the DNA-binding region of lac repressor inferred from its homology with cro repressor Proc. Natl. Acad. Sci. USA 79 1982 1428 1432
-
(1982)
Proc. Natl. Acad. Sci. USA
, vol.79
, pp. 1428-1432
-
-
Matthews, B.W.1
Ohlendorf, D.H.2
Anderson, W.F.3
Takeda, Y.4
-
14
-
-
0023057529
-
Sigma factors from E. coli, B. subtilis, phage SP01, and phage T4 are homologous proteins
-
M. Gribskov, and R.R. Burgess Sigma factors from E. coli, B. subtilis, phage SP01, and phage T4 are homologous proteins Nucl. Acids Res. 14 1986 6745 6763
-
(1986)
Nucl. Acids Res.
, vol.14
, pp. 6745-6763
-
-
Gribskov, M.1
Burgess, R.R.2
-
15
-
-
0344867693
-
Heat shock regulatory gene (htpR) of Escherichia coli is required for growth at high temperature but is dispensable at low temperature
-
T. Yura, T. Tobe, K. Ito, and T. Osawa Heat shock regulatory gene (htpR) of Escherichia coli is required for growth at high temperature but is dispensable at low temperature Proc. Natl. Acad. Sci. USA 81 1984 6803 6807
-
(1984)
Proc. Natl. Acad. Sci. USA
, vol.81
, pp. 6803-6807
-
-
Yura, T.1
Tobe, T.2
Ito, K.3
Osawa, T.4
-
16
-
-
0021719522
-
Nucleotide sequence of the heat shock regulatory gene of E. coli suggests its protein product may be a transcription factor
-
R. Landick, V. Vaughn, E.T. Lau, R.A. VanBogelen, J.W. Erickson, and F.C. Neidhardt Nucleotide sequence of the heat shock regulatory gene of E. coli suggests its protein product may be a transcription factor Cell 38 1984 175 182
-
(1984)
Cell
, vol.38
, pp. 175-182
-
-
Landick, R.1
Vaughn, V.2
Lau, E.T.3
Vanbogelen, R.A.4
Erickson, J.W.5
Neidhardt, F.C.6
-
18
-
-
0024293501
-
Secondary structure determination for the Antennapedia homeodomain by nuclear magnetic resonance and evidence for a helix-turn-helix motif
-
G. Otting, Y.Q. Qian, M. Muller, M. Affolter, W. Gehring, and K. Wuthrich Secondary structure determination for the Antennapedia homeodomain by nuclear magnetic resonance and evidence for a helix-turn-helix motif EMBO J. 7 1988 4305 4309
-
(1988)
EMBO J.
, vol.7
, pp. 4305-4309
-
-
Otting, G.1
Qian, Y.Q.2
Muller, M.3
Affolter, M.4
Gehring, W.5
Wuthrich, K.6
-
19
-
-
0024571640
-
The helix-turn-helix DNA binding motif
-
R.G. Brennan, and B.W. Matthews The helix-turn-helix DNA binding motif J. Biol. Chem. 264 1989 1903 1906
-
(1989)
J. Biol. Chem.
, vol.264
, pp. 1903-1906
-
-
Brennan, R.G.1
Matthews, B.W.2
-
20
-
-
0024999332
-
Improved detection of helix-turn-helix DNA-binding motifs in protein sequences
-
I.B. Dodd, and J.B. Egan Improved detection of helix-turn-helix DNA-binding motifs in protein sequences Nucl. Acids Res. 18 1990 5019 5026
-
(1990)
Nucl. Acids Res.
, vol.18
, pp. 5019-5026
-
-
Dodd, I.B.1
Egan, J.B.2
-
21
-
-
0023644680
-
Systematic method for the detection of potential lambda Cro-like DNA-binding regions in proteins
-
I.B. Dodd, and J.B. Egan Systematic method for the detection of potential lambda Cro-like DNA-binding regions in proteins J. Mol. Biol. 194 1987 557 564
-
(1987)
J. Mol. Biol.
, vol.194
, pp. 557-564
-
-
Dodd, I.B.1
Egan, J.B.2
-
22
-
-
0025914242
-
Crystal structure of a CAP-DNA complex: The DNA is bent by 90°
-
S.C. Schultz, G.C. Shields, and T.A. Steitz Crystal structure of a CAP-DNA complex: the DNA is bent by 90° Science 253 1991 1001 1007
-
(1991)
Science
, vol.253
, pp. 1001-1007
-
-
Schultz, S.C.1
Shields, G.C.2
Steitz, T.A.3
-
23
-
-
0026666377
-
Escherichia coli biotin holoenzyme synthetase/bio repressor crystal structure delineates the biotin- and DNA-binding domains
-
K.P. Wilson, L.M. Shewchuk, R.G. Brennan, A.J. Otsuka, and B.W. Matthews Escherichia coli biotin holoenzyme synthetase/bio repressor crystal structure delineates the biotin- and DNA-binding domains Proc. Natl. Acad. Sci. USA 89 1992 9257 9261
-
(1992)
Proc. Natl. Acad. Sci. USA
, vol.89
, pp. 9257-9261
-
-
Wilson, K.P.1
Shewchuk, L.M.2
Brennan, R.G.3
Otsuka, A.J.4
Matthews, B.W.5
-
24
-
-
0027275485
-
The winged-helix DNA-binding motif: Another helix-turn-helix takeoff
-
R.G. Brennan The winged-helix DNA-binding motif: another helix-turn-helix takeoff Cell 74 1993 773 776
-
(1993)
Cell
, vol.74
, pp. 773-776
-
-
Brennan, R.G.1
-
25
-
-
0027270989
-
Co-crystal structure of the HNF-3/fork head DNA-recognition motif resembles histone H5
-
K.L. Clark, E.D. Halay, E. Lai, and S.K. Burley Co-crystal structure of the HNF-3/fork head DNA-recognition motif resembles histone H5 Nature 364 1993 412 420
-
(1993)
Nature
, vol.364
, pp. 412-420
-
-
Clark, K.L.1
Halay, E.D.2
Lai, E.3
Burley, S.K.4
-
26
-
-
0027402969
-
Crystal structure of globular domain of histone H5 and its implications for nucleosome binding
-
V. Ramakrishnan, J.T. Finch, V. Graziano, P.L. Lee, and R.M. Sweet Crystal structure of globular domain of histone H5 and its implications for nucleosome binding Nature 362 1993 219 223
-
(1993)
Nature
, vol.362
, pp. 219-223
-
-
Ramakrishnan, V.1
Finch, J.T.2
Graziano, V.3
Lee, P.L.4
Sweet, R.M.5
-
27
-
-
0029352111
-
Identification of a common fold in the replication terminator protein suggests a possible mode for DNA binding
-
M.B. Swindells Identification of a common fold in the replication terminator protein suggests a possible mode for DNA binding Trends Biochem. Sci. 20 1995 300 302
-
(1995)
Trends Biochem. Sci.
, vol.20
, pp. 300-302
-
-
Swindells, M.B.1
-
28
-
-
0029670530
-
A new pattern for helix-turn-helix recognition revealed by the PU.1 ETS-domain-DNA complex
-
R. Kodandapani, F. Pio, C.Z. Ni, G. Piccialli, M. Klemsz, S. McKercher, R.A. Maki, and K.R. Ely A new pattern for helix-turn-helix recognition revealed by the PU.1 ETS-domain-DNA complex Nature 380 1996 456 460
-
(1996)
Nature
, vol.380
, pp. 456-460
-
-
Kodandapani, R.1
Pio, F.2
Ni, C.Z.3
Piccialli, G.4
Klemsz, M.5
McKercher, S.6
Maki, R.A.7
Ely, K.R.8
-
30
-
-
0033485460
-
DNA-binding proteins and evolution of transcription regulation in the archaea
-
L. Aravind, and E.V. Koonin DNA-binding proteins and evolution of transcription regulation in the archaea Nucl. Acids Res. 27 1999 4658 4670
-
(1999)
Nucl. Acids Res.
, vol.27
, pp. 4658-4670
-
-
Aravind, L.1
Koonin, E.V.2
-
31
-
-
0035067057
-
Mechanism and regulation of transcription in archaea
-
S.D. Bell, and S.P. Jackson Mechanism and regulation of transcription in archaea Curr. Opin. Microbiol. 4 2001 208 213
-
(2001)
Curr. Opin. Microbiol.
, vol.4
, pp. 208-213
-
-
Bell, S.D.1
Jackson, S.P.2
-
32
-
-
0032766490
-
Comparative genomics of the Archaea (Euryarchaeota): Evolution of conserved protein families, the stable core, and the variable shell
-
K.S. Makarova, L. Aravind, M.Y. Galperin, N.V. Grishin, R.L. Tatusov, Y.I. Wolf, and E.V. Koonin Comparative genomics of the Archaea (Euryarchaeota): evolution of conserved protein families, the stable core, and the variable shell Genome Res. 9 1999 608 628
-
(1999)
Genome Res.
, vol.9
, pp. 608-628
-
-
Makarova, K.S.1
Aravind, L.2
Galperin, M.Y.3
Grishin, N.V.4
Tatusov, R.L.5
Wolf, Y.I.6
Koonin, E.V.7
-
33
-
-
0032102006
-
Transcription and translation in Archaea: A mosaic of eukaryal and bacterial features
-
S.D. Bell, and S.P. Jackson Transcription and translation in Archaea: a mosaic of eukaryal and bacterial features Trends Microbiol. 6 1998 222 228
-
(1998)
Trends Microbiol.
, vol.6
, pp. 222-228
-
-
Bell, S.D.1
Jackson, S.P.2
-
35
-
-
0029559311
-
Sequence similarity analysis of Escherichia coli proteins: Functional and evolutionary implications
-
E.V. Koonin, R.L. Tatusov, and K.E. Rudd Sequence similarity analysis of Escherichia coli proteins: functional and evolutionary implications Proc. Natl. Acad. Sci. USA 92 1995 11921 11925
-
(1995)
Proc. Natl. Acad. Sci. USA
, vol.92
, pp. 11921-11925
-
-
Koonin, E.V.1
Tatusov, R.L.2
Rudd, K.E.3
-
36
-
-
0344153756
-
Phylogeny of the bacterial superfamily of Crp-Fnr transcription regulators: Exploiting the metabolic spectrum by controlling alternative gene programs
-
H. Korner, H.J. Sofia, and W.G. Zumft Phylogeny of the bacterial superfamily of Crp-Fnr transcription regulators: exploiting the metabolic spectrum by controlling alternative gene programs FEMS Microbiol. Rev. 27 2003 559 592
-
(2003)
FEMS Microbiol. Rev.
, vol.27
, pp. 559-592
-
-
Korner, H.1
Sofia, H.J.2
Zumft, W.G.3
-
38
-
-
0037066712
-
Subdivision of the helix-turn-helix GntR family of bacterial regulators in the FadR, HutC, MocR, and YtrA subfamilies
-
S.b. Rigali, A. Derouaux, F. Giannotta, and J. Dusart Subdivision of the helix-turn-helix GntR family of bacterial regulators in the FadR, HutC, MocR, and YtrA subfamilies J. Biol. Chem. 277 2002 12507 12515
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 12507-12515
-
-
Rigali, S.B.1
Derouaux, A.2
Giannotta, F.3
Dusart, J.4
-
39
-
-
0031452318
-
Arac/XylS family of transcriptional regulators
-
M.T. Gallegos, R. Schleif, A. Bairoch, K. Hofmann, and J.L. Ramos Arac/XylS family of transcriptional regulators Microbiol. Mol. Biol. Rev. 61 1997 393 410
-
(1997)
Microbiol. Mol. Biol. Rev.
, vol.61
, pp. 393-410
-
-
Gallegos, M.T.1
Schleif, R.2
Bairoch, A.3
Hofmann, K.4
Ramos, J.L.5
-
40
-
-
0026724966
-
A family of bacterial regulators homologous to Gal and Lac repressors
-
M.J. Weickert, and S. Adhya A family of bacterial regulators homologous to Gal and Lac repressors J. Biol. Chem. 267 1992 15869 15874
-
(1992)
J. Biol. Chem.
, vol.267
, pp. 15869-15874
-
-
Weickert, M.J.1
Adhya, S.2
-
42
-
-
2942606066
-
Structure and evolution of transcriptional regulatory networks
-
M.M. Babu, N.M. Luscombe, L. Aravind, M. Gerstein, and S.A. Teichmann Structure and evolution of transcriptional regulatory networks Curr. Opin. Struct. Biol. 14 2004 283 291
-
(2004)
Curr. Opin. Struct. Biol.
, vol.14
, pp. 283-291
-
-
Babu, M.M.1
Luscombe, N.M.2
Aravind, L.3
Gerstein, M.4
Teichmann, S.A.5
-
43
-
-
2442537233
-
Gene regulatory network growth by duplication
-
S.A. Teichmann, and M.M. Babu Gene regulatory network growth by duplication Nat. Genet. 36 2004 492 496
-
(2004)
Nat. Genet.
, vol.36
, pp. 492-496
-
-
Teichmann, S.A.1
Babu, M.M.2
-
44
-
-
0036682596
-
Crystal structure of an mRNA-binding fragment of Moorella thermoacetica elongation factor SelB
-
M. Selmer, and X.-D. Su Crystal structure of an mRNA-binding fragment of Moorella thermoacetica elongation factor SelB EMBO J. 21 2002 4145 4153
-
(2002)
EMBO J.
, vol.21
, pp. 4145-4153
-
-
Selmer, M.1
Su, X.-D.2
-
45
-
-
0030790696
-
Structure of the multimodular endonuclease FokI bound to DNA
-
D.A. Wah, J.A. Hirsch, L.F. Dorner, I. Schildkraut, and A.K. Aggarwal Structure of the multimodular endonuclease FokI bound to DNA Nature 388 1997 97 100
-
(1997)
Nature
, vol.388
, pp. 97-100
-
-
Wah, D.A.1
Hirsch, J.A.2
Dorner, L.F.3
Schildkraut, I.4
Aggarwal, A.K.5
-
46
-
-
0028354364
-
Crystal structure of a suicidal DNA repair protein: The Ada O6-methylguanine-DNA methyltransferase from E. coli
-
M.H. Moore, J.M. Gulbis, E.J. Dodson, B. Demple, and P.C. Moody Crystal structure of a suicidal DNA repair protein: the Ada O6-methylguanine-DNA methyltransferase from E. coli EMBO J. 13 1994 1495 1501
-
(1994)
EMBO J.
, vol.13
, pp. 1495-1501
-
-
Moore, M.H.1
Gulbis, J.M.2
Dodson, E.J.3
Demple, B.4
Moody, P.C.5
-
47
-
-
1842577742
-
Structural analysis of cooperative RNA binding by the la motif and central RRM domain of human la protein
-
C. Alfano, D. Sanfelice, J. Babon, G. Kelly, A. Jacks, S. Curry, and M.R. Conte Structural analysis of cooperative RNA binding by the La motif and central RRM domain of human La protein Nat. Struct. Mol. Biol. 11 2004 323 329
-
(2004)
Nat. Struct. Mol. Biol.
, vol.11
, pp. 323-329
-
-
Alfano, C.1
Sanfelice, D.2
Babon, J.3
Kelly, G.4
Jacks, A.5
Curry, S.6
Conte, M.R.7
-
48
-
-
1842419667
-
Structure of the la motif: A winged helix domain mediates RNA binding via a conserved aromatic patch
-
G. Dong, G. Chakshusmathi, S.L. Wolin, and K.M. Reinisch Structure of the La motif: a winged helix domain mediates RNA binding via a conserved aromatic patch EMBO J. 23 2004 1000 1007
-
(2004)
EMBO J.
, vol.23
, pp. 1000-1007
-
-
Dong, G.1
Chakshusmathi, G.2
Wolin, S.L.3
Reinisch, K.M.4
-
49
-
-
0033669627
-
Structural basis of the recognition of the dishevelled DEP domain in the Wnt signaling pathway
-
H.C. Wong, J. Mao, J.T. Nguyen, S. Srinivas, W. Zhang, B. Liu, L. Li, D. Wu, and J. Zheng Structural basis of the recognition of the dishevelled DEP domain in the Wnt signaling pathway Nat. Struct. Biol. 7 2000 1178 1184
-
(2000)
Nat. Struct. Biol.
, vol.7
, pp. 1178-1184
-
-
Wong, H.C.1
Mao, J.2
Nguyen, J.T.3
Srinivas, S.4
Zhang, W.5
Liu, B.6
Li, L.7
Wu, D.8
Zheng, J.9
-
50
-
-
18344391432
-
Structure of the Cul1-Rbx1-Skp1-F boxSkp2 SCF ubiquitin ligase complex
-
N. Zheng, B.A. Schulman, L. Song, J.J. Miller, P.D. Jeffrey, P. Wang, C. Chu, D.M. Koepp, S.J. Elledge, M. Pagano, R.C. Conaway, J.W. Conaway, J.W. Harper, and N.P. Pavletich Structure of the Cul1-Rbx1-Skp1-F boxSkp2 SCF ubiquitin ligase complex Nature 416 2002 703 709
-
(2002)
Nature
, vol.416
, pp. 703-709
-
-
Zheng, N.1
Schulman, B.A.2
Song, L.3
Miller, J.J.4
Jeffrey, P.D.5
Wang, P.6
Chu, C.7
Koepp, D.M.8
Elledge, S.J.9
Pagano, M.10
Conaway, R.C.11
Conaway, J.W.12
Harper, J.W.13
Pavletich, N.P.14
-
51
-
-
0030886293
-
Structure of Cre recombinase complexed with DNA in a site-specific recombination synapse
-
F. Guo, D.N. Gopaul, and G.D. van Duyne Structure of Cre recombinase complexed with DNA in a site-specific recombination synapse Nature 389 1997 40 46
-
(1997)
Nature
, vol.389
, pp. 40-46
-
-
Guo, F.1
Gopaul, D.N.2
Van Duyne, G.D.3
-
52
-
-
0024997404
-
Protein-DNA contacts in the structure of a homeodomain-DNA complex determined by nuclear magnetic resonance spectroscopy in solution
-
G. Otting, Y.Q. Qian, M. Billeter, M. Muller, M. Affolter, W.J. Gehring, and K. Wuthrich Protein-DNA contacts in the structure of a homeodomain-DNA complex determined by nuclear magnetic resonance spectroscopy in solution EMBO J. 9 1990 3085 3092
-
(1990)
EMBO J.
, vol.9
, pp. 3085-3092
-
-
Otting, G.1
Qian, Y.Q.2
Billeter, M.3
Muller, M.4
Affolter, M.5
Gehring, W.J.6
Wuthrich, K.7
-
53
-
-
0030986376
-
Solution structure of the N-terminal zinc binding domain of HIV-1 integrase
-
M. Cai, R. Zheng, M. Caffrey, R. Craigie, G.M. Clore, and A.M. Gronenborn Solution structure of the N-terminal zinc binding domain of HIV-1 integrase Nat. Struct. Biol. 4 1997 567 577
-
(1997)
Nat. Struct. Biol.
, vol.4
, pp. 567-577
-
-
Cai, M.1
Zheng, R.2
Caffrey, M.3
Craigie, R.4
Clore, G.M.5
Gronenborn, A.M.6
-
54
-
-
0034612226
-
Zinc-bundle structure of the essential RNA polymerase subunit RPB10 from Methanobacterium thermoautotrophicum
-
C.D. Mackereth, C.H. Arrowsmith, A.M. Edwards, and L.P. McIntosh Zinc-bundle structure of the essential RNA polymerase subunit RPB10 from Methanobacterium thermoautotrophicum Proc. Natl. Acad. Sci. USA 97 2000 6316 6321
-
(2000)
Proc. Natl. Acad. Sci. USA
, vol.97
, pp. 6316-6321
-
-
MacKereth, C.D.1
Arrowsmith, C.H.2
Edwards, A.M.3
McIntosh, L.P.4
-
55
-
-
0033229821
-
Solution structure of the DNA binding domain from Dead ringer, a sequence-specific AT-rich interaction domain (ARID)
-
J. Iwahara, and R.T. Clubb Solution structure of the DNA binding domain from Dead ringer, a sequence-specific AT-rich interaction domain (ARID) EMBO J. 18 1999 6084 6094
-
(1999)
EMBO J.
, vol.18
, pp. 6084-6094
-
-
Iwahara, J.1
Clubb, R.T.2
-
56
-
-
0036053872
-
DNA complexed structure of the key transcription factor initiating development in sporulating bacteria
-
H. Zhao, T. Msadek, J. Zapf, Madhusudan, J.A. Hoch, and K.I. Varughese DNA complexed structure of the key transcription factor initiating development in sporulating bacteria Structure (Camb) 10 2002 1041 1050
-
(2002)
Structure (Camb)
, vol.10
, pp. 1041-1050
-
-
Zhao, H.1
Msadek, T.2
Zapf, J.3
Madhusudan4
Hoch, J.A.5
Varughese, K.I.6
-
57
-
-
3042642002
-
Sequence-specific DNA binding determined by contacts outside the helix-turn-helix motif of the ParB homolog KorB
-
D. Khare, G.n. Ziegelin, E. Lanka, and U. Heinemann Sequence-specific DNA binding determined by contacts outside the helix-turn-helix motif of the ParB homolog KorB Nat. Struct. Mol. Biol. 11 2004 656 663
-
(2004)
Nat. Struct. Mol. Biol.
, vol.11
, pp. 656-663
-
-
Khare, D.1
Ziegelin, G.N.2
Lanka, E.3
Heinemann, U.4
-
58
-
-
0035136267
-
Crystal structure of the global regulator FlhD from Escherichia coli at 1.8 Å resolution
-
A. Campos, R.G. Zhang, R.W. Alkire, P. Matsumura, and E.M. Westbrook Crystal structure of the global regulator FlhD from Escherichia coli at 1.8 Å resolution Mol. Microbiol. 39 2001 567 580
-
(2001)
Mol. Microbiol.
, vol.39
, pp. 567-580
-
-
Campos, A.1
Zhang, R.G.2
Alkire, R.W.3
Matsumura, P.4
Westbrook, E.M.5
-
59
-
-
0345690206
-
Structural basis of core promoter recognition in a primitive eukaryote
-
M.A. Schumacher, A.O.T. Lau, and P.J. Johnson Structural basis of core promoter recognition in a primitive eukaryote Cell 115 2003 413 424
-
(2003)
Cell
, vol.115
, pp. 413-424
-
-
Schumacher, M.A.1
Lau, A.O.T.2
Johnson, P.J.3
-
60
-
-
0032515029
-
Structure of human methionine aminopeptidase-2 complexed with fumagillin
-
S. Liu, J. Widom, C.W. Kemp, C.M. Crews, and J. Clardy Structure of human methionine aminopeptidase-2 complexed with fumagillin Science 282 1998 1324 1327
-
(1998)
Science
, vol.282
, pp. 1324-1327
-
-
Liu, S.1
Widom, J.2
Kemp, C.W.3
Crews, C.M.4
Clardy, J.5
-
61
-
-
0039985836
-
The structure of plasmid-encoded transcriptional repressor CopG unliganded and bound to its operator
-
F.X. Gomis-Rueth, M. Solãá, P. Acebo, A. Pãrraga, A. Guasch, R. Eritja, A. Gonzalez, M. Espinosa, G. del Solar, and M. Coll The structure of plasmid-encoded transcriptional repressor CopG unliganded and bound to its operator EMBO J. 17 1998 7404 7415
-
(1998)
EMBO J.
, vol.17
, pp. 7404-7415
-
-
Gomis-Rueth, F.X.1
Solãá, M.2
Acebo, P.3
Pãrraga, A.4
Guasch, A.5
Eritja, R.6
Gonzalez, A.7
Espinosa, M.8
Del Solar, G.9
Coll, M.10
-
63
-
-
0034209828
-
Two tricks in one bundle: Helix-turn-helix gains enzymatic activity
-
N.V. Grishin Two tricks in one bundle: helix-turn-helix gains enzymatic activity Nucl. Acids Res. 28 2000 2229 2233
-
(2000)
Nucl. Acids Res.
, vol.28
, pp. 2229-2233
-
-
Grishin, N.V.1
-
65
-
-
0030465532
-
Crystal structure of the protein serine/threonine phosphatase 2C at 2.0 Å resolution
-
A.K. Das, N.R. Helps, P.T. Cohen, and D. Barford Crystal structure of the protein serine/threonine phosphatase 2C at 2.0 Å resolution EMBO J. 15 1996 6798 6809
-
(1996)
EMBO J.
, vol.15
, pp. 6798-6809
-
-
Das, A.K.1
Helps, N.R.2
Cohen, P.T.3
Barford, D.4
-
67
-
-
1642447720
-
Histone H1 and the origin of protamines
-
J.D. Lewis, N.R. Saperas, Y. Song, M.J. Zamora, M. Chiva, and J. Ausió Histone H1 and the origin of protamines Proc. Natl. Acad. Sci. USA 101 2004 4148 4152
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 4148-4152
-
-
Lewis, J.D.1
Saperas, N.R.2
Song, Y.3
Zamora, M.J.4
Chiva, M.5
Ausió, J.6
-
68
-
-
2942604292
-
The last gene of the fla/che operon in Bacillus subtilis, ylxL, is required for maximal sigmaD function
-
H. Werhane, P. Lopez, M. Mendel, M. Zimmer, G.W. Ordal, and L.M. Márquez-Magaña The last gene of the fla/che operon in Bacillus subtilis, ylxL, is required for maximal sigmaD function J. Bacteriol. 186 2004 4025 4029
-
(2004)
J. Bacteriol.
, vol.186
, pp. 4025-4029
-
-
Werhane, H.1
Lopez, P.2
Mendel, M.3
Zimmer, M.4
Ordal, G.W.5
Márquez- Magaña, L.M.6
-
69
-
-
1942468855
-
Genes governing swarming in Bacillus subtilis and evidence for a phase variation mechanism controlling surface motility
-
D.B. Kearns, F. Chu, R. Rudner, and R. Losick Genes governing swarming in Bacillus subtilis and evidence for a phase variation mechanism controlling surface motility Mol. Microbiol. 52 2004 357 369
-
(2004)
Mol. Microbiol.
, vol.52
, pp. 357-369
-
-
Kearns, D.B.1
Chu, F.2
Rudner, R.3
Losick, R.4
-
70
-
-
0036203066
-
Structure of the bacterial RNA polymerase promoter specificity sigma subunit
-
E.A. Campbell, O. Muzzin, M. Chlenov, J.L. Sun, C.A. Olson, O. Weinman, M.L. Trester-Zedlitz, and S.A. Darst Structure of the bacterial RNA polymerase promoter specificity sigma subunit Mol. Cell. 9 2002 527 539
-
(2002)
Mol. Cell.
, vol.9
, pp. 527-539
-
-
Campbell, E.A.1
Muzzin, O.2
Chlenov, M.3
Sun, J.L.4
Olson, C.A.5
Weinman, O.6
Trester-Zedlitz, M.L.7
Darst, S.A.8
-
71
-
-
85047671736
-
The SANT domain: A putative DNA-binding domain in the SWI-SNF and ADA complexes, the transcriptional co-repressor N-CoR and TFIIIB
-
R. Aasland, A.F. Stewart, and T. Gibson The SANT domain: a putative DNA-binding domain in the SWI-SNF and ADA complexes, the transcriptional co-repressor N-CoR and TFIIIB Trends Biochem. Sci. 21 1996 87 88
-
(1996)
Trends Biochem. Sci.
, vol.21
, pp. 87-88
-
-
Aasland, R.1
Stewart, A.F.2
Gibson, T.3
-
72
-
-
18544372595
-
BRCA2 function in DNA binding and recombination from a BRCA2-DSS1-ssDNA structure
-
H. Yang, P.D. Jeffrey, J. Miller, E. Kinnucan, Y. Sun, N.H. Thoma, N. Zheng, P.-L. Chen, W.-H. Lee, and N.P. Pavletich BRCA2 function in DNA binding and recombination from a BRCA2-DSS1-ssDNA structure Science 297 2002 1837 1848
-
(2002)
Science
, vol.297
, pp. 1837-1848
-
-
Yang, H.1
Jeffrey, P.D.2
Miller, J.3
Kinnucan, E.4
Sun, Y.5
Thoma, N.H.6
Zheng, N.7
Chen, P.-L.8
Lee, W.-H.9
Pavletich, N.P.10
-
73
-
-
5144223072
-
Comparative genomics of the FtsK-HerA superfamily of pumping ATPases: Implications for the origins of chromosome segregation, cell division and viral capsid packaging
-
L.M. Iyer, K.S. Makarova, E.V. Koonin, and L. Aravind Comparative genomics of the FtsK-HerA superfamily of pumping ATPases: implications for the origins of chromosome segregation, cell division and viral capsid packaging Nucl. Acids Res. 32 2004 5260 5279
-
(2004)
Nucl. Acids Res.
, vol.32
, pp. 5260-5279
-
-
Iyer, L.M.1
Makarova, K.S.2
Koonin, E.V.3
Aravind, L.4
-
74
-
-
0037169328
-
FtsK Is a DNA motor protein that activates chromosome dimer resolution by switching the catalytic state of the XerC and XerD recombinases
-
L. Aussel, F.X. Barre, M. Aroyo, A. Stasiak, A.Z. Stasiak, and D. Sherratt FtsK Is a DNA motor protein that activates chromosome dimer resolution by switching the catalytic state of the XerC and XerD recombinases Cell 108 2002 195 205
-
(2002)
Cell
, vol.108
, pp. 195-205
-
-
Aussel, L.1
Barre, F.X.2
Aroyo, M.3
Stasiak, A.4
Stasiak, A.Z.5
Sherratt, D.6
-
75
-
-
4344661025
-
Twenty years of the pPS10 replicon: Insights on the molecular mechanism for the activation of DNA replication in iteron-containing bacterial plasmids
-
R. Giraldo, and M.E. FernÃá ndez-Tresguerres Twenty years of the pPS10 replicon: insights on the molecular mechanism for the activation of DNA replication in iteron-containing bacterial plasmids Plasmid 52 2004 69 83
-
(2004)
Plasmid
, vol.52
, pp. 69-83
-
-
Giraldo, R.1
Fernãá Ndez-Tresguerres, M.E.2
-
76
-
-
0142125292
-
Transformation of Streptococcus pneumoniae relies on DprA- and RecA-dependent protection of incoming DNA single strands
-
M. Berge, I. Mortier-Barriére, B. Martin, and J.-P. Claverys Transformation of Streptococcus pneumoniae relies on DprA- and RecA-dependent protection of incoming DNA single strands Mol. Microbiol. 50 2003 527 536
-
(2003)
Mol. Microbiol.
, vol.50
, pp. 527-536
-
-
Berge, M.1
Mortier-Barriére, I.2
Martin, B.3
Claverys, J.-P.4
-
77
-
-
0031010740
-
A helix-turn-helix DNA-binding motif predicted for transposases of DNA transposons
-
S. Pietrokovski, and S. Henikoff A helix-turn-helix DNA-binding motif predicted for transposases of DNA transposons Mol. Gen. Genet. 254 1997 689 695
-
(1997)
Mol. Gen. Genet.
, vol.254
, pp. 689-695
-
-
Pietrokovski, S.1
Henikoff, S.2
-
78
-
-
0037085294
-
The domain organization and properties of individual domains of DNA topoisomerase V, a type 1B topoisomerase with DNA repair activities
-
G.I. Belova, R. Prasad, I.V. Nazimov, S.H. Wilson, and A.I. Slesarev The domain organization and properties of individual domains of DNA topoisomerase V, a type 1B topoisomerase with DNA repair activities J. Biol. Chem. 277 2002 4959 4965
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 4959-4965
-
-
Belova, G.I.1
Prasad, R.2
Nazimov, I.V.3
Wilson, S.H.4
Slesarev, A.I.5
-
79
-
-
0026688006
-
VacB, a novel chromosomal gene required for expression of virulence genes on the large plasmid of Shigella flexneri
-
T. Tobe, C. Sasakawa, N. Okada, Y. Honma, and M. Yoshikawa vacB, a novel chromosomal gene required for expression of virulence genes on the large plasmid of Shigella flexneri J. Bacteriol. 174 1992 6359 6367
-
(1992)
J. Bacteriol.
, vol.174
, pp. 6359-6367
-
-
Tobe, T.1
Sasakawa, C.2
Okada, N.3
Honma, Y.4
Yoshikawa, M.5
-
80
-
-
0036231380
-
Yeast Rio1p is the founding member of a novel subfamily of protein serine kinases involved in the control of cell cycle progression
-
M. Angermayr, A. Roidl, and W. Bandlow Yeast Rio1p is the founding member of a novel subfamily of protein serine kinases involved in the control of cell cycle progression Mol. Microbiol. 44 2002 309 324
-
(2002)
Mol. Microbiol.
, vol.44
, pp. 309-324
-
-
Angermayr, M.1
Roidl, A.2
Bandlow, W.3
-
81
-
-
4444348265
-
Crystal structure of A. fulgidus Rio2 defines a new family of serine protein kinases
-
N. LaRonde-LeBlanc, and A. Wlodawer Crystal structure of A. fulgidus Rio2 defines a new family of serine protein kinases Structure (Cambridge) 12 2004 1585 1594
-
(2004)
Structure (Cambridge)
, vol.12
, pp. 1585-1594
-
-
Laronde-Leblanc, N.1
Wlodawer, A.2
-
82
-
-
0029867923
-
Structure of the UmuD′ protein and its regulation in response to DNA damage
-
T.S. Peat, E.G. Frank, J.P. McDonald, A.S. Levine, R. Woodgate, and W.A. Hendrickson Structure of the UmuD′ protein and its regulation in response to DNA damage Nature 380 1996 727 730
-
(1996)
Nature
, vol.380
, pp. 727-730
-
-
Peat, T.S.1
Frank, E.G.2
McDonald, J.P.3
Levine, A.S.4
Woodgate, R.5
Hendrickson, W.A.6
-
83
-
-
0142062025
-
Heat and DNA damage induction of the LexA-like regulator HdiR from Lactococcus lactis is mediated by RecA and ClpP
-
K. Savijoki, H. Ingmer, D. Frees, F.K. Vogensen, A. Palva, and P. Varmanen Heat and DNA damage induction of the LexA-like regulator HdiR from Lactococcus lactis is mediated by RecA and ClpP Mol. Microbiol. 50 2003 609 621
-
(2003)
Mol. Microbiol.
, vol.50
, pp. 609-621
-
-
Savijoki, K.1
Ingmer, H.2
Frees, D.3
Vogensen, F.K.4
Palva, A.5
Varmanen, P.6
-
84
-
-
0036039734
-
Mechanochemical ATPases and transcriptional activation
-
X. Zhang, M. Chaney, S.R. Wigneshweraraj, J. Schumacher, P. Bordes, W. Cannon, and M. Buck Mechanochemical ATPases and transcriptional activation Mol. Microbiol. 45 2002 895 903
-
(2002)
Mol. Microbiol.
, vol.45
, pp. 895-903
-
-
Zhang, X.1
Chaney, M.2
Wigneshweraraj, S.R.3
Schumacher, J.4
Bordes, P.5
Cannon, W.6
Buck, M.7
-
85
-
-
4644247731
-
STAND, a class of P-loop NTPases including animal and plant regulators of programmed cell death: Multiple, complex domain architectures, unusual phyletic patterns, and evolution by horizontal gene transfer
-
D.D. Leipe, E.V. Koonin, and L. Aravind STAND, a class of P-loop NTPases including animal and plant regulators of programmed cell death: multiple, complex domain architectures, unusual phyletic patterns, and evolution by horizontal gene transfer J. Mol. Biol. 343 2004 1 28
-
(2004)
J. Mol. Biol.
, vol.343
, pp. 1-28
-
-
Leipe, D.D.1
Koonin, E.V.2
Aravind, L.3
-
86
-
-
0035103512
-
Solution structure of the DNA-binding domain of the TyrR protein of Haemophilus influenzae
-
Y. Wang, S. Zhao, R.L. Somerville, and O. Jardetzky Solution structure of the DNA-binding domain of the TyrR protein of Haemophilus influenzae Protein Sci. 10 2001 592 598
-
(2001)
Protein Sci.
, vol.10
, pp. 592-598
-
-
Wang, Y.1
Zhao, S.2
Somerville, R.L.3
Jardetzky, O.4
-
87
-
-
6344242971
-
Oligomeric assemblies of the Escherichia coli MalT transcriptional activator revealed by cryo-electron microscopy and image processing
-
E. Larquet, V.r. Schreiber, N. Boisset, and E. Richet Oligomeric assemblies of the Escherichia coli MalT transcriptional activator revealed by cryo-electron microscopy and image processing J. Mol. Biol. 343 2004 1159 1169
-
(2004)
J. Mol. Biol.
, vol.343
, pp. 1159-1169
-
-
Larquet, E.1
Schreiber, V.R.2
Boisset, N.3
Richet, E.4
-
88
-
-
0035839553
-
Roles of glucitol in the GutR-mediated transcription activation process in Bacillus subtilis: Glucitol induces GutR to change its conformation and to bind ATP
-
K.K. Poon, J.C. Chu, and S.L. Wong Roles of glucitol in the GutR-mediated transcription activation process in Bacillus subtilis: glucitol induces GutR to change its conformation and to bind ATP J. Biol. Chem. 276 2001 29819 29825
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 29819-29825
-
-
Poon, K.K.1
Chu, J.C.2
Wong, S.L.3
-
89
-
-
0036268103
-
AfsS is a target of AfsR, a transcriptional factor with ATPase activity that globally controls secondary metabolism in Streptomyces coelicolor A(32)
-
P.-C. Lee, T. Umeyama, and S. Horinouchi afsS is a target of AfsR, a transcriptional factor with ATPase activity that globally controls secondary metabolism in Streptomyces coelicolor A(32) Mol. Microbiol. 43 2002 1413 1430
-
(2002)
Mol. Microbiol.
, vol.43
, pp. 1413-1430
-
-
Lee, P.-C.1
Umeyama, T.2
Horinouchi, S.3
-
90
-
-
0028955458
-
Response regulators of bacterial signal transduction systems: Selective domain shuffling during evolution
-
G.M. Pao, and M.H. Saier Response regulators of bacterial signal transduction systems: selective domain shuffling during evolution J. Mol. Evol. 40 1995 136 154
-
(1995)
J. Mol. Evol.
, vol.40
, pp. 136-154
-
-
Pao, G.M.1
Saier, M.H.2
-
91
-
-
0035369115
-
Histidine kinases and response regulator proteins in two-component signaling systems
-
A.H. West, and A.M. Stock Histidine kinases and response regulator proteins in two-component signaling systems Trends Biochem. Sci. 26 2001 369 376
-
(2001)
Trends Biochem. Sci.
, vol.26
, pp. 369-376
-
-
West, A.H.1
Stock, A.M.2
-
92
-
-
0031774448
-
Coupling physiology and gene regulation in bacteria: The phosphotransferase sugar uptake system delivers the signals
-
J. Stulke, and W. Hillen Coupling physiology and gene regulation in bacteria: the phosphotransferase sugar uptake system delivers the signals Naturwissenschaften 85 1998 583 592
-
(1998)
Naturwissenschaften
, vol.85
, pp. 583-592
-
-
Stulke, J.1
Hillen, W.2
-
93
-
-
0031808469
-
PRD-a protein domain involved in PTS-dependent induction and carbon catabolite repression of catabolic operons in bacteria
-
J. Stulke, M. Arnaud, G. Rapoport, and I. Martin-Verstraete PRD-a protein domain involved in PTS-dependent induction and carbon catabolite repression of catabolic operons in bacteria Mol. Microbiol. 28 1998 865 874
-
(1998)
Mol. Microbiol.
, vol.28
, pp. 865-874
-
-
Stulke, J.1
Arnaud, M.2
Rapoport, G.3
Martin-Verstraete, I.4
-
94
-
-
0036034303
-
Phylogeny of phosphoryl transfer proteins of the phosphoenolpyruvate- dependent sugar-transporting phosphotransferase system
-
K.-Y. Hu, and M.H. Saier Phylogeny of phosphoryl transfer proteins of the phosphoenolpyruvate-dependent sugar-transporting phosphotransferase system Res. Microbiol. 153 2002 405 415
-
(2002)
Res. Microbiol.
, vol.153
, pp. 405-415
-
-
Hu, K.-Y.1
Saier, M.H.2
-
95
-
-
0030950024
-
Modular multidomain phosphoryl transfer proteins of bacteria
-
J. Reizer, and M.H. Saier Modular multidomain phosphoryl transfer proteins of bacteria Curr. Opin. Struct. Biol. 7 1997 407 415
-
(1997)
Curr. Opin. Struct. Biol.
, vol.7
, pp. 407-415
-
-
Reizer, J.1
Saier, M.H.2
-
96
-
-
0344564161
-
Regulation of the lic operon of Bacillus subtilis and characterization of potential phosphorylation sites of the LicR regulator protein by site-directed mutagenesis
-
S. Tobisch, J. Stülke, and M. Hecker Regulation of the lic operon of Bacillus subtilis and characterization of potential phosphorylation sites of the LicR regulator protein by site-directed mutagenesis J. Bacteriol. 181 1999 4995 5003
-
(1999)
J. Bacteriol.
, vol.181
, pp. 4995-5003
-
-
Tobisch, S.1
Stülke, J.2
Hecker, M.3
-
97
-
-
0035853296
-
Regulatory potential, phyletic distribution and evolution of ancient, intracellular small-molecule-binding domains
-
V. Anantharaman, E.V. Koonin, and L. Aravind Regulatory potential, phyletic distribution and evolution of ancient, intracellular small-molecule-binding domains J. Mol. Biol. 307 2001 1271 1292
-
(2001)
J. Mol. Biol.
, vol.307
, pp. 1271-1292
-
-
Anantharaman, V.1
Koonin, E.V.2
Aravind, L.3
-
98
-
-
0029360452
-
The FHA domain: A putative nuclear signalling domain found in protein kinases and transcription factors
-
K. Hofmann, and P. Bucher The FHA domain: a putative nuclear signalling domain found in protein kinases and transcription factors Trends Biochem. Sci. 20 1995 347 349
-
(1995)
Trends Biochem. Sci.
, vol.20
, pp. 347-349
-
-
Hofmann, K.1
Bucher, P.2
-
99
-
-
0348223992
-
An FHA phosphoprotein recognition domain mediates protein EmbR phosphorylation by PknH, a Ser/Thr protein kinase from Mycobacterium tuberculosis
-
V. Molle, L. Kremer, C. Girard-Blanc, G.S. Besra, A.J. Cozzone, and J.-F.O. Prost An FHA phosphoprotein recognition domain mediates protein EmbR phosphorylation by PknH, a Ser/Thr protein kinase from Mycobacterium tuberculosis Biochemistry 42 2003 15300 15309
-
(2003)
Biochemistry
, vol.42
, pp. 15300-15309
-
-
Molle, V.1
Kremer, L.2
Girard-Blanc, C.3
Besra, G.S.4
Cozzone, A.J.5
Prost, J.-F.O.6
-
101
-
-
0031571642
-
The structure of the cofactor-binding fragment of the LysR family member, CysB: A familiar fold with a surprising subunit arrangement
-
R. Tyrrell, K.H. Verschueren, E.J. Dodson, G.N. Murshudov, C. Addy, and A.J. Wilkinson The structure of the cofactor-binding fragment of the LysR family member, CysB: a familiar fold with a surprising subunit arrangement Structure 5 1997 1017 1032
-
(1997)
Structure
, vol.5
, pp. 1017-1032
-
-
Tyrrell, R.1
Verschueren, K.H.2
Dodson, E.J.3
Murshudov, G.N.4
Addy, C.5
Wilkinson, A.J.6
-
102
-
-
0027256676
-
Structural, functional, and evolutionary relationships among extracellular solute-binding receptors of bacteria
-
R. Tam, and M.H. Saier Structural, functional, and evolutionary relationships among extracellular solute-binding receptors of bacteria Microbiol. Rev. 57 1993 320 346
-
(1993)
Microbiol. Rev.
, vol.57
, pp. 320-346
-
-
Tam, R.1
Saier, M.H.2
-
103
-
-
0026334041
-
Sequence and evolution of the FruR protein of Salmonella typhimurium: A pleiotropic transcriptional regulatory protein possessing both activator and repressor functions which is homologous to the periplasmic ribose-binding protein
-
N.B. Vartak, J. Reizer, A. Reizer, J.T. Gripp, E.A. Groisman, L.F. Wu, J.M. Tomich, and M.H. Saier Sequence and evolution of the FruR protein of Salmonella typhimurium: a pleiotropic transcriptional regulatory protein possessing both activator and repressor functions which is homologous to the periplasmic ribose-binding protein Res. Microbiol. 142 1991 951 963
-
(1991)
Res. Microbiol.
, vol.142
, pp. 951-963
-
-
Vartak, N.B.1
Reizer, J.2
Reizer, A.3
Gripp, J.T.4
Groisman, E.A.5
Wu, L.F.6
Tomich, J.M.7
Saier, M.H.8
-
104
-
-
0037020177
-
A novel ligand-binding domain involved in regulation of amino acid metabolism in prokaryotes
-
T.J.G. Ettema, A.B. Brinkman, T.H. Tani, J.B. Rafferty, and J. Van Der Oost A novel ligand-binding domain involved in regulation of amino acid metabolism in prokaryotes J. Biol. Chem. 277 2002 37464 37468
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 37464-37468
-
-
Ettema, T.J.G.1
Brinkman, A.B.2
Tani, T.H.3
Rafferty, J.B.4
Van Der Oost, J.5
-
105
-
-
0033574503
-
Gleaning non-trivial structural, functional and evolutionary information about proteins by iterative database searches
-
L. Aravind, and E.V. Koonin Gleaning non-trivial structural, functional and evolutionary information about proteins by iterative database searches J. Mol. Biol. 287 1999 1023 1040
-
(1999)
J. Mol. Biol.
, vol.287
, pp. 1023-1040
-
-
Aravind, L.1
Koonin, E.V.2
-
106
-
-
0028242939
-
Wilson disease and Menkes disease: New handles on heavy-metal transport
-
P.C. Bull, and D.W. Cox Wilson disease and Menkes disease: new handles on heavy-metal transport Trends Genet. 10 1994 246 252
-
(1994)
Trends Genet.
, vol.10
, pp. 246-252
-
-
Bull, P.C.1
Cox, D.W.2
-
107
-
-
0035663539
-
Evolution of functional diversity in the cupin superfamily
-
J.M. Dunwell, A. Culham, C.E. Carter, C.R. Sosa-Aguirre, and P.W. Goodenough Evolution of functional diversity in the cupin superfamily Trends Biochem. Sci. 26 2001 740 746
-
(2001)
Trends Biochem. Sci.
, vol.26
, pp. 740-746
-
-
Dunwell, J.M.1
Culham, A.2
Carter, C.E.3
Sosa-Aguirre, C.R.4
Goodenough, P.W.5
-
108
-
-
0031016272
-
The structure of a domain common to archaebacteria and the homocystinuria disease protein
-
A. Bateman The structure of a domain common to archaebacteria and the homocystinuria disease protein Trends Biochem. Sci. 22 1997 12 13
-
(1997)
Trends Biochem. Sci.
, vol.22
, pp. 12-13
-
-
Bateman, A.1
-
109
-
-
0035905808
-
Crystal structure of the transcription activator BmrR bound to DNA and a drug
-
E.E. Heldwein, and R.G. Brennan Crystal structure of the transcription activator BmrR bound to DNA and a drug Nature 409 2001 378 382
-
(2001)
Nature
, vol.409
, pp. 378-382
-
-
Heldwein, E.E.1
Brennan, R.G.2
-
110
-
-
0038664315
-
HutC/FarR-like bacterial transcription factors of the GntR family contain a small molecule-binding domain of the chorismate lyase fold
-
L. Aravind, and V. Anantharaman HutC/FarR-like bacterial transcription factors of the GntR family contain a small molecule-binding domain of the chorismate lyase fold FEMS Microbiol. Lett. 222 2003 17 23
-
(2003)
FEMS Microbiol. Lett.
, vol.222
, pp. 17-23
-
-
Aravind, L.1
Anantharaman, V.2
-
111
-
-
0037224131
-
Structure of Escherichia coli ribose-5-phosphate isomerase: A ubiquitous enzyme of the pentose phosphate pathway and the Calvin cycle
-
R.G. Zhang, C.E. Andersson, A. Savchenko, T. Skarina, E. Evdokimova, S. Beasley, C.H. Arrowsmith, A.M. Edwards, A. Joachimiak, and S.L. Mowbray Structure of Escherichia coli ribose-5-phosphate isomerase: a ubiquitous enzyme of the pentose phosphate pathway and the Calvin cycle Structure (Cambridge) 11 2003 31 42
-
(2003)
Structure (Cambridge)
, vol.11
, pp. 31-42
-
-
Zhang, R.G.1
Andersson, C.E.2
Savchenko, A.3
Skarina, T.4
Evdokimova, E.5
Beasley, S.6
Arrowsmith, C.H.7
Edwards, A.M.8
Joachimiak, A.9
Mowbray, S.L.10
-
112
-
-
0027421793
-
Two global regulatory systems (Crp and Arc) control the cobalamin/propanediol regulon of Salmonella typhimurium
-
M. Ailion, T.A. Bobik, and J.R. Roth Two global regulatory systems (Crp and Arc) control the cobalamin/propanediol regulon of Salmonella typhimurium J. Bacteriol. 175 1993 7200 7208
-
(1993)
J. Bacteriol.
, vol.175
, pp. 7200-7208
-
-
Ailion, M.1
Bobik, T.A.2
Roth, J.R.3
-
113
-
-
0028821259
-
Nucleotide sequence of iagA and iagB genes involved in invasion of HeLa cells by Salmonella enterica subsp. enterica ser
-
I. Miras, D. Hermant, N. Arricau, and M.Y. Popoff Nucleotide sequence of iagA and iagB genes involved in invasion of HeLa cells by Salmonella enterica subsp. enterica ser Typhi. Res. Microbiol. 146 1995 17 20
-
(1995)
Typhi. Res. Microbiol.
, vol.146
, pp. 17-20
-
-
Miras, I.1
Hermant, D.2
Arricau, N.3
Popoff, M.Y.4
-
114
-
-
0033569296
-
Structure of the Escherichia coli TolB protein determined by MAD methods at 1.95 Å resolution
-
C. Abergel, E. Bouveret, J.M. Claverie, K. Brown, A. Rigal, C. Lazdunski, and H. Benedetti Structure of the Escherichia coli TolB protein determined by MAD methods at 1.95 Å resolution Struct. Fold Des. 7 1999 1291 1300
-
(1999)
Struct. Fold Des.
, vol.7
, pp. 1291-1300
-
-
Abergel, C.1
Bouveret, E.2
Claverie, J.M.3
Brown, K.4
Rigal, A.5
Lazdunski, C.6
Benedetti, H.7
-
115
-
-
0034650563
-
The structure of TolB, an essential component of the tol-dependent translocation system, and its protein-protein interaction with the translocation domain of colicin E9
-
S. Carr, C.N. Penfold, V. Bamford, R. James, and A.M. Hemmings The structure of TolB, an essential component of the tol-dependent translocation system, and its protein-protein interaction with the translocation domain of colicin E9 Struct. Fold Des. 8 2000 57 66
-
(2000)
Struct. Fold Des.
, vol.8
, pp. 57-66
-
-
Carr, S.1
Penfold, C.N.2
Bamford, V.3
James, R.4
Hemmings, A.M.5
-
116
-
-
0036093944
-
The Tol/Pal system function requires an interaction between the C-terminal domain of TolA and the N-terminal domain of TolB
-
A. Walburger, C. Lazdunski, and Y. Corda The Tol/Pal system function requires an interaction between the C-terminal domain of TolA and the N-terminal domain of TolB Mol. Microbiol. 44 2002 695 708
-
(2002)
Mol. Microbiol.
, vol.44
, pp. 695-708
-
-
Walburger, A.1
Lazdunski, C.2
Corda, Y.3
-
117
-
-
0032104227
-
The PCI domain: A common theme in three multiprotein complexes
-
K. Hofmann, and P. Bucher The PCI domain: a common theme in three multiprotein complexes Trends Biochem. Sci. 23 1998 204 205
-
(1998)
Trends Biochem. Sci.
, vol.23
, pp. 204-205
-
-
Hofmann, K.1
Bucher, P.2
-
118
-
-
0031836475
-
Homologues of 26S proteasome subunits are regulators of transcription and translation
-
L. Aravind, and C.P. Ponting Homologues of 26S proteasome subunits are regulators of transcription and translation Protein Sci. 7 1998 1250 1254
-
(1998)
Protein Sci.
, vol.7
, pp. 1250-1254
-
-
Aravind, L.1
Ponting, C.P.2
-
119
-
-
12344261999
-
Crystal structure of subunit VPS25 of the endosomal trafficking complex ESCRT-II
-
A. Wernimont, and W. Weissenhorn Crystal structure of subunit VPS25 of the endosomal trafficking complex ESCRT-II BMC Struct. Biol. 4 2004 10
-
(2004)
BMC Struct. Biol.
, vol.4
, pp. 10
-
-
Wernimont, A.1
Weissenhorn, W.2
-
120
-
-
5044245523
-
ESCRT-II, an endosome-associated complex required for protein sorting: Crystal structure and interactions with ESCRT-III and membranes
-
H. Teo, O. Perisic, B. Gonzãález, and R.L. Williams ESCRT-II, an endosome-associated complex required for protein sorting: crystal structure and interactions with ESCRT-III and membranes Dev. Cell 7 2004 559 569
-
(2004)
Dev. Cell
, vol.7
, pp. 559-569
-
-
Teo, H.1
Perisic, O.2
Gonzãález, B.3
Williams, R.L.4
-
121
-
-
4544255838
-
Structure of the ESCRT-II endosomal trafficking complex
-
A. Hierro, J. Sun, A.S. Rusnak, J. Kim, G. Prag, S.D. Emr, and J.H. Hurley Structure of the ESCRT-II endosomal trafficking complex Nature 431 2004 221 225
-
(2004)
Nature
, vol.431
, pp. 221-225
-
-
Hierro, A.1
Sun, J.2
Rusnak, A.S.3
Kim, J.4
Prag, G.5
Emr, S.D.6
Hurley, J.H.7
-
122
-
-
0028223764
-
Evidence for a protein domain superfamily shared by the cyclins, TFIIB and RB/p107
-
T.J. Gibson, J.D. Thompson, A. Blocker, and T. Kouzarides Evidence for a protein domain superfamily shared by the cyclins, TFIIB and RB/p107 Nucl. Acids Res. 22 1994 946 952
-
(1994)
Nucl. Acids Res.
, vol.22
, pp. 946-952
-
-
Gibson, T.J.1
Thompson, J.D.2
Blocker, A.3
Kouzarides, T.4
-
123
-
-
0033635283
-
Crystal structure of yeast Esa1 suggests a unified mechanism for catalysis and substrate binding by histone acetyltransferases
-
Y. Yan, N.A. Barlev, R.H. Haley, S.L. Berger, and R. Marmorstein Crystal structure of yeast Esa1 suggests a unified mechanism for catalysis and substrate binding by histone acetyltransferases Mol. Cell 6 2000 1195 1205
-
(2000)
Mol. Cell
, vol.6
, pp. 1195-1205
-
-
Yan, Y.1
Barlev, N.A.2
Haley, R.H.3
Berger, S.L.4
Marmorstein, R.5
-
124
-
-
0035119588
-
Structures of two natural product methyltransferases reveal the basis for substrate specificity in plant O-methyltransferases
-
C. Zubieta, X.Z. He, R.A. Dixon, and J.P. Noel Structures of two natural product methyltransferases reveal the basis for substrate specificity in plant O-methyltransferases Nat. Struct. Biol. 8 2001 271 279
-
(2001)
Nat. Struct. Biol.
, vol.8
, pp. 271-279
-
-
Zubieta, C.1
He, X.Z.2
Dixon, R.A.3
Noel, J.P.4
-
125
-
-
0035909088
-
Allosteric control of the oligomerization of carbamoyl phosphate synthetase from Escherichia coli
-
J. Kim, and F.M. Raushel Allosteric control of the oligomerization of carbamoyl phosphate synthetase from Escherichia coli Biochemistry 40 2001 11030 11036
-
(2001)
Biochemistry
, vol.40
, pp. 11030-11036
-
-
Kim, J.1
Raushel, F.M.2
-
126
-
-
0029815789
-
Phylogenetic analysis of carbamoylphosphate synthetase genes: Complex evolutionary history includes an internal duplication within a gene which can root the tree of life
-
F.S. Lawson, R.L. Charlebois, and J.A. Dillon Phylogenetic analysis of carbamoylphosphate synthetase genes: complex evolutionary history includes an internal duplication within a gene which can root the tree of life Mol. Biol. Evol. 13 1996 970 977
-
(1996)
Mol. Biol. Evol.
, vol.13
, pp. 970-977
-
-
Lawson, F.S.1
Charlebois, R.L.2
Dillon, J.A.3
-
127
-
-
0033199713
-
Did DNA replication evolve twice independently
-
D.D. Leipe, L. Aravind, and E.V. Koonin Did DNA replication evolve twice independently Nucl. Acids Res. 27 1999 3389 3401
-
(1999)
Nucl. Acids Res.
, vol.27
, pp. 3389-3401
-
-
Leipe, D.D.1
Aravind, L.2
Koonin, E.V.3
-
128
-
-
0033615355
-
Functional characterization of ABC10alpha, an essential polypeptide shared by all three forms of eukaryotic DNA-dependent RNA polymerases
-
L. Rubbi, S. Labarre-Mariotte, S. Chéldin, and P. Thuriaux Functional characterization of ABC10alpha, an essential polypeptide shared by all three forms of eukaryotic DNA-dependent RNA polymerases J. Biol. Chem. 274 1999 31485 31492
-
(1999)
J. Biol. Chem.
, vol.274
, pp. 31485-31492
-
-
Rubbi, L.1
Labarre-Mariotte, S.2
Chéldin, S.3
Thuriaux, P.4
-
129
-
-
0242692671
-
Multiple sigma subunits and the partitioning of bacterial transcription space
-
T.M. Gruber, and C.A. Gross Multiple sigma subunits and the partitioning of bacterial transcription space Annu. Rev. Microbiol. 57 2003 441 466
-
(2003)
Annu. Rev. Microbiol.
, vol.57
, pp. 441-466
-
-
Gruber, T.M.1
Gross, C.A.2
-
130
-
-
2942576138
-
Evolution of bacterial RNA polymerase: Implications for large-scale bacterial phylogeny, domain accretion, and horizontal gene transfer
-
L.M. Iyer, E.V. Koonin, and L. Aravind Evolution of bacterial RNA polymerase: implications for large-scale bacterial phylogeny, domain accretion, and horizontal gene transfer Gene 335 2004 73 88
-
(2004)
Gene
, vol.335
, pp. 73-88
-
-
Iyer, L.M.1
Koonin, E.V.2
Aravind, L.3
-
131
-
-
0031866597
-
Evolution of new protein function: Recombinational enhancer Fis originated by horizontal gene transfer from the transcriptional regulator NtrC
-
E. Morett, and P. Bork Evolution of new protein function: recombinational enhancer Fis originated by horizontal gene transfer from the transcriptional regulator NtrC FEBS Lett. 433 1998 108 112
-
(1998)
FEBS Lett.
, vol.433
, pp. 108-112
-
-
Morett, E.1
Bork, P.2
-
132
-
-
0141922979
-
Crystal structure and functional analysis of a nucleosome recognition module of the remodeling factor ISWI
-
T. Gruene, J. Brzeski, A. Eberharter, C.R. Clapier, D.F.V. Corona, P.B. Becker, and C.W. Mueller Crystal structure and functional analysis of a nucleosome recognition module of the remodeling factor ISWI Mol. Cell. 12 2003 449 460
-
(2003)
Mol. Cell.
, vol.12
, pp. 449-460
-
-
Gruene, T.1
Brzeski, J.2
Eberharter, A.3
Clapier, C.R.4
Corona, D.F.V.5
Becker, P.B.6
Mueller, C.W.7
-
133
-
-
0343415756
-
Identification and characterization of a new prespore-specific regulatory gene, rsfA, of Bacillus subtilis
-
L. Juan Wu, and J. Errington Identification and characterization of a new prespore-specific regulatory gene, rsfA, of Bacillus subtilis J. Bacteriol. 182 2000 418 424
-
(2000)
J. Bacteriol.
, vol.182
, pp. 418-424
-
-
Juan Wu, L.1
Errington, J.2
-
134
-
-
0037072818
-
Involvement of a bifunctional, paired-like DNA-binding domain and a transpositional enhancer in sleeping beauty transposition
-
Z. Izsak, D. Khare, J. Behlke, U. Heinemann, R.H. Plasterk, and Z.n. Ivics Involvement of a bifunctional, paired-like DNA-binding domain and a transpositional enhancer in sleeping beauty transposition J. Biol. Chem. 277 2002 34581 34588
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 34581-34588
-
-
Izsak, Z.1
Khare, D.2
Behlke, J.3
Heinemann, U.4
Plasterk, R.H.5
Ivics, Z.N.6
-
135
-
-
0027426925
-
DNA sequence recognition by Pax proteins: Bipartite structure of the paired domain and its binding site
-
T. Czerny, G. Schaffner, and M. Busslinger DNA sequence recognition by Pax proteins: bipartite structure of the paired domain and its binding site Genes Dev. 7 1993 2048 2061
-
(1993)
Genes Dev.
, vol.7
, pp. 2048-2061
-
-
Czerny, T.1
Schaffner, G.2
Busslinger, M.3
-
136
-
-
0035803581
-
Crystal structure of the CENP-B protein-DNA complex: The DNA-binding domains of CENP-B induce kinks in the CENP-B box DNA
-
Y. Tanaka, O. Nureki, H. Kurumizaka, S. Fukai, S. Kawaguchi, M. Ikuta, J. Iwahara, T. Okazaki, and S. Yokoyama Crystal structure of the CENP-B protein-DNA complex: the DNA-binding domains of CENP-B induce kinks in the CENP-B box DNA EMBO J. 20 2001 6612 6618
-
(2001)
EMBO J.
, vol.20
, pp. 6612-6618
-
-
Tanaka, Y.1
Nureki, O.2
Kurumizaka, H.3
Fukai, S.4
Kawaguchi, S.5
Ikuta, M.6
Iwahara, J.7
Okazaki, T.8
Yokoyama, S.9
-
137
-
-
0029991222
-
Tiggers and DNA transposon fossils in the human genome
-
A.F. Smit, and A.D. Riggs Tiggers and DNA transposon fossils in the human genome Proc. Natl. Acad. Sci. USA 93 1996 1443 1448
-
(1996)
Proc. Natl. Acad. Sci. USA
, vol.93
, pp. 1443-1448
-
-
Smit, A.F.1
Riggs, A.D.2
-
138
-
-
0033955942
-
Comparative genome analysis of the pathogenic spirochetes Borrelia burgdorferi and Treponema pallidum
-
G. Subramanian, E.V. Koonin, and L. Aravind Comparative genome analysis of the pathogenic spirochetes Borrelia burgdorferi and Treponema pallidum Infect. Immun. 68 2000 1633 1648
-
(2000)
Infect. Immun.
, vol.68
, pp. 1633-1648
-
-
Subramanian, G.1
Koonin, E.V.2
Aravind, L.3
-
139
-
-
0026521899
-
A gene near the plasmid pSa origin of replication encodes a nuclease
-
S.M. Close, and C.I. Kado A gene near the plasmid pSa origin of replication encodes a nuclease Mol. Microbiol. 6 1992 521 527
-
(1992)
Mol. Microbiol.
, vol.6
, pp. 521-527
-
-
Close, S.M.1
Kado, C.I.2
-
140
-
-
1542472730
-
New connections in the prokaryotic toxin-antitoxin network: Relationship with the eukaryotic nonsense-mediated RNA decay system
-
V. Anantharaman, and L. Aravind New connections in the prokaryotic toxin-antitoxin network: relationship with the eukaryotic nonsense-mediated RNA decay system Genome Biol. 2003 4
-
(2003)
Genome Biol.
, pp. 4
-
-
Anantharaman, V.1
Aravind, L.2
-
141
-
-
0025643360
-
Characterisation of a repressor gene (xre) and a temperature-sensitive allele from the Bacillus subtilis prophage, PBSX
-
H.E. Wood, K.M. Devine, and D.J. McConnell Characterisation of a repressor gene (xre) and a temperature-sensitive allele from the Bacillus subtilis prophage, PBSX Gene 96 1990 83 88
-
(1990)
Gene
, vol.96
, pp. 83-88
-
-
Wood, H.E.1
Devine, K.M.2
McConnell, D.J.3
-
142
-
-
0030788571
-
Multiprotein bridging factor 1 (MBF1) is an evolutionarily conserved transcriptional coactivator that connects a regulatory factor and TATA element-binding protein
-
K.i. Takemaru, F.Q. Li, H. Ueda, and S. Hirose Multiprotein bridging factor 1 (MBF1) is an evolutionarily conserved transcriptional coactivator that connects a regulatory factor and TATA element-binding protein Proc. Natl. Acad. Sci. USA 94 1997 7251 7256
-
(1997)
Proc. Natl. Acad. Sci. USA
, vol.94
, pp. 7251-7256
-
-
Takemaru, K.I.1
Li, F.Q.2
Ueda, H.3
Hirose, S.4
-
143
-
-
0032169864
-
A novel DNA-binding motif in MarA: The first structure for an AraC family transcriptional activator
-
S. Rhee, R.G. Martin, J.L. Rosner, and D.R. Davies A novel DNA-binding motif in MarA: the first structure for an AraC family transcriptional activator Proc. Natl. Acad. Sci. USA 95 1998 10413 10418
-
(1998)
Proc. Natl. Acad. Sci. USA
, vol.95
, pp. 10413-10418
-
-
Rhee, S.1
Martin, R.G.2
Rosner, J.L.3
Davies, D.R.4
-
144
-
-
0035156057
-
Transcriptional activation of Bordetella alcaligin siderophore genes requires the AlcR regulator with alcaligin as inducer
-
T.J. Brickman, H.Y. Kang, and S.K. Armstrong Transcriptional activation of Bordetella alcaligin siderophore genes requires the AlcR regulator with alcaligin as inducer J. Bacteriol. 183 2001 483 489
-
(2001)
J. Bacteriol.
, vol.183
, pp. 483-489
-
-
Brickman, T.J.1
Kang, H.Y.2
Armstrong, S.K.3
-
145
-
-
0038476181
-
Structural basis of replication origin recognition by the DnaA protein
-
N. Fujikawa, H. Kurumizaka, O. Nureki, T. Terada, M. Shirouzu, T. Katayama, and S. Yokoyama Structural basis of replication origin recognition by the DnaA protein Nucl. Acids Res. 31 2003 2077 2086
-
(2003)
Nucl. Acids Res.
, vol.31
, pp. 2077-2086
-
-
Fujikawa, N.1
Kurumizaka, H.2
Nureki, O.3
Terada, T.4
Shirouzu, M.5
Katayama, T.6
Yokoyama, S.7
-
146
-
-
0347381285
-
DnaA as a transcription regulator
-
W. Messer, and C. Weigel DnaA as a transcription regulator Meth. Enzymol. 370 2003 338 349
-
(2003)
Meth. Enzymol.
, vol.370
, pp. 338-349
-
-
Messer, W.1
Weigel, C.2
-
147
-
-
0036250668
-
ARID proteins: A diverse family of DNA binding proteins implicated in the control of cell growth, differentiation, and development
-
D. Wilsker, A. Patsialou, P.B. Dallas, and E. Moran ARID proteins: a diverse family of DNA binding proteins implicated in the control of cell growth, differentiation, and development Cell Growth Differ. 13 2002 95 106
-
(2002)
Cell Growth Differ.
, vol.13
, pp. 95-106
-
-
Wilsker, D.1
Patsialou, A.2
Dallas, P.B.3
Moran, E.4
-
148
-
-
18644379392
-
Crystal structure of the RuvA-RuvB complex: A structural basis for the Holliday junction migrating motor machinery
-
K. Yamada, T. Miyata, D. Tsuchiya, T. Oyama, Y. Fujiwara, T. Ohnishi, H. Iwasaki, H. Shinagawa, M. Ariyoshi, K. Mayanagi, and K. Morikawa Crystal structure of the RuvA-RuvB complex: a structural basis for the Holliday junction migrating motor machinery Mol. Cell 10 2002 671 681
-
(2002)
Mol. Cell
, vol.10
, pp. 671-681
-
-
Yamada, K.1
Miyata, T.2
Tsuchiya, D.3
Oyama, T.4
Fujiwara, Y.5
Ohnishi, T.6
Iwasaki, H.7
Shinagawa, H.8
Ariyoshi, M.9
Mayanagi, K.10
Morikawa, K.11
-
149
-
-
0036049587
-
Discovery of two novel families of proteins that are proposed to interact with prokaryotic SMC proteins, and characterization of the Bacillus subtilis family members ScpA and ScpB
-
J.r. Soppa, K. Kobayashi, M.-F.o. Noirot-Gros, D. Oesterhelt, S.D. Ehrlich, E. Dervyn, N. Ogasawara, and S. Moriya Discovery of two novel families of proteins that are proposed to interact with prokaryotic SMC proteins, and characterization of the Bacillus subtilis family members ScpA and ScpB Mol. Microbiol. 45 2002 59 71
-
(2002)
Mol. Microbiol.
, vol.45
, pp. 59-71
-
-
Soppa, J.R.1
Kobayashi, K.2
Noirot-Gros, M.-F.O.3
Oesterhelt, D.4
Ehrlich, S.D.5
Dervyn, E.6
Ogasawara, N.7
Moriya, S.8
-
150
-
-
0037124369
-
Cell cycle-dependent localization of two novel prokaryotic chromosome segregation and condensation proteins in Bacillus subtilis that interact with SMC protein
-
J. Mascarenhas, J.R. Soppa, A.V. Strunnikov, and P.L. Graumann Cell cycle-dependent localization of two novel prokaryotic chromosome segregation and condensation proteins in Bacillus subtilis that interact with SMC protein EMBO J. 21 2002 3108 3118
-
(2002)
EMBO J.
, vol.21
, pp. 3108-3118
-
-
Mascarenhas, J.1
Soppa, J.R.2
Strunnikov, A.V.3
Graumann, P.L.4
-
151
-
-
0033546005
-
Crystal structure of the Zalpha domain of the human editing enzyme ADAR1 bound to left-handed Z-DNA
-
T. Schwartz, M.A. Rould, K. Lowenhaupt, A. Herbert, and A. Rich Crystal structure of the Zalpha domain of the human editing enzyme ADAR1 bound to left-handed Z-DNA Science 284 1999 1841 1845
-
(1999)
Science
, vol.284
, pp. 1841-1845
-
-
Schwartz, T.1
Rould, M.A.2
Lowenhaupt, K.3
Herbert, A.4
Rich, A.5
-
152
-
-
0033555682
-
Structure-function analysis of the Z-DNA-binding domain Zalpha of dsRNA adenosine deaminase type I reveals similarity to the (α + β) family of helix-turn-helix proteins
-
M. Schade, C.J. Turner, K. Lowenhaupt, A. Rich, and A. Herbert Structure-function analysis of the Z-DNA-binding domain Zalpha of dsRNA adenosine deaminase type I reveals similarity to the (α + β) family of helix-turn-helix proteins EMBO J. 18 1999 470 479
-
(1999)
EMBO J.
, vol.18
, pp. 470-479
-
-
Schade, M.1
Turner, C.J.2
Lowenhaupt, K.3
Rich, A.4
Herbert, A.5
-
153
-
-
0035942258
-
Similarities between the DNA replication initiators of Gram-negative bacteria plasmids (RepA) and eukaryotes (Orc4p)/archaea (Cdc6p)
-
R. Giraldo, and R. Diaz-Orejas Similarities between the DNA replication initiators of Gram-negative bacteria plasmids (RepA) and eukaryotes (Orc4p)/archaea (Cdc6p) Proc. Natl. Acad. Sci. USA 98 2001 4938 4943
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 4938-4943
-
-
Giraldo, R.1
Diaz-Orejas, R.2
-
154
-
-
0033634866
-
Structure and function of Cdc6/Cdc18: Implications for origin recognition and checkpoint control
-
J. Liu, C.L. Smith, D. DeRyckere, K. DeAngelis, G.S. Martin, and J.M. Berger Structure and function of Cdc6/Cdc18: implications for origin recognition and checkpoint control Mol. Cell 6 2000 637 648
-
(2000)
Mol. Cell
, vol.6
, pp. 637-648
-
-
Liu, J.1
Smith, C.L.2
Deryckere, D.3
Deangelis, K.4
Martin, G.S.5
Berger, J.M.6
-
155
-
-
0029982706
-
A consensus motif in the RFX DNA binding domain and binding domain mutants with altered specificity
-
P. Emery, M. Strubin, K. Hofmann, P. Bucher, B. Mach, and W. Reith A consensus motif in the RFX DNA binding domain and binding domain mutants with altered specificity Mol. Cell Biol. 16 1996 4486 4494
-
(1996)
Mol. Cell Biol.
, vol.16
, pp. 4486-4494
-
-
Emery, P.1
Strubin, M.2
Hofmann, K.3
Bucher, P.4
MacH, B.5
Reith, W.6
-
156
-
-
0036224773
-
Phage P4 origin-binding domain structure reveals a mechanism for regulation of DNA-binding activity by homo- and heterodimerization of winged helix proteins
-
H.-J. Yeo, G.N. Ziegelin, S. Korolev, R. Calendar, E. Lanka, and G. Waksman Phage P4 origin-binding domain structure reveals a mechanism for regulation of DNA-binding activity by homo- and heterodimerization of winged helix proteins Mol. Microbiol. 43 2002 855 867
-
(2002)
Mol. Microbiol.
, vol.43
, pp. 855-867
-
-
Yeo, H.-J.1
Ziegelin, G.N.2
Korolev, S.3
Calendar, R.4
Lanka, E.5
Waksman, G.6
-
157
-
-
0036529621
-
Comparative genomics and evolution of proteins involved in RNA metabolism
-
V. Anantharaman, E.V. Koonin, and L. Aravind Comparative genomics and evolution of proteins involved in RNA metabolism Nucl. Acids Res. 30 2002 1427 1464
-
(2002)
Nucl. Acids Res.
, vol.30
, pp. 1427-1464
-
-
Anantharaman, V.1
Koonin, E.V.2
Aravind, L.3
-
158
-
-
0033614032
-
Transient ADP-ribosylation of a 2′-phosphate implicated in its removal from ligated tRNA during splicing in yeast
-
S.L. Spinelli, R. Kierzek, D.H. Turner, and E.M. Phizicky Transient ADP-ribosylation of a 2′-phosphate implicated in its removal from ligated tRNA during splicing in yeast J. Biol. Chem. 274 1999 2637 2644
-
(1999)
J. Biol. Chem.
, vol.274
, pp. 2637-2644
-
-
Spinelli, S.L.1
Kierzek, R.2
Turner, D.H.3
Phizicky, E.M.4
-
159
-
-
0033559030
-
Structural basis of DNA recognition by the heterodimeric cell cycle transcription factor E2F-DP
-
N. Zheng, E. Fraenkel, C.O. Pabo, and N.P. Pavletich Structural basis of DNA recognition by the heterodimeric cell cycle transcription factor E2F-DP Genes Dev. 13 1999 666 674
-
(1999)
Genes Dev.
, vol.13
, pp. 666-674
-
-
Zheng, N.1
Fraenkel, E.2
Pabo, C.O.3
Pavletich, N.P.4
-
160
-
-
0032482927
-
Structural homology between the Rap30 DNA-binding domain and linker histone H5: Implications for preinitiation complex assembly
-
C.M. Groft, S.N. Uljon, R. Wang, and M.H. Werner Structural homology between the Rap30 DNA-binding domain and linker histone H5: implications for preinitiation complex assembly Proc. Natl. Acad. Sci. USA 95 1998 9117 9122
-
(1998)
Proc. Natl. Acad. Sci. USA
, vol.95
, pp. 9117-9122
-
-
Groft, C.M.1
Uljon, S.N.2
Wang, R.3
Werner, M.H.4
-
161
-
-
0348111451
-
An extended winged helix domain in general transcription factor E/IIE alpha
-
A. Meinhart, J. Blobel, and P. Cramer An extended winged helix domain in general transcription factor E/IIE alpha J. Biol. Chem. 278 2003 48267 48274
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 48267-48274
-
-
Meinhart, A.1
Blobel, J.2
Cramer, P.3
-
162
-
-
0029048694
-
Common sequence and structural features in the heat-shock factor and Ets families of DNA-binding domains
-
D. Landsman, and A.P. Wolffe Common sequence and structural features in the heat-shock factor and Ets families of DNA-binding domains Trends Biochem. Sci. 20 1995 225 226
-
(1995)
Trends Biochem. Sci.
, vol.20
, pp. 225-226
-
-
Landsman, D.1
Wolffe, A.P.2
-
163
-
-
4544273485
-
Diversity in structure and function of the Ets family PNT domains
-
C.D. Mackereth, M. Scharpf, L.N. Gentile, S.E. MacIntosh, C.M. Slupsky, and L.P. McIntosh Diversity in structure and function of the Ets family PNT domains J. Mol. Biol. 342 2004 1249 1264
-
(2004)
J. Mol. Biol.
, vol.342
, pp. 1249-1264
-
-
MacKereth, C.D.1
Scharpf, M.2
Gentile, L.N.3
MacIntosh, S.E.4
Slupsky, C.M.5
McIntosh, L.P.6
-
164
-
-
0035910274
-
DNA-binding of phenylalanyl-tRNA synthetase is accompanied by loop formation of the double-stranded DNA
-
X. Dou, S. Limmer, and R. Kreutzer DNA-binding of phenylalanyl-tRNA synthetase is accompanied by loop formation of the double-stranded DNA J. Mol. Biol. 305 2001 451 458
-
(2001)
J. Mol. Biol.
, vol.305
, pp. 451-458
-
-
Dou, X.1
Limmer, S.2
Kreutzer, R.3
-
165
-
-
0038182530
-
A conserved structural motif at the N terminus of bacterial translation initiation factor IF2
-
B.S.g. Laursen, K.K. Mortensen, H.U. Sperling-Petersen, and D.W. Hoffman A conserved structural motif at the N terminus of bacterial translation initiation factor IF2 J. Biol. Chem. 278 2003 16320 16328
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 16320-16328
-
-
Laursen, B.S.G.1
Mortensen, K.K.2
Sperling-Petersen, H.U.3
Hoffman, D.W.4
-
166
-
-
1842505115
-
Crystal structure of the excisionase-DNA complex from bacteriophage lambda
-
M.D. Sam, D. Cascio, R.C. Johnson, and R.T. Clubb Crystal structure of the excisionase-DNA complex from bacteriophage lambda J. Mol. Biol. 338 2004 229 240
-
(2004)
J. Mol. Biol.
, vol.338
, pp. 229-240
-
-
Sam, M.D.1
Cascio, D.2
Johnson, R.C.3
Clubb, R.T.4
-
167
-
-
0035170973
-
The Mu repressor-DNA complex contains an immobilized 'wing' within the minor groove
-
J.M. Wojciak, J. Iwahara, and R.T. Clubb The Mu repressor-DNA complex contains an immobilized 'wing' within the minor groove Nat. Struct. Biol. 8 2001 84 90
-
(2001)
Nat. Struct. Biol.
, vol.8
, pp. 84-90
-
-
Wojciak, J.M.1
Iwahara, J.2
Clubb, R.T.3
-
168
-
-
18444412561
-
Insights into specific DNA recognition during the assembly of a viral genome packaging machine
-
T. de Beer, J. Fang, M. Ortega, Q. Yang, L. Maes, C. Duffy, N. Berton, J.
-
(2002)
Mol. Cell
, vol.9
, pp. 981-991
-
-
De Beer, T.1
Fang, J.2
Ortega, M.3
Yang, Q.4
Maes, L.5
Duffy, C.6
Berton, N.7
Sippy, J.8
Overduin, M.9
Feiss, M.10
Catalano, C.E.11
-
169
-
-
0031825065
-
Solution structure of the DNA- and RPA-binding domain of the human repair factor XPA
-
T. Ikegami, I. Kuraoka, M. Saijo, N. Kodo, Y. Kyogoku, K. Morikawa, K. Tanaka, and M. Shirakawa Solution structure of the DNA- and RPA-binding domain of the human repair factor XPA Nat. Struct. Biol. 5 1998 701 706
-
(1998)
Nat. Struct. Biol.
, vol.5
, pp. 701-706
-
-
Ikegami, T.1
Kuraoka, I.2
Saijo, M.3
Kodo, N.4
Kyogoku, Y.5
Morikawa, K.6
Tanaka, K.7
Shirakawa, M.8
-
170
-
-
0035943352
-
Localization of L11 protein on the ribosome and elucidation of its involvement in EF-G-dependent translocation
-
R.K. Agrawal, J. Linde, J. Sengupta, K.H. Nierhaus, and J. Frank Localization of L11 protein on the ribosome and elucidation of its involvement in EF-G-dependent translocation J. Mol. Biol. 311 2001 777 787
-
(2001)
J. Mol. Biol.
, vol.311
, pp. 777-787
-
-
Agrawal, R.K.1
Linde, J.2
Sengupta, J.3
Nierhaus, K.H.4
Frank, J.5
-
171
-
-
0041828241
-
Scaling laws in the functional content of genomes
-
E. van Nimwegen Scaling laws in the functional content of genomes Trends Genet. 19 2003 479 484
-
(2003)
Trends Genet.
, vol.19
, pp. 479-484
-
-
Van Nimwegen, E.1
-
172
-
-
9144247750
-
Reductive evolution suggested from the complete genome sequence of a plant-pathogenic phytoplasma
-
K. Oshima, S. Kakizawa, H. Nishigawa, H.-Y. Jung, W. Wei, S. Suzuki, R. Arashida, D. Nakata, S.-i. Miyata, M. Ugaki, and S. Namba Reductive evolution suggested from the complete genome sequence of a plant-pathogenic phytoplasma Nat. Genet. 36 2004 27 29
-
(2004)
Nat. Genet.
, vol.36
, pp. 27-29
-
-
Oshima, K.1
Kakizawa, S.2
Nishigawa, H.3
Jung, H.-Y.4
Wei, W.5
Suzuki, S.6
Arashida, R.7
Nakata, D.8
Miyata, S.-I.9
Ugaki, M.10
Namba, S.11
-
173
-
-
15944385461
-
Identification of putative insertion sequence (IS) associated with members of the aster yellows (AY) phytoplasma group
-
I.-M. Lee, Y. Zhao, and K.D. Bottner Identification of putative insertion sequence (IS) associated with members of the aster yellows (AY) phytoplasma group Phytopathology 2003 93
-
(2003)
Phytopathology
, pp. 93
-
-
Lee, I.-M.1
Zhao, Y.2
Bottner, K.D.3
-
174
-
-
4644353894
-
Comparative analysis of apicomplexa and genomic diversity in eukaryotes
-
T.J. Templeton, L.M. Iyer, V. Anantharaman, S. Enomoto, J.E. Abrahante, G.M. Subramanian, S.L. Hoffman, M.S. Abrahamsen, and L. Aravind Comparative analysis of apicomplexa and genomic diversity in eukaryotes Genome Res. 14 2004 1686 1695
-
(2004)
Genome Res.
, vol.14
, pp. 1686-1695
-
-
Templeton, T.J.1
Iyer, L.M.2
Anantharaman, V.3
Enomoto, S.4
Abrahante, J.E.5
Subramanian, G.M.6
Hoffman, S.L.7
Abrahamsen, M.S.8
Aravind, L.9
-
175
-
-
0347444723
-
MicroRNAs: Genomics, biogenesis, mechanism, and function
-
D.P. Bartel MicroRNAs: genomics, biogenesis, mechanism, and function Cell 116 2004 281 297
-
(2004)
Cell
, vol.116
, pp. 281-297
-
-
Bartel, D.P.1
-
176
-
-
0035195942
-
Non-coding RNAs: The architects of eukaryotic complexity
-
J.S. Mattick Non-coding RNAs: the architects of eukaryotic complexity EMBO Rep. 2 2001 986 991
-
(2001)
EMBO Rep.
, vol.2
, pp. 986-991
-
-
Mattick, J.S.1
-
177
-
-
0242276676
-
Lateral gene transfer and the origins of prokaryotic groups
-
Y. Boucher, C.J. Douady, R.T. Papke, D.A. Walsh, M.E.R. Boudreau, C.L. NesbÃ̧, R.J. Case, and W.F. Doolittle Lateral gene transfer and the origins of prokaryotic groups Annu. Rev. Genet. 37 2003 283 328
-
(2003)
Annu. Rev. Genet.
, vol.37
, pp. 283-328
-
-
Boucher, Y.1
Douady, C.J.2
Papke, R.T.3
Walsh, D.A.4
Boudreau, M.E.R.5
Nesbã̧, C.L.6
Case, R.J.7
Doolittle, W.F.8
-
178
-
-
0031587829
-
Archaea and the origin(s) of DNA replication proteins
-
D.R. Edgell, and W.F. Doolittle Archaea and the origin(s) of DNA replication proteins Cell 89 1997 995 998
-
(1997)
Cell
, vol.89
, pp. 995-998
-
-
Edgell, D.R.1
Doolittle, W.F.2
-
179
-
-
0037791613
-
Evolutionary connection between the catalytic subunits of DNA-dependent RNA polymerases and eukaryotic RNA-dependent RNA polymerases and the origin of RNA polymerases
-
L.M. Iyer, E.V. Koonin, and L. Aravind Evolutionary connection between the catalytic subunits of DNA-dependent RNA polymerases and eukaryotic RNA-dependent RNA polymerases and the origin of RNA polymerases BMC Struct. Biol. 3 2003 1
-
(2003)
BMC Struct. Biol.
, vol.3
, pp. 1
-
-
Iyer, L.M.1
Koonin, E.V.2
Aravind, L.3
-
180
-
-
0037119358
-
The Sulfolobus solfataricus Lrp-like protein LysM regulates lysine biosynthesis in response to lysine availability
-
A.B. Brinkman, S.D. Bell, R.J. Lebbink, W.M. de Vos, and J. van der Oost The Sulfolobus solfataricus Lrp-like protein LysM regulates lysine biosynthesis in response to lysine availability J. Biol. Chem. 277 2002 29537 29549
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 29537-29549
-
-
Brinkman, A.B.1
Bell, S.D.2
Lebbink, R.J.3
De Vos, W.M.4
Van Der Oost, J.5
-
181
-
-
0042528729
-
Heterochromatin and epigenetic control of gene expression
-
S.I.S. Grewal, and D. Moazed Heterochromatin and epigenetic control of gene expression Science 301 2003 798 802
-
(2003)
Science
, vol.301
, pp. 798-802
-
-
Grewal, S.I.S.1
Moazed, D.2
|