Crystal structure of an mRNA-binding fragment of Moorella thermoacetica elongation factor SelB

EMBO Journal

Volumn 21, Issue 15, 2002, Pages 4145-4153

  Selmer, Maria ^a   Su, Xiao Dong ^a  

^a MRC LABORATORY OF MOLECULAR BIOLOGY   (United Kingdom)

Author keywords

Crystallography; Elongation factor; RNA binding; SelB; Selenocysteine

Indexed keywords

ELONGATION FACTOR; ELONGATION FACTOR SELB; GUANOSINE TRIPHOSPHATE; MESSENGER RNA; SELENIUM; SELENOCYSTEINE; TRANSFER RNA; UNCLASSIFIED DRUG; YTTRIUM;

AMINO ACID SEQUENCE; AMINO TERMINAL SEQUENCE; ARTICLE; BINDING SITE; CARBOXY TERMINAL SEQUENCE; CONFORMATIONAL TRANSITION; CRYSTAL STRUCTURE; CRYSTALLOGRAPHY; MOLECULAR RECOGNITION; MOORELLA THERMOACETICA; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROTEIN DOMAIN; PROTEIN RNA BINDING; RNA TRANSLATION; SEQUENCE HOMOLOGY; STEREOSPECIFICITY; STOP CODON;

AMINO ACID SEQUENCE; AMINO ACID SUBSTITUTION; BACTERIAL PROTEINS; BINDING SITES; CLOSTRIDIUM; CRYSTALLOGRAPHY, X-RAY; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; MUTATION, MISSENSE; PEPTIDE ELONGATION FACTORS; PROTEIN CONFORMATION; PROTEIN STRUCTURE, TERTIARY; RIBOSOMES; RNA, BACTERIAL; RNA, MESSENGER; RNA, TRANSFER; SEQUENCE ALIGNMENT; SEQUENCE HOMOLOGY, AMINO ACID; SULFATES;

CLOSTRIDIUM; MOORELLA; MOORELLA THERMOACETICA; POSIBACTERIA;

EID: 0036682596     PISSN: 02614189     EISSN: None     Source Type: Journal    
DOI: 10.1093/emboj/cdf408     Document Type: Article

References (36)

1. ALSCRIPT: A tool to format multiple sequence alignments
2. Recent changes to RasMol, recombining the variants
3. Crystal structure of the 30S ribosomal subunit from Thermus thermophilus: Structure of the proteins and their interactions with 16S RNA
4. Crystallography and NMR system: A new software suite for macromolecular structure determination
5. The CCP4 suite: Programs for protein crystallography
6. Crystal structure of the cyanobacterial metallothionein repressor SmtB: A model for metalloregulatory proteins
7. Identification of a novel translation factor necessary for the incorporation of selenocysteine into protein
8. Winged helix proteins
9. Coding from a distance: Dissection of the mRNA determinants required for the incorporation of selenocysteine into protein
10. Protein structure comparison by alignment of distance matrices
11. Selenocysteine inserting RNA elements modulate GTP hydrolysis of elongation factor SelB
12. Solution structure of mRNA hairpins promoting selenocysteine incorporation in Escherichia coli and their base-specific interaction with special elongation factor SELB
13. Improved methods for building protein models in electron density maps and the location of errors in these models
14. In vitro and in vivo characterization of novel mRNA motifs that bind special elongation factor SelB
15. Crystal structure of a prokaryotic replication initiator protein bound to DNA at 2.6 Å resolution
16. MOLMOL: A program for display and analysis of macromolecular structures
17. Domain structure of the prokaryotic selenocysteine-specific elongation factor SelB
18. Genetic probing of the interaction between the translation factor SelB and its mRNA binding element in Escherichia coli
19. The bulged nucleotide in the Escherichia coli minimal selenocysteine insertion sequence participates in interaction with SelB: A genetic approach
20. TOP: A new method for protein structure comparisons and similarity searches
21. Structural basis for the recognition of DNA repair proteins UNG2 XPA and RAD52 by replication factor RPA
22. Structures of SAP-1 bound to DNA targets from the E74 and c-fos promoters: Insights into DNA sequence discrimination by Ets proteins
23. Crystal structure of the ternary complex of Phe-tRNA-Phe, elongation factor Tu and a GTP analogue
24. Processing of X-ray diffraction data collected in oscillation mode
25. Properties and regulation of the GTPase activities of elongation factors Tu and G and of initiation factor 2
26. Crystal structure of the Zα domain of the human editing enzyme ADAR1 bound to left-handed Z-DNA
27. Visualization of elongation factor Tu on the Escherichia coli ribosome
28. The crystal structure of a low-molecular-weight phosphotyrosine protein phosphatase
29. Dynamics and efficiency in vivo of UGA-directed selenocysteine insertion at the ribosome
30. Automated MAD and MIR structure solution
31. Kinetics of the interaction of translation factor SelB from Escherichia coli with guanosine nucleotides and selenocysteine insertion sequence RNA
32. The ClustalX Windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
33. Atomic structures of the human immunophilin FKBP-12 complexes with FK506 and rapamycin
34. Crystal structure of the ribosome at 5.5 Å resolution
35. The path of messenger RNA through the ribosome
36. Algorithms and thermodynamics for RNA secondary structure prediction: A practical guide