-
1
-
-
0003890119
-
DNA Replication
-
Freeman and Co., New York, NY
-
Kornberg,A. and Baker,T.A. (1992) DNA Replication. W.H. Freeman and Co., New York, NY.
-
(1992)
-
-
Kornberg, A.1
Baker, T.A.2
-
2
-
-
0021720088
-
The dnaA protein complex with the E. coli chromosomal replication origin (oriC) and other DNA sites
-
Fuller,R.S., Funnell,B.E. and Kornberg,A. (1984) The dnaA protein complex with the E. coli chromosomal replication origin (oriC) and other DNA sites. Cell, 38, 889-900.
-
(1984)
Cell
, vol.38
, pp. 889-900
-
-
Fuller, R.S.1
Funnell, B.E.2
Kornberg, A.3
-
3
-
-
0022419397
-
Sites of dnaA protein-binding in the replication origin of the E. coli K-12 chromosome
-
Matsui,M., Oka,A., Takanami,M., Yasuda,S. and Hirota,Y. (1985) Sites of dnaA protein-binding in the replication origin of the E. coli K-12 chromosome. J. Mol. Biol., 184, 529-533.
-
(1985)
J. Mol. Biol.
, vol.184
, pp. 529-533
-
-
Matsui, M.1
Oka, A.2
Takanami, M.3
Yasuda, S.4
Hirota, Y.5
-
4
-
-
0023766613
-
A model for initiation at origins of DNA replication
-
Bramhill,D. and Kornberg,A. (1988) A model for initiation at origins of DNA replication. Cell, 54, 915-918.
-
(1988)
Cell
, vol.54
, pp. 915-918
-
-
Bramhill, D.1
Kornberg, A.2
-
5
-
-
0034063607
-
ATPase switches controlling DNA replication initiation
-
Lee,D.G. and Bell,S.P. (2000) ATPase switches controlling DNA replication initiation. Curr. Opin. Cell Biol., 12, 280-285.
-
(2000)
Curr. Opin. Cell Biol.
, vol.12
, pp. 280-285
-
-
Lee, D.G.1
Bell, S.P.2
-
6
-
-
0036843139
-
The bacterial replication initiator DnaA: DnaA and oriC, the bacterial mode to initiate DNA replication
-
Messer,W. (2002) The bacterial replication initiator DnaA: DnaA and oriC, the bacterial mode to initiate DNA replication. FEMS Microbiol. Rev., 26, 355-374.
-
(2002)
FEMS Microbiol. Rev.
, vol.26
, pp. 355-374
-
-
Messer, W.1
-
7
-
-
0026463867
-
Opening of the replication origin of Escherichia coli by DnaA protein with protein HU or IHF
-
Hwang,D.S. and Kornberg,A. (1992) Opening of the replication origin of Escherichia coli by DnaA protein with protein HU or IHF. J. Biol. Chem., 267, 23083-23086.
-
(1992)
J. Biol. Chem.
, vol.267
, pp. 23083-23086
-
-
Hwang, D.S.1
Kornberg, A.2
-
8
-
-
0035869023
-
Mechanism of origin unwinding: Sequential binding of DnaA to double- and single-stranded DNA
-
Speck,C. and Messer,W. (2001) Mechanism of origin unwinding: sequential binding of DnaA to double- and single-stranded DNA. EMBO J., 20, 1469-1476.
-
(2001)
EMBO J.
, vol.20
, pp. 1469-1476
-
-
Speck, C.1
Messer, W.2
-
9
-
-
0032504050
-
The initiator function of DnaA protein is negatively regulated by the sliding clamp of the E. coli chromosomal replicase
-
Katayama,T., Kubota,T., Kurokawa,K., Crooke,E. and Sekimizu,K. (1998) The initiator function of DnaA protein is negatively regulated by the sliding clamp of the E. coli chromosomal replicase. Cell, 94, 61-71.
-
(1998)
Cell
, vol.94
, pp. 61-71
-
-
Katayama, T.1
Kubota, T.2
Kurokawa, K.3
Crooke, E.4
Sekimizu, K.5
-
10
-
-
0035422651
-
Hda, a novel DnaA-related protein, regulates the replication cycle in Escherichia coli
-
Kato,J. and Katayama,T. (2001) Hda, a novel DnaA-related protein, regulates the replication cycle in Escherichia coli. EMBO J., 20, 4253-4262.
-
(2001)
EMBO J.
, vol.20
, pp. 4253-4262
-
-
Kato, J.1
Katayama, T.2
-
11
-
-
0023201351
-
Comparison of dnaA nucleotide sequences of Escherichia coli, Salmonella typhimurium and Serratia marcescens
-
Skovgaard,O. and Hansen,F.G. (1987) Comparison of dnaA nucleotide sequences of Escherichia coli, Salmonella typhimurium and Serratia marcescens. J. Bacteriol., 169, 3976-3981.
-
(1987)
J. Bacteriol.
, vol.169
, pp. 3976-3981
-
-
Skovgaard, O.1
Hansen, F.G.2
-
12
-
-
0025052574
-
Structure of the dnaA region of Micrococcus luteus: Conservation and variations among eubacteria
-
Fujita,M.Q., Yoshikawa,H. and Ogasawara,N. (1990) Structure of the dnaA region of Micrococcus luteus: conservation and variations among eubacteria. Gene, 93, 73-78.
-
(1990)
Gene
, vol.93
, pp. 73-78
-
-
Fujita, M.Q.1
Yoshikawa, H.2
Ogasawara, N.3
-
13
-
-
0031591026
-
Escherichia coli DnaA protein: The replication initiator
-
Kaguni,J.M. (1997) Escherichia coli DnaA protein: the replication initiator. Mol. Cells, 7, 145-157.
-
(1997)
Mol. Cells
, vol.7
, pp. 145-157
-
-
Kaguni, J.M.1
-
14
-
-
0033634866
-
Structure and function of Cdc6/Cdc18: Implications for origin recognition and checkpoint control
-
Liu,J., Smith,C.L., DeRyckere,D., DeAngelis,K., Martin,G.S. and Berger,J.M. (2000) Structure and function of Cdc6/Cdc18: implications for origin recognition and checkpoint control. Mol. Cell, 6, 637-648.
-
(2000)
Mol. Cell
, vol.6
, pp. 637-648
-
-
Liu, J.1
Smith, C.L.2
DeRyckere, D.3
DeAngelis, K.4
Martin, G.S.5
Berger, J.M.6
-
15
-
-
0031565989
-
The Escherichia coli dnaA gene: Four functional domains
-
Sutton,M.D. and Kaguni,J.M. (1997) The Escherichia coli dnaA gene: four functional domains. J. Mol. Biol., 12, 546-561.
-
(1997)
J. Mol. Biol.
, vol.12
, pp. 546-561
-
-
Sutton, M.D.1
Kaguni, J.M.2
-
16
-
-
0032736348
-
Functional domains of DnaA proteins
-
Messer,W., Blaesing,F., Majka,J., Nardmann,J., Schaper,S., Schmidt,A., Seitx,H., Speck,C., Tungler,D., Wegrzyn,G., Weigel,C., Welzeck,M. and Zakrzewska-Czerwinska,J. (1999) Functional domains of DnaA proteins. Biochimie, 81, 819-825.
-
(1999)
Biochimie
, vol.81
, pp. 819-825
-
-
Messer, W.1
Blaesing, F.2
Majka, J.3
Nardmann, J.4
Schaper, S.5
Schmidt, A.6
Seitx, H.7
Speck, C.8
Tungler, D.9
Wegrzyn, G.10
Weigel, C.11
Welzeck, M.12
Zakrzewska-Czerwinska, J.13
-
17
-
-
0037119995
-
The structure of bacterial DnaA: Implications for general mechanisms underlying DNA replication initiation
-
Erzberger,J.P., Pirruccello,M.M. and Berger,J.M. (2002) The structure of bacterial DnaA: implications for general mechanisms underlying DNA replication initiation. EMBO J., 21, 4763-4773.
-
(2002)
EMBO J.
, vol.21
, pp. 4763-4773
-
-
Erzberger, J.P.1
Pirruccello, M.M.2
Berger, J.M.3
-
18
-
-
0024462061
-
In vivo studies of DnaA binding to the origin of replication of Escherichia coli
-
Samitt,C.E., Hansen,F.G., Miller,J.F. and Schaechter,M. (1989) In vivo studies of DnaA binding to the origin of replication of Escherichia coli. EMBO J., 8, 989-993.
-
(1989)
EMBO J.
, vol.8
, pp. 989-993
-
-
Samitt, C.E.1
Hansen, F.G.2
Miller, J.F.3
Schaechter, M.4
-
19
-
-
0028867701
-
Cell cycle-specific changes in nucleoprotein complexes at a chromosomal replication origin
-
Cassler,M.R., Grimwade,J.E. and Leonard,A.C. (1995) Cell cycle-specific changes in nucleoprotein complexes at a chromosomal replication origin. EMBO J., 14, 5833-5841.
-
(1995)
EMBO J.
, vol.14
, pp. 5833-5841
-
-
Cassler, M.R.1
Grimwade, J.E.2
Leonard, A.C.3
-
20
-
-
0029088758
-
Interaction of the initiator protein DnaA of Escherichia coli with its DNA target
-
Schaper,S. and Messer,W. (1995) Interaction of the initiator protein DnaA of Escherichia coli with its DNA target. J. Biol. Chem., 270, 17622-17626.
-
(1995)
J. Biol. Chem.
, vol.270
, pp. 17622-17626
-
-
Schaper, S.1
Messer, W.2
-
21
-
-
0023664708
-
In vitro assembly of a prepriming complex at the origin of the Escherichia coli chromosome
-
Funnell,B.E., Baker,T.A. and Kornberg,A. (1987) In vitro assembly of a prepriming complex at the origin of the Escherichia coli chromosome. J. Biol. Chem., 262, 10327-10334.
-
(1987)
J. Biol. Chem.
, vol.262
, pp. 10327-10334
-
-
Funnell, B.E.1
Baker, T.A.2
Kornberg, A.3
-
22
-
-
0036294232
-
Selenomethionine incorporation into a protein by cell-free synthesis
-
Kigawa,T., Yamaguchi-Nunokawa,E., Kodama,K., Matsuda,T., Yabuki,T., Matsuda,N., Ishitani,R., Nureki,O. and Yokoyama,S. (2002) Selenomethionine incorporation into a protein by cell-free synthesis. J. Struct. Funct. Genome, 2, 29-35.
-
(2002)
J. Struct. Funct. Genome
, vol.2
, pp. 29-35
-
-
Kigawa, T.1
Yamaguchi-Nunokawa, E.2
Kodama, K.3
Matsuda, T.4
Yabuki, T.5
Matsuda, N.6
Ishitani, R.7
Nureki, O.8
Yokoyama, S.9
-
23
-
-
0026095584
-
Determination of macromolecular structures from anomalous diffraction of synchrotron radiation
-
Hendrickson,W.A. (1991) Determination of macromolecular structures from anomalous diffraction of synchrotron radiation. Science, 254, 51-58.
-
(1991)
Science
, vol.254
, pp. 51-58
-
-
Hendrickson, W.A.1
-
24
-
-
0031059866
-
Processing of X-ray diffraction data collected in oscillation mode
-
Otwinowski,Z. and Minor,W. (1997) Processing of X-ray diffraction data collected in oscillation mode. Methods Enzymol., 276, 307-326.
-
(1997)
Methods Enzymol.
, vol.276
, pp. 307-326
-
-
Otwinowski, Z.1
Minor, W.2
-
25
-
-
19944409045
-
The design and implementation of SnB v2.0
-
Weeks,C.M. and Miller,R. (1999) The design and implementation of SnB v2.0. J. Appl. Crystallogr., 32, 120-124.
-
(1999)
J. Appl. Crystallogr.
, vol.32
, pp. 120-124
-
-
Weeks, C.M.1
Miller, R.2
-
26
-
-
0031058188
-
Maximum-likelihood heavy-atom parameter refinement for multiple isomorphous replacement and multiwavelength anomalous diffraction methods
-
La Fortelle,E. and Bricogne,G. (1997) Maximum-likelihood heavy-atom parameter refinement for multiple isomorphous replacement and multiwavelength anomalous diffraction methods. Methods Enzymol., 276, 472-494.
-
(1997)
Methods Enzymol.
, vol.276
, pp. 472-494
-
-
La Fortelle, E.1
Bricogne, G.2
-
27
-
-
0028103275
-
The CCP4 suite: Programs for protein crystallography
-
Collaborative Computational Project Number 4
-
Collaborative Computational Project Number 4 (1994) The CCP4 suite: programs for protein crystallography. Acta Crystallogr. D, 50, 760-763.
-
(1994)
Acta Crystallogr. D
, vol.50
, pp. 760-763
-
-
-
28
-
-
84889120137
-
Improved methods for building protein models in electron density maps and the location of errors in these models
-
Jones,T.A., Zou,J.-Y., Cowan,S.W. and Kjeldgaard,M. (1991) Improved methods for building protein models in electron density maps and the location of errors in these models. Acta Crystallogr. A, 47, 110-119.
-
(1991)
Acta Crystallogr. A
, vol.47
, pp. 110-119
-
-
Jones, T.A.1
Zou, J.-Y.2
Cowan, S.W.3
Kjeldgaard, M.4
-
29
-
-
3543012707
-
Crystallography & NMR system: A new software suite for macro molecular structure determination
-
Brünger,A.T., Adams,P.D., Clore,G.M., DeLano,W.L., Gros,P., Grosse-Kunstleve,R.W., Jiang,J.S., Kuszewski,J., Nilges,M., Pannu,N.S. et al. (1998) Crystallography & NMR system: a new software suite for macro molecular structure determination. Acta Crystallogr. D, 54, 905-921.
-
(1998)
Acta Crystallogr. D
, vol.54
, pp. 905-921
-
-
Brünger, A.T.1
Adams, P.D.2
Clore, G.M.3
DeLano, W.L.4
Gros, P.5
Grosse-Kunstleve, R.W.6
Jiang, J.S.7
Kuszewski, J.8
Nilges, M.9
Pannu, N.S.10
-
31
-
-
0036433286
-
Determination of the secondary structure in solution of the Escherichia coli DnaA DNA-binding domain
-
Obita,T., Iwura,T., Su'etsugu,M., Yoshida,Y., Tanaka,Y., Katayama,T., Ueda,T. and Imoto,T. (2002) Determination of the secondary structure in solution of the Escherichia coli DnaA DNA-binding domain. Biochem. Biophys. Res. Commun., 299, 42-48.
-
(2002)
Biochem. Biophys. Res. Commun.
, vol.299
, pp. 42-48
-
-
Obita, T.1
Iwura, T.2
Su'etsugu, M.3
Yoshida, Y.4
Tanaka, Y.5
Katayama, T.6
Ueda, T.7
Imoto, T.8
-
32
-
-
0032969563
-
AAA+: A class of chaperone-like ATPases associated with the assembly, operation and disassembly of protein complexes
-
Neuwald,A.F., Aravid,L., Spouge,J.L. and Koonin,E.V. (1999) AAA+: a class of chaperone-like ATPases associated with the assembly, operation and disassembly of protein complexes. Genome Res., 9, 27-43.
-
(1999)
Genome Res.
, vol.9
, pp. 27-43
-
-
Neuwald, A.F.1
Aravid, L.2
Spouge, J.L.3
Koonin, E.V.4
-
33
-
-
0024294634
-
Crystal structure of trp repressor/operator complex at atomic resolution
-
Otwinowski,Z., Schevitz,R.W., Zhang,R.G., Lawson,C.L., Joachimiak,A., Marmorstein,R.Q., Luisi,B.F. and Sigler,P.B. (1988) Crystal structure of trp repressor/operator complex at atomic resolution. Nature, 335, 321-329.
-
(1988)
Nature
, vol.335
, pp. 321-329
-
-
Otwinowski, Z.1
Schevitz, R.W.2
Zhang, R.G.3
Lawson, C.L.4
Joachimiak, A.5
Marmorstein, R.Q.6
Luisi, B.F.7
Sigler, P.B.8
-
34
-
-
0036203066
-
Structure of the bacterial RNA polymerase promoter specificity sigma subunit
-
Campbell,E.A., Muzzin,O., Chlenov,M., Sun,J.L., Olson,C.A., Weinman,O., Trester-Zedlitz,M.L. and Darst,S.A. (2002) Structure of the bacterial RNA polymerase promoter specificity sigma subunit. Mol. Cell, 9, 527-539.
-
(2002)
Mol. Cell
, vol.9
, pp. 527-539
-
-
Campbell, E.A.1
Muzzin, O.2
Chlenov, M.3
Sun, J.L.4
Olson, C.A.5
Weinman, O.6
Trester-Zedlitz, M.L.7
Darst, S.A.8
-
35
-
-
0035803581
-
Crystal structure of the CENP-B protein-DNA complex: The DNA-binding domains of CENP-B induce kinks in the CENP-B box DNA
-
Tanaka,Y., Nureki,O., Kurumizaka,H., Fukai,S., Kawaguchi,S., Ikuta,M., Iwahara,J., Okazaki,T. and Yokoyama,S. (2001) Crystal structure of the CENP-B protein-DNA complex: the DNA-binding domains of CENP-B induce kinks in the CENP-B box DNA. EMBO J., 20, 6612-6618.
-
(2001)
EMBO J.
, vol.20
, pp. 6612-6618
-
-
Tanaka, Y.1
Nureki, O.2
Kurumizaka, H.3
Fukai, S.4
Kawaguchi, S.5
Ikuta, M.6
Iwahara, J.7
Okazaki, T.8
Yokoyama, S.9
-
36
-
-
0030854615
-
From footprint to toeprint: A close-up of the DnaA box, the binding site for the bacterial initiator protein DnaA
-
Speck,C., Weigel,C. and Messer,W. (1997) From footprint to toeprint: a close-up of the DnaA box, the binding site for the bacterial initiator protein DnaA. Nucleic Acids Res., 25, 3242-3247.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 3242-3247
-
-
Speck, C.1
Weigel, C.2
Messer, W.3
-
37
-
-
0030823757
-
Threonine 435 of Escherichia coli DnaA protein confers sequence-specific DNA binding activity
-
Sutton,M.D. and Kaguni,J.M. (1997) Threonine 435 of Escherichia coli DnaA protein confers sequence-specific DNA binding activity. J. Biol. Chem. 272, 23017-23024.
-
(1997)
J. Biol. Chem.
, vol.272
, pp. 23017-23024
-
-
Sutton, M.D.1
Kaguni, J.M.2
-
38
-
-
0034016324
-
Analysis of the DNA binding domain of Escherichia coli DnaA protein
-
Blaesing,F., Weigel,C., Welzeck,M. and Messer,W. (2000) Analysis of the DNA binding domain of Escherichia coli DnaA protein. Mol. Microbiol., 36, 557-569.
-
(2000)
Mol. Microbiol.
, vol.36
, pp. 557-569
-
-
Blaesing, F.1
Weigel, C.2
Welzeck, M.3
Messer, W.4
-
39
-
-
0030728450
-
DnaA protein binding to individual DnaA boxes in the Escherichia coli replication origin, oriC
-
Weigel,C., Schmidt,A., Ruckert,B., Lurz,R. and Messer,W. (1997) DnaA protein binding to individual DnaA boxes in the Escherichia coli replication origin, oriC. EMBO J., 16, 6574-6583.
-
(1997)
EMBO J.
, vol.16
, pp. 6574-6583
-
-
Weigel, C.1
Schmidt, A.2
Ruckert, B.3
Lurz, R.4
Messer, W.5
-
40
-
-
0035794113
-
Sequence recognition, cooperative interaction and dimerization of the initiator protein DnaA of Streptomyces
-
Majka,J., Zakrzewska-Czerwinska,J. and Messer,W. (2001) Sequence recognition, cooperative interaction and dimerization of the initiator protein DnaA of Streptomyces. J. Biol. Chem., 276, 6243-6252.
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 6243-6252
-
-
Majka, J.1
Zakrzewska-Czerwinska, J.2
Messer, W.3
-
41
-
-
0030003443
-
A novel DnaA protein-binding site at 94.7 min on the Escherichia coli chromosome
-
Kitagawa,R., Mitsuki,H., Okazaki,T. and Ogawa,T. (1996) A novel DnaA protein-binding site at 94.7 min on the Escherichia coli chromosome. Mol. Microbiol., 19, 1137-1147.
-
(1996)
Mol. Microbiol.
, vol.19
, pp. 1137-1147
-
-
Kitagawa, R.1
Mitsuki, H.2
Okazaki, T.3
Ogawa, T.4
-
42
-
-
0032190630
-
Negative control of replication initiation by a novel chromosomal locus exhibiting exceptional affinity for Escherichia coli DnaA protein
-
Kitagawa,R., Ozaki,T., Moriya,S. and Ogawa,T. (1998) Negative control of replication initiation by a novel chromosomal locus exhibiting exceptional affinity for Escherichia coli DnaA protein. Genes Dev., 12, 3032-3043.
-
(1998)
Genes Dev.
, vol.12
, pp. 3032-3043
-
-
Kitagawa, R.1
Ozaki, T.2
Moriya, S.3
Ogawa, T.4
-
43
-
-
0024058085
-
Definition of generalized helicoidal parameters and an axis of curvature for irregular nucleic acids
-
Lavery,R. and Skelenar,H. (1988) Definition of generalized helicoidal parameters and an axis of curvature for irregular nucleic acids. J. Biomol. Struct. Dyn., 6, 63-91.
-
(1988)
J. Biomol. Struct. Dyn.
, vol.6
, pp. 63-91
-
-
Lavery, R.1
Skelenar, H.2
|