메뉴 건너뛰기




Volumn 13, Issue 7, 1996, Pages 970-977

Phylogenetic analysis of carbamoylphosphate synthetase genes: Complex evolutionary history includes an internal duplication within a gene which can root the tree of life

Author keywords

arginine biosynthesis; carbamoylphosphate synthetase; Neisseria gonorrhoeae; phylogenetic trees; pyrimidine biosynthesis; rooted trees; Sulfolobus solfataricus P2; tree of life

Indexed keywords

CARBAMATE KINASE;

EID: 0029815789     PISSN: 07374038     EISSN: None     Source Type: Journal    
DOI: 10.1093/oxfordjournals.molbev.a025665     Document Type: Article
Times cited : (65)

References (41)
  • 2
    • 0019327960 scopus 로고
    • Glutamine- and N-acetylglutamate-dependent carbamoyl phosphate synthetase in elasmobranchs
    • ANDERSON, P. M. 1980. Glutamine- and N-acetylglutamate-dependent carbamoyl phosphate synthetase in elasmobranchs. Science 208:291-293.
    • (1980) Science , vol.208 , pp. 291-293
    • Anderson, P.M.1
  • 3
    • 85035177678 scopus 로고
    • Isolation of Lactobacilli naturally deficient in carbamyl phosphate biosynthesis
    • September 12-14, 1994. Paris, France
    • BRINGEL, F. 1994. Isolation of Lactobacilli naturally deficient in carbamyl phosphate biosynthesis. XIVth International Arginine Symposium, September 12-14, 1994. Paris, France.
    • (1994) XIVth International Arginine Symposium
    • Bringel, F.1
  • 4
    • 0028941917 scopus 로고
    • Root of the universal tree of life based on ancient aminoacyl-tRNA synthetase gene duplications
    • BROWN, J. R., and W. F. DOOLITTLE. 1995. Root of the universal tree of life based on ancient aminoacyl-tRNA synthetase gene duplications. Proc. Natl. Acad. Sci. USA 92: 2441-2445.
    • (1995) Proc. Natl. Acad. Sci. USA , vol.92 , pp. 2441-2445
    • Brown, J.R.1    Doolittle, W.F.2
  • 5
    • 0029591399 scopus 로고
    • The structural gene for carbamoyl phosphate synthetase from the protozoan parasite Babesia bovis
    • CHANSIRI, K., and A. S. BAGNARA. 1995. The structural gene for carbamoyl phosphate synthetase from the protozoan parasite Babesia bovis. Mol. Biochem. Parasitol. 74:239-243.
    • (1995) Mol. Biochem. Parasitol. , vol.74 , pp. 239-243
    • Chansiri, K.1    Bagnara, A.S.2
  • 6
    • 0028202438 scopus 로고
    • Evolution of translational elongation factor (EF) sequences: Reliability of global phylogenies inferred from EF-1 alpha (Tu) and EF-2(G) proteins
    • CRETI, R., E. CECCARALLI, M. BOCCHETTA, A. M. SANANGELANTONI, O. TIBONI, P. PALM, and P. CAMMARANO. 1994. Evolution of translational elongation factor (EF) sequences: reliability of global phylogenies inferred from EF-1 alpha (Tu) and EF-2(G) proteins. Proc. Natl. Acad. Sci. USA 91: 3255-3259.
    • (1994) Proc. Natl. Acad. Sci. USA , vol.91 , pp. 3255-3259
    • Creti, R.1    Ceccaralli, E.2    Bocchetta, M.3    Sanangelantoni, A.M.4    Tiboni, O.5    Palm, P.6    Cammarano, P.7
  • 7
    • 0027564279 scopus 로고
    • The evolutionary history of the first three enzymes in pyrimidine biosynthesis
    • DAVIDSON, J. N., K. C. CHEN, R. S. JAMISON, L. A. MUSMANNO, and C. B. KERN. 1993. The evolutionary history of the first three enzymes in pyrimidine biosynthesis. Bioessays 15:157-164.
    • (1993) Bioessays , vol.15 , pp. 157-164
    • Davidson, J.N.1    Chen, K.C.2    Jamison, R.S.3    Musmanno, L.A.4    Kern, C.B.5
  • 8
    • 0022531131 scopus 로고
    • Compartmental and regulatory mechanisms in the arginine pathways of Neurospora crassa and Saccharomyces cerevisiae
    • DAVIS, R. H. 1986. Compartmental and regulatory mechanisms in the arginine pathways of Neurospora crassa and Saccharomyces cerevisiae. Microbiol. Rev. 50:280-313.
    • (1986) Microbiol. Rev. , vol.50 , pp. 280-313
    • Davis, R.H.1
  • 9
    • 0018851682 scopus 로고
    • Carbarnoylphosphate synthetase A of Neurospora crassa
    • DAVIS, R. H., J. L. RISTOW, and B. A. HANSON. 1980. Carbarnoylphosphate synthetase A of Neurospora crassa. J. Bacteriol. 141:144-155.
    • (1980) J. Bacteriol. , vol.141 , pp. 144-155
    • Davis, R.H.1    Ristow, J.L.2    Hanson, B.A.3
  • 10
    • 0022796575 scopus 로고
    • Organization of the pathway of de novo pyrimidine nucleotide biosynthesis in Pea (Pisum sativum L. cv progress no. 9) leaves
    • DOREMUS, H. D. 1986. Organization of the pathway of de novo pyrimidine nucleotide biosynthesis in Pea (Pisum sativum L. cv progress no. 9) leaves. Arch. Biochem. Biophys. 250:112-119.
    • (1986) Arch. Biochem. Biophys. , vol.250 , pp. 112-119
    • Doremus, H.D.1
  • 12
    • 0028587356 scopus 로고
    • Characterization of the carbamoyl phosphate synthetase gene from Plasmodium falciparum
    • FLORES, M. V. C., W. J. O'SULLIVAN, and T. S. STEWART. 1994. Characterization of the carbamoyl phosphate synthetase gene from Plasmodium falciparum. Mol. Biochem. Parasitol. 68:315-318.
    • (1994) Mol. Biochem. Parasitol. , vol.68 , pp. 315-318
    • Flores, M.V.C.1    O'Sullivan, W.J.2    Stewart, T.S.3
  • 13
    • 0027056143 scopus 로고
    • The nature of the last universal ancestor and the root of the tree of life, still open questions
    • FORTERRE, P., N. BENACHENHOU-LAHFA, F. CONFALONIERI, M. DUGUET, C. ELIE, and B. LABEDAN. 1993. The nature of the last universal ancestor and the root of the tree of life, still open questions. Biosystems 28:15-32.
    • (1993) Biosystems , vol.28 , pp. 15-32
    • Forterre, P.1    Benachenhou-Lahfa, N.2    Confalonieri, F.3    Duguet, M.4    Elie, C.5    Labedan, B.6
  • 14
    • 0024324210 scopus 로고
    • Identification of cysteine residues in carbamoyl-phosphate synthase I with reactivity enhanced by N-acetyl-L-glutamate
    • GESCHWILL, K., and L. LUMPER. 1989. Identification of cysteine residues in carbamoyl-phosphate synthase I with reactivity enhanced by N-acetyl-L-glutamate. Biochem. J. 260:573-576.
    • (1989) Biochem. J. , vol.260 , pp. 573-576
    • Geschwill, K.1    Lumper, L.2
  • 16
    • 0028338716 scopus 로고
    • Heat shock stabilizes T3-induced urea cycle enzyme gene expression in the liver of Rana catesbeiana tadpoles
    • HELBING, C., and B. G. ATKINSON. 1994. Heat shock stabilizes T3-induced urea cycle enzyme gene expression in the liver of Rana catesbeiana tadpoles. J. Biol. Chem. 269:11743-11750.
    • (1994) J. Biol. Chem. , vol.269 , pp. 11743-11750
    • Helbing, C.1    Atkinson, B.G.2
  • 17
    • 0027738868 scopus 로고
    • Horizontal transfer of ATPase genes - The tree of life becomes a net of life
    • HILARIO, E., and J. P. GOGARTEN. 1993. Horizontal transfer of ATPase genes - the tree of life becomes a net of life. Biosystems 31:111-119.
    • (1993) Biosystems , vol.31 , pp. 111-119
    • Hilario, E.1    Gogarten, J.P.2
  • 18
    • 0027996538 scopus 로고
    • Carbamyl phosphate synthetase III, an evolutionary intermediate in the transition between glutamine-dependent and ammonia-dependent carbamyl phosphate synthetases
    • HONG, J., W. L. SALO, C. J. LUSTY, and P. M. ANDERSON. 1994. Carbamyl phosphate synthetase III, an evolutionary intermediate in the transition between glutamine-dependent and ammonia-dependent carbamyl phosphate synthetases. J. Mol. Biol. 243:131-140.
    • (1994) J. Mol. Biol. , vol.243 , pp. 131-140
    • Hong, J.1    Salo, W.L.2    Lusty, C.J.3    Anderson, P.M.4
  • 19
    • 0024358140 scopus 로고
    • Evolutionary relationship of archaebacteria, eubacteria, and eukaryotes inferred from phylogenetic trees of duplicated genes
    • IWABE, N., K. KUMA, M. HASEGAWA, S. OSAWA, and T. MIYATA. 1989. Evolutionary relationship of archaebacteria, eubacteria, and eukaryotes inferred from phylogenetic trees of duplicated genes. Proc. Natl. Acad. Sci. USA 86:9355-9359.
    • (1989) Proc. Natl. Acad. Sci. USA , vol.86 , pp. 9355-9359
    • Iwabe, N.1    Kuma, K.2    Hasegawa, M.3    Osawa, S.4    Miyata, T.5
  • 20
    • 0023711447 scopus 로고
    • Nucleotide sequence of the carA gene and regulation of the carAB operon in Salmonella typhimurium
    • KILSTRUP, M., C.-D. LU, A. T. ABDELAL, and J. NEUHARD. 1988. Nucleotide sequence of the carA gene and regulation of the carAB operon in Salmonella typhimurium. J. Biochem. 176:421-429.
    • (1988) J. Biochem. , vol.176 , pp. 421-429
    • Kilstrup, M.1    Lu, C.-D.2    Abdelal, A.T.3    Neuhard, J.4
  • 21
    • 0019296687 scopus 로고
    • A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
    • KIMURA, M. 1980. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 16:111-120.
    • (1980) J. Mol. Evol. , vol.16 , pp. 111-120
    • Kimura, M.1
  • 22
    • 0028354124 scopus 로고
    • Structure and regulation of the carAB operon in Pseudomonas aeruginosa and Pseudomonas stutzeri: No untranslated region exists
    • KWON, D.-H., C.-D. LU, D. A. WALTHALL, T. M. BROWN, J. E. HOUGHTON, and A. T. ABDELAL. 1994. Structure and regulation of the carAB operon in Pseudomonas aeruginosa and Pseudomonas stutzeri: no untranslated region exists. J. Bacteriol. 176:2532-2542.
    • (1994) J. Bacteriol. , vol.176 , pp. 2532-2542
    • Kwon, D.-H.1    Lu, C.-D.2    Walthall, D.A.3    Brown, T.M.4    Houghton, J.E.5    Abdelal, A.T.6
  • 23
    • 0013791014 scopus 로고
    • The biosynthesis of carbamoylphosphate in Saccharomyces cerevisiae
    • LACROUTE, F., A. PIERARD, M. GRENSON, and J. M. WIAME. 1965. The biosynthesis of carbamoylphosphate in Saccharomyces cerevisiae. J. Gen. Microbiol. 40:127-142.
    • (1965) J. Gen. Microbiol. , vol.40 , pp. 127-142
    • Lacroute, F.1    Pierard, A.2    Grenson, M.3    Wiame, J.M.4
  • 24
    • 0039861672 scopus 로고
    • Eocytes: A new ribosome structure indicates a kingdom with a close relationship to eukaryotes
    • LAKE, J. A., E. HENDERSON, M. OAKES, and M. W. CLARK. 1984. Eocytes: a new ribosome structure indicates a kingdom with a close relationship to eukaryotes. Proc. Natl. Acad. Sci. USA 81:3786-3790.
    • (1984) Proc. Natl. Acad. Sci. USA , vol.81 , pp. 3786-3790
    • Lake, J.A.1    Henderson, E.2    Oakes, M.3    Clark, M.W.4
  • 25
    • 0029029141 scopus 로고
    • Organization of carbamoyl-phosphate synthase genes in Neisseria gonorrhoeas includes a large, variable intergenic sequence which is also present in other Neisseria species
    • LAWSON, F. S., F. M. BILLOWES, and J. R. DILLON. 1995. Organization of carbamoyl-phosphate synthase genes in Neisseria gonorrhoeas includes a large, variable intergenic sequence which is also present in other Neisseria species. Microbiology 141:1183-1191.
    • (1995) Microbiology , vol.141 , pp. 1183-1191
    • Lawson, F.S.1    Billowes, F.M.2    Dillon, J.R.3
  • 26
    • 0029000244 scopus 로고
    • Ammonia-dependent synthesis and metabolic channeling of carbamoyl phosphate in the hyperthermophilic archaeon Pyrococcus furiosus
    • LEGRAIN, C., M. DEMAREZ, N. GLANSDORFF, and A. PIERARD. 1995. Ammonia-dependent synthesis and metabolic channeling of carbamoyl phosphate in the hyperthermophilic archaeon Pyrococcus furiosus. Microbiology 141:1093-1099.
    • (1995) Microbiology , vol.141 , pp. 1093-1099
    • Legrain, C.1    Demarez, M.2    Glansdorff, N.3    Pierard, A.4
  • 27
    • 84986411746 scopus 로고
    • Carbamoyl-phosphate synthetase I from frog liver
    • S. GRISOLIA, R. BAGUENA, and F. MAYOR, eds. John Wiley and Sons, New York
    • MARSHALL, M. 1976. Carbamoyl-phosphate synthetase I from frog liver. Pp. 133-142 in S. GRISOLIA, R. BAGUENA, and F. MAYOR, eds. The urea cycle. John Wiley and Sons, New York.
    • (1976) The Urea Cycle , pp. 133-142
    • Marshall, M.1
  • 28
    • 0025858242 scopus 로고
    • Role of four conserved histidine residues in the amidotransferase domain of carbamoyl phosphate synthetase
    • MIRAN, S. G., S. H. CHANG, and F. M. RAUSHEL. 1991. Role of four conserved histidine residues in the amidotransferase domain of carbamoyl phosphate synthetase. Biochemistry 30:7901-7907.
    • (1991) Biochemistry , vol.30 , pp. 7901-7907
    • Miran, S.G.1    Chang, S.H.2    Raushel, F.M.3
  • 29
    • 1842863125 scopus 로고
    • The gene coding for carbamoylphosphate synthetase I was formed by fusion of an ancestral glutaminase gene and a synthetase gene
    • NYUNOYA, H., K. E. BROGLIE, and C. J. LUSTY. 1985. The gene coding for carbamoylphosphate synthetase I was formed by fusion of an ancestral glutaminase gene and a synthetase gene. Proc. Natl. Acad. Sci. USA 82:2244-2246.
    • (1985) Proc. Natl. Acad. Sci. USA , vol.82 , pp. 2244-2246
    • Nyunoya, H.1    Broglie, K.E.2    Lusty, C.J.3
  • 30
    • 0020803887 scopus 로고
    • The carB gene of Escherichia coli: A duplicated gene coding for the large subunit of carbamoyl-phosphate synthetase
    • NYUNOYA, H., and C. J. LUSTY. 1983. The carB gene of Escherichia coli: a duplicated gene coding for the large subunit of carbamoyl-phosphate synthetase. Proc. Natl. Acad. Sci. USA 80:4629-4633.
    • (1983) Proc. Natl. Acad. Sci. USA , vol.80 , pp. 4629-4633
    • Nyunoya, H.1    Lusty, C.J.2
  • 31
    • 0028321373 scopus 로고
    • Further evidence for the non-clonal population structure of Neisseria gonorrhoeas: Extensive genetic diversity within isolates of the same electrophoretic type
    • O'ROURKE, M., and B. G. SPRATT. 1994. Further evidence for the non-clonal population structure of Neisseria gonorrhoeas: extensive genetic diversity within isolates of the same electrophoretic type. Microbiology 140:1285-1290.
    • (1994) Microbiology , vol.140 , pp. 1285-1290
    • O'Rourke, M.1    Spratt, B.G.2
  • 32
    • 0018345520 scopus 로고
    • Characterisation of pyrimidine-repressible and arginine-repressible carbamyl phosphate synthetases from Bacillus subtilis
    • PAULUS, T. J., and R. L. SWITZER. 1979. Characterisation of pyrimidine-repressible and arginine-repressible carbamyl phosphate synthetases from Bacillus subtilis. J. Bacteriol. 137:82-91.
    • (1979) J. Bacteriol. , vol.137 , pp. 82-91
    • Paulus, T.J.1    Switzer, R.L.2
  • 33
    • 0024551459 scopus 로고
    • Cloning and organization of seven arginine biosynthesis genes from Neisseria gonorrhoeae
    • PICARD, F. J., and J. R. DILLON. 1989. Cloning and organization of seven arginine biosynthesis genes from Neisseria gonorrhoeae. J. Bacteriol. 171:1644-1651.
    • (1989) J. Bacteriol. , vol.171 , pp. 1644-1651
    • Picard, F.J.1    Dillon, J.R.2
  • 34
    • 0025349207 scopus 로고
    • Dissection of the functional domains of Escherichia coli carbamoyl phosphate synthetase by site-directed mutagenesis
    • POST, L. E., D. J. POST, and F. M. RAUSHEL. 1990. Dissection of the functional domains of Escherichia coli carbamoyl phosphate synthetase by site-directed mutagenesis. J. Biol. Chem. 265:7742-7747.
    • (1990) J. Biol. Chem. , vol.265 , pp. 7742-7747
    • Post, L.E.1    Post, D.J.2    Raushel, F.M.3
  • 35
    • 0028337282 scopus 로고
    • Molecular analysis of the Trichosporin cutaneum DSM 70698 argA gene and its use for DNA-mediated transformations
    • REISER, J., V. GLUMOFF, U. OCHSNER, and A. FIECHTER. 1994. Molecular analysis of the Trichosporin cutaneum DSM 70698 argA gene and its use for DNA-mediated transformations. J. Bacteriol. 176:3021-3032.
    • (1994) J. Bacteriol. , vol.176 , pp. 3021-3032
    • Reiser, J.1    Glumoff, V.2    Ochsner, U.3    Fiechter, A.4
  • 36
    • 0022977619 scopus 로고
    • Catalytic domains of carbamyl phosphate synthetase. Glutamine-hydrolyzing site of Escherichia coli carbamyl phosphate
    • RUBINO, S. D., H. NYUNOYA, and C. J. LUSTY. 1986. Catalytic domains of carbamyl phosphate synthetase. Glutamine-hydrolyzing site of Escherichia coli carbamyl phosphate. J. Biol. Chem. 261:11320-11327.
    • (1986) J. Biol. Chem. , vol.261 , pp. 11320-11327
    • Rubino, S.D.1    Nyunoya, H.2    Lusty, C.J.3
  • 37
    • 0027522463 scopus 로고
    • Molecular studies on an ancient gene encoding for carbamoyl-phosphate synthetase
    • SCHOFIELD, J. P. 1993. Molecular studies on an ancient gene encoding for carbamoyl-phosphate synthetase. Clin. Sci. 84: 119-128.
    • (1993) Clin. Sci. , vol.84 , pp. 119-128
    • Schofield, J.P.1
  • 39
    • 0025367324 scopus 로고
    • Mammalian carbamyl phosphate synthetase (CPS). cDNA sequence and evolution of the CPS domain of the Syrian hamster multifunctional protein CAD
    • SIMMER, J. P., R. E. KELLY, A. G. RINKER JR., J. L. SCULLY, and D. R. EVANS. 1990. Mammalian carbamyl phosphate synthetase (CPS). cDNA sequence and evolution of the CPS domain of the Syrian hamster multifunctional protein CAD. J. Biol. Chem. 265:10395-10402.
    • (1990) J. Biol. Chem. , vol.265 , pp. 10395-10402
    • Simmer, J.P.1    Kelly, R.E.2    Rinker Jr., A.G.3    Scully, J.L.4    Evans, D.R.5
  • 40
  • 41
    • 0022425313 scopus 로고
    • Nucleotide sequence of the yeast gene CPA1 encoding the small subunit of arginine-pathway carbamoylphosphate synthetase. Homology of deduced amino acid sequence to other glutamine amidotransferases
    • WERNER, M., A. FELLER, and A. PIÉRARD. 1985. Nucleotide sequence of the yeast gene CPA1 encoding the small subunit of arginine-pathway carbamoylphosphate synthetase. Homology of deduced amino acid sequence to other glutamine amidotransferases. Eur. J. Biochem. 146:371-381.
    • (1985) Eur. J. Biochem. , vol.146 , pp. 371-381
    • Werner, M.1    Feller, A.2    Piérard, A.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.