메뉴 건너뛰기




Volumn 36, Issue 5, 2004, Pages 492-496

Gene regulatory network growth by duplication

Author keywords

[No Author keywords available]

Indexed keywords

TRANSCRIPTION FACTOR;

EID: 2442537233     PISSN: 10614036     EISSN: None     Source Type: Journal    
DOI: 10.1038/ng1340     Document Type: Article
Times cited : (433)

References (30)
  • 1
    • 0037174671 scopus 로고    scopus 로고
    • Transcriptional regulatory networks in Saccharomyces cerevisiae
    • Lee, T.I. et al. Transcriptional regulatory networks in Saccharomyces cerevisiae. Science 298, 799-804 (2002).
    • (2002) Science , vol.298 , pp. 799-804
    • Lee, T.I.1
  • 2
    • 0036578795 scopus 로고    scopus 로고
    • Network motifs in the transcriptional regulation network of Escherichia coli
    • Shen-Orr, S.S., Milo, R., Mangan, S. & Alon, J. Network motifs in the transcriptional regulation network of Escherichia coli. Nat. Genet. 31, 64-68 (2002).
    • (2002) Nat. Genet. , vol.31 , pp. 64-68
    • Shen-Orr, S.S.1    Milo, R.2    Mangan, S.3    Alon, J.4
  • 3
    • 0036578654 scopus 로고    scopus 로고
    • Topological and causal structure of the yeast transcriptional regulatory network
    • Guelzim, N., Bottani, S., Bourgine, P. & Kepes, F. Topological and causal structure of the yeast transcriptional regulatory network. Nat. Genet. 31, 60-63 (2002).
    • (2002) Nat. Genet. , vol.31 , pp. 60-63
    • Guelzim, N.1    Bottani, S.2    Bourgine, P.3    Kepes, F.4
  • 5
    • 0032424307 scopus 로고    scopus 로고
    • Structural assignments to the Mycoplasma genitalium proteins show extensive gene duplications and domain rearrangements
    • Teichmann, S.A., Park, J. & Chothia, C. Structural assignments to the Mycoplasma genitalium proteins show extensive gene duplications and domain rearrangements. Proc. Natl. Acad. Sci. USA 95, 14658-14663 (1998).
    • (1998) Proc. Natl. Acad. Sci. USA , vol.95 , pp. 14658-14663
    • Teichmann, S.A.1    Park, J.2    Chothia, C.3
  • 6
    • 0035798406 scopus 로고    scopus 로고
    • Assignment of homology to genome sequences using a library of hidden Markov models that represent all proteins of known structure
    • Gough, J., Karplus, K., Hughey, R. & Chothia, C. Assignment of homology to genome sequences using a library of hidden Markov models that represent all proteins of known structure. J. Mol. Biol. 313, 903-919 (2001).
    • (2001) J. Mol. Biol. , vol.313 , pp. 903-919
    • Gough, J.1    Karplus, K.2    Hughey, R.3    Chothia, C.4
  • 7
    • 0035162782 scopus 로고    scopus 로고
    • RegulonDB (version 3.2): Transcriptional regulation and operon organization in Escherichia coli K-12
    • Salgado, H. et al. RegulonDB (version 3.2): transcriptional regulation and operon organization in Escherichia coli K-12. Nucleic Acids Res. 29, 72-74 (2001).
    • (2001) Nucleic Acids Res. , vol.29 , pp. 72-74
    • Salgado, H.1
  • 8
    • 0034634395 scopus 로고    scopus 로고
    • The evolutionary fate and consequences of duplicate genes
    • Lynch, M. & Conery, J.S. The evolutionary fate and consequences of duplicate genes. Science 290, 1151-1155 (2000)
    • (2000) Science , vol.290 , pp. 1151-1155
    • Lynch, M.1    Conery, J.S.2
  • 9
    • 0028206995 scopus 로고
    • Evolution of gene networks by gene duplications: A mathematical model and its implications on genome organization
    • Wagner, A. Evolution of gene networks by gene duplications: a mathematical model and its implications on genome organization. Proc. Natl. Acad. Sci. USA 91, 4387-4391 (1994).
    • (1994) Proc. Natl. Acad. Sci. USA , vol.91 , pp. 4387-4391
    • Wagner, A.1
  • 10
    • 0036856356 scopus 로고    scopus 로고
    • A duplication growth model of gene expression networks
    • Bhan, A., Galas, D.J. & Dewey, T.G. A duplication growth model of gene expression networks. Bioinformatics 18, 1486-1493 (2002).
    • (2002) Bioinformatics , vol.18 , pp. 1486-1493
    • Bhan, A.1    Galas, D.J.2    Dewey, T.G.3
  • 13
    • 0036087169 scopus 로고    scopus 로고
    • SUPERFAMILY: HMMs representing all proteins of known structure. SCOP sequence searches, alignments and genome assignments
    • Gough, J. & Chothia, C. SUPERFAMILY: HMMs representing all proteins of known structure. SCOP sequence searches, alignments and genome assignments. Nucleic Acids Res. 30, 268-272 (2002).
    • (2002) Nucleic Acids Res. , vol.30 , pp. 268-272
    • Gough, J.1    Chothia, C.2
  • 14
    • 0036796379 scopus 로고    scopus 로고
    • A comparison of profile hidden Markov model procedures for remote homology detection
    • Madera, M. & Gough, J. A comparison of profile hidden Markov model procedures for remote homology detection. Nucleic Acids Res. 30, 4321-4328 (2002).
    • (2002) Nucleic Acids Res. , vol.30 , pp. 4321-4328
    • Madera, M.1    Gough, J.2
  • 15
    • 0041828241 scopus 로고    scopus 로고
    • Scaling laws in the functional content of genomes
    • van Nimwegen, E. Scaling laws in the functional content of genomes. Trends Genet. 19, 479-484 (2003)
    • (2003) Trends Genet. , vol.19 , pp. 479-484
    • Van Nimwegen, E.1
  • 16
    • 0036180002 scopus 로고    scopus 로고
    • The evolution of DNA regulatory regions for proteo-gamma bacteria by interspecies comparison
    • Rajewsky, N., Socci, N.D., Zaptocky, M. & Siggia, E.D. The evolution of DNA regulatory regions for proteo-gamma bacteria by interspecies comparison. Genome Res. 12, 298-308 (2002).
    • (2002) Genome Res. , vol.12 , pp. 298-308
    • Rajewsky, N.1    Socci, N.D.2    Zaptocky, M.3    Siggia, E.D.4
  • 17
    • 0037440734 scopus 로고    scopus 로고
    • Evolution of transcription factors and the gene regulatory network in E. coli
    • Madan Babu, M. & Teichmann, S.A. Evolution of transcription factors and the gene regulatory network in E. coli. Nucleic Acids Res. 31, 1234-1244 (2003).
    • (2003) Nucleic Acids Res. , vol.31 , pp. 1234-1244
    • Madan Babu, M.1    Teichmann, S.A.2
  • 18
    • 0041704531 scopus 로고    scopus 로고
    • Evolution of cis-regulatory elements in duplicated genes of yeast
    • Papp, B., Pal, C.Y. & Hurst, L.D. Evolution of cis-regulatory elements in duplicated genes of yeast. Trends Genet. 19, 417-422 (2003).
    • (2003) Trends Genet. , vol.19 , pp. 417-422
    • Papp, B.1    Pal, C.Y.2    Hurst, L.D.3
  • 19
    • 0036013593 scopus 로고    scopus 로고
    • Statistical mechanics of complex networks
    • Albert, R. & Barabasi, A.L. Statistical mechanics of complex networks. Reviews Modern Phys. 74, 47-97 (2002).
    • (2002) Reviews Modern Phys. , vol.74 , pp. 47-97
    • Albert, R.1    Barabasi, A.L.2
  • 20
    • 0037174670 scopus 로고    scopus 로고
    • Network motifs: Simple building blocks of complex networks
    • Milo, R. et al. Network motifs: simple building blocks of complex networks. Science 298, 824-827 (2002).
    • (2002) Science , vol.298 , pp. 824-827
    • Milo, R.1
  • 21
    • 0037165942 scopus 로고    scopus 로고
    • Combinatorial synthesis of genetic networks
    • Guet, C.C., Elowitz, M.B., Hsing, W. & Leibler, S. Combinatorial synthesis of genetic networks. Science 296, 1466-1470 (2002).
    • (2002) Science , vol.296 , pp. 1466-1470
    • Guet, C.C.1    Elowitz, M.B.2    Hsing, W.3    Leibler, S.4
  • 23
    • 0037743679 scopus 로고    scopus 로고
    • Convergent evolution of gene circuits
    • Conant, G.C. & Wagner, A. Convergent evolution of gene circuits. Nat. Genet. 34, 264-266 (2003).
    • (2003) Nat. Genet. , vol.34 , pp. 264-266
    • Conant, G.C.1    Wagner, A.2
  • 24
    • 0034212551 scopus 로고    scopus 로고
    • Engineering stability in gene networks by autoregulation
    • Becskei, A. & Serrano, L. Engineering stability in gene networks by autoregulation. Nature 405, 590-593 (2000).
    • (2000) Nature , vol.405 , pp. 590-593
    • Becskei, A.1    Serrano, L.2
  • 25
    • 0034688174 scopus 로고    scopus 로고
    • Construction of a genetic toggle switch in Escherichia coli
    • Gardner T.S., Cantor C.R. & Collins, J.J. Construction of a genetic toggle switch in Escherichia coli. Nature 403, 339-342 (2000).
    • (2000) Nature , vol.403 , pp. 339-342
    • Gardner, T.S.1    Cantor, C.R.2    Collins, J.J.3
  • 26
    • 0036307754 scopus 로고    scopus 로고
    • The geometry of domain combination in proteins
    • Bashton, M. & Chothia, C. The geometry of domain combination in proteins. J. Mol. Biol. 315, 927-939 (2002).
    • (2002) J. Mol. Biol. , vol.315 , pp. 927-939
    • Bashton, M.1    Chothia, C.2
  • 27
    • 0035816218 scopus 로고    scopus 로고
    • Domain combinations in archaeal, eubacterial and eukaryotic proteomes
    • Apic, G., Gough, J. & Teichmann, S.A. Domain combinations in archaeal, eubacterial and eukaryotic proteomes. J. Mol. Biol. 310, 311-325 (2001).
    • (2001) J. Mol. Biol. , vol.310 , pp. 311-325
    • Apic, G.1    Gough, J.2    Teichmann, S.A.3
  • 28
    • 0028961335 scopus 로고
    • SCOP: A structural classification of proteins database for the investigation of sequences and structures
    • Murzin, A.G., Brenner, S.E., Hubbard, T. & Chothia, C. SCOP: a structural classification of proteins database for the investigation of sequences and structures. J. Mol. Biol. 247, 536-540 (1995).
    • (1995) J. Mol. Biol. , vol.247 , pp. 536-540
    • Murzin, A.G.1    Brenner, S.E.2    Hubbard, T.3    Chothia, C.4
  • 29
    • 0023989064 scopus 로고
    • Improved tools for biological sequence comparison
    • Pearson, W.R. & Lipman, D.J. Improved tools for biological sequence comparison. Proc. Natl. Acad. Sci. USA 85, 2444-2448 (1988).
    • (1988) Proc. Natl. Acad. Sci. USA , vol.85 , pp. 2444-2448
    • Pearson, W.R.1    Lipman, D.J.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.