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Volumn 319, Issue 3, 2002, Pages 649-671

Kinetic studies and structural models of the association of E. coli σ70 RNA polymerase with the λPR promoter: Large scale conformational changes in forming the kinetically significant intermediates

Author keywords

Mechanism; Protein folding; RNA polymerase; Transcription initiation

Indexed keywords

RNA POLYMERASE;

EID: 0036304755     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0022-2836(02)00293-0     Document Type: Article
Times cited : (97)

References (113)
  • 2
    • 18344418394 scopus 로고    scopus 로고
    • Protein-nucleic acid interactions during open complex formation investigated by systematic alteration of protein and DNA binding partners
    • (1999) Biochemistry , vol.38 , pp. 5959-5967
    • Helmann, J.D.1    DeHaseth, P.L.2
  • 5
    • 0032504132 scopus 로고    scopus 로고
    • Structure of the Escherichia coli RNA polymerase a subunit amino terminal domain
    • (1998) Science , vol.281 , pp. 262-266
    • Zhang, G.1    Darst, S.A.2
  • 12
    • 0034595499 scopus 로고    scopus 로고
    • R promoter of bacteriophage λ affect steps in open complex formation that precede DNA strand separation
    • (2000) J. Mol. Biol. , vol.299 , pp. 337-349
    • McKane, M.1    Gussin, G.N.2
  • 14
    • 0021857751 scopus 로고
    • Kinetics of open complex formation between Escherichia coli RNA polymerase and the lac UV5 promoter. Evidence for a sequential mechanism involving three steps
    • (1985) Biochemistry , vol.24 , pp. 2712-2723
    • Buc, H.1    McClure, W.R.2
  • 17
    • 0035896034 scopus 로고    scopus 로고
    • Differential melting of the transcription start site associated with changes in RNA polymerase-promoter contacts in initiating transcription complexes
    • (2001) J. Mol. Biol. , vol.307 , pp. 25-30
    • Brodolin, K.1    Buckle, M.2
  • 36
    • 0034671288 scopus 로고    scopus 로고
    • RNA polymerase: Structural similarities between bacterial RNA polymerase and eukaryotic RNA polymerase II
    • (2000) J. Mol. Biol. , vol.304 , pp. 687-698
    • Ebright, R.H.1
  • 54
    • 0030915128 scopus 로고    scopus 로고
    • Promoter recognition as measured by binding of polymerase to nontemplate strand oligonucleotide
    • (1997) Science , vol.276 , pp. 1258-1260
    • Marr, M.T.1    Roberts, J.W.2
  • 55
    • 0032502311 scopus 로고    scopus 로고
    • 70 subunit from Escherichia coli RNA polymerase are modulated by an interaction with the core enzyme
    • (1998) Biochemistry , vol.37 , pp. 3312-3320
    • Callaci, S.1    Heyduk, T.2
  • 65
  • 66
    • 0028035156 scopus 로고
    • The thumb's knuckle. Flexibility in the thumb subdomain of T7 RNA polymerase is revealed by the structure of a chimeric T7/T3 RNAP polymerase
    • (1994) J. Mol. Biol. , vol.244 , pp. 6-12
    • Sousa, R.1    Rose, J.P.2    Wang, B.C.3
  • 69
    • 0022409539 scopus 로고
    • Thermodynamic origins of specificity in the lac repressor-operator interaction. Adaptability in the recognition of mutant operator sites
    • (1985) J. Mol. Biol. , vol.186 , pp. 295-305
    • Mossing, M.C.1    Record M.T., Jr.2
  • 73
    • 0032483359 scopus 로고    scopus 로고
    • Characterization of the closed complex intermediate formed during transcription initiation by Escherichia coli RNA polymerase
    • (1998) J. Biol. Chem. , vol.273 , pp. 23549-23557
    • Li, X.-Y.1    McClure, W.R.2
  • 75
    • 0023645694 scopus 로고
    • The 0°C closed complexes between Escherichia coli RNA polymerase and two promoters, T7-A3 and lac UV5
    • (1987) J. Biol. Chem. , vol.262 , pp. 13654-13661
    • Kovacic, R.T.1
  • 80
    • 0026808773 scopus 로고
    • Transcription activation by cAMP receptor protein (CRP) at the Escherichia coli gal P1 promoter. Crucial role for the spacing between the CRP binding site and the -10 region
    • (1992) Biochemistry , vol.31 , pp. 9647-9656
    • Lavigne, M.1    Kolb, A.2    Buc, H.3
  • 81
    • 0028815976 scopus 로고
    • The transcriptional activator protein FIS: DNA interactions and cooperative interactions with RNA polymerase at the Escherichia coli rrnB P1 promoter
    • (1995) J. Mol. Biol. , vol.245 , pp. 197-207
    • Bokal A.J. IV1    Ross, W.2    Gourse, R.L.3
  • 90
    • 0032559232 scopus 로고    scopus 로고
    • Induced folding in RNA-protein recognition: More than a simple molecular handshake
    • (1998) Cell , vol.92 , pp. 149-151
    • Frankel, A.D.1    Smith, C.A.2
  • 94
    • 0028071996 scopus 로고
    • Apparent heat capacity change accompanying a nonspecific protein-DNA interaction. Escherichia coli SSB tetramer binding to oligodeoxyadenylates
    • (1994) Biochemistry , vol.33 , pp. 12896-12910
    • Ferrari, M.E.1    Lohman, T.M.2
  • 95
    • 0033153360 scopus 로고    scopus 로고
    • Adenine base unstacking dominates the observed enthalpy and heat capacity changes for the Escherichia coli SSB tetramer binding to single-stranded oligoadenylates
    • (1999) Biochemistry , vol.38 , pp. 7388-7397
    • Kozlov, A.G.1    Lohman, T.M.2
  • 108
    • 0016748261 scopus 로고
    • A procedure for the rapid, large-scale purification of Escherichia coli DNA-dependent RNA polymerase involving polymin P precipitation and DNA-cellulose chromatography
    • (1975) Biochemistry , vol.14 , pp. 4634-4638
    • Burgess, R.R.1    Jendrisak, J.J.2
  • 112
    • 0026244229 scopus 로고
    • MOLSCRIPT: A program to produce both detailed and schematic plots of protein structures
    • (1991) J. Appl. Cryst. , vol.24 , pp. 946-950
    • Kraulis, P.J.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.