Bacterial RNA polymerase

Current Opinion in Structural Biology

Volumn 11, Issue 2, 2001, Pages 155-162

  Darst, S A ^a  

^a ROCKEFELLER UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL ENZYME; RNA POLYMERASE;

CROSS LINKING; CRYSTAL STRUCTURE; ENZYME ACTIVE SITE; ENZYME ANALYSIS; ENZYME CONFORMATION; ENZYME SUBUNIT; PRIORITY JOURNAL; PROTEIN NUCLEIC ACID INTERACTION; REVIEW; RNA TRANSCRIPTION;

BACTERIA (MICROORGANISMS); EUKARYOTA;

EID: 0035312415     PISSN: 0959440X     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0959-440X(00)00185-8     Document Type: Review

References (57)

1. Genetics of RNA polymerases I, II and III
2. Bacterial RNA polymerase subunit ω and eukaryotic RNA polymerase subunit RPB6 are sequence, structural, and functional homologs and promote RNA polymerase assembly
3. Structure of the Escherichia coli RNA polymerase α subunit amino-terminal domain
4. Crystal structure of Thermus aquaticus core RNA polymerase at 3.3 Å resolution
5. Factor stimulating transcription by RNA polymerase
6. Bacterial sigma factors
7. Cyclic re-use of the RNA polymerase sigma factor
8. Deoxyribonucleic acid-directed synthesis of ribonucleic acid by an enzyme from Escherichia coli
9. Protein-nucleic acid interactions in transcription: A molecular analysis
10. The single-nucleotide addition cycle in transcription: A biophysical and biochemical perspective
11. Yeast RNA polymerase subunits and genes
12. A structure/function analysis of Escherichia coli RNA polymerase
13. Three-dimensional structure of Escherichia coli RNA polymerase holoenzyme determined by electron crystallography
14. Three-dimensional structure of yeast RNA polymerase II at 16 Å resolution
15. Three-dimensional model of yeast RNA polymerase I determined by electron microscopy of two-dimensional crystals
16. Three-dimensional structure of Escherichia coli core RNA polymerase: Promoter binding and elongation conformations of the enzyme
17. Insights into Escherichia coli RNA polymerase structure from a combination of X-ray and electron crystallography
18. Structural studies of Escherichia coli RNA polymerase
19. Electron crystal structure of an RNA polymerase II transcription elongation complex
20. Direct localization of a β subunit domain on the three-dimensional structure of Escherichia coli RNA polymerase
21. Structural mechanism for rifampicin inhibition of bacterial RNA polymerase
22. Architecture of RNA polymerase II and implications for the transcription mechanism
23. Structural organization of the RNA polymerase-promoter open complex
24. The orientation of DNA in an archaeal transcription initiation complex
25. A structural model of transcription elongation
26. Recombinant Thermus aquaticus RNA polymerase, a new tool for structure-based analysis of transcription
27. 1 ATPase
28. A zinc-binding site in the largest subunit of DNA-dependent RNA polymerase is involved in enzyme assembly
29. Escherichia coli RNA polymerase α subunit: Structure and function
30. Extensive homology among the largest subunits of eukaryotic and prokaryotic RNA polymerases
31. Analysis of the gene encoding the largest subunit of RNA polymerase II in Drosophila
32. Prokaryotic and eukaryotic RNA polymerases have homologous core subunits
33. New models for the mechanism of transcription elongation and its regulation
34. Mechanistic model of the elongation complex of Escherichia coli RNA polymerase
35. Modular organization of the catalytic center of RNA polymerase
36. Transcription elongation: Structural basis and mechanisms
37. RNA polymerase unveiled
38. The RNA-DNA hybrid maintains the register of transcription by preventing backtracking of RNA polymerase
39. Evidence of DNA bending in transcription complexes imaged by scanning force microscopy
40. Yeast RNA polymerase II at 5 Å resolution
41. Promoter proximal sequences modulate RNA polymerase II elongation by a novel mechanism
42. RNA polymerase switches between inactivated and activated states by translocating back and forth along the DNA and the RNA
43. Transcriptional arrest: Escherichia coli RNA polymerase translocates backward, leaving the 3′ end of the RNA intact and extruded
44. RNA polymerase structure-function: Insights into points of transcriptional regulation
45. Visualization of the binding site for the transcript cleavage factor GreB on Escherichia coli RNA polymerase
46. Prediction of rho-independent Escherichia coli transcription terminators. A statistical analysis of their RNA stem-loop structures
47. Formation and crystallization of yeast RNA polymerase II elongation complexes
48. Protein folding and association: Insights from the interfacial and thermodynamic properties of hydrocarbons
49. Improved methods for building protein models in electron density maps and the location of errors in these models
50. E. coli RNA polymerase interacts homologously with two different promoters
51. Mapping of single-stranded regions in duplex DNA at the sequence level: Single-strand-specific cytosine methylation in RNA polymerase-promoter complexes
52. Development of RNA polymerase-promoter contacts during open complex formation
53. Translocation of the Escherichia coli transcription complex observed in the registers 11 to 20: 'Jumping' of RNA polymerase and asymmetric expansion and contraction of the 'transcription bubble'
54. A cinematographic view of Escherichia coli RNA polymerase translocation
55. Topography of intermediates in transcription initiation of E. coli
56. RNA folding during transcription by Escherichia coli RNA polymerase analyzed by RNA self-cleavage
57. Functional topography of nascent RNA in elongation intermediates of RNA polymerase