Enthalpy and heat capacity changes for formation of an oligomeric DNA duplex: Interpretation in terms of coupled processes of formation and association of single-stranded helices

Biochemistry

Volumn 38, Issue 26, 1999, Pages 8409-8422

  Holbrook, Jill A ^a   Capp, Michael W ^a   Saecker, Ruth M ^a   Record Jr , M Thomas ^a  

^a UNIVERSITY OF WISCONSIN MADISON   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DNA;

ARTICLE; DIFFERENTIAL SCANNING CALORIMETRY; DNA DENATURATION; DNA HELIX; ENTHALPY; NONHUMAN; OLIGOMERIZATION; PRIORITY JOURNAL; TEMPERATURE DEPENDENCE; THERMODYNAMICS;

EID: 0033614819     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi990043w     Document Type: Article

References (46)

1. Filimonov, V. V. (1986) in Thermodynamic Data for Biochemistry and Biotechnology (Hinz, H.-J., Ed.) pp 377-401, Springer-Verlag, Berlin.
2. Kool, E. T. (1997) Chem. Rev. 97, 1473-1487.
3. Turner, D. H. (1996) Curr. Opin. Struct. Biol. 6, 299-304.
4. SantaLucia, J., Jr. (1998) Proc. Natl. Acad. Sci. U.S.A. 95, 1460-1465.
5. Vesnaver, G., and Breslauer, K. J. (1991) Proc. Natl. Acad. Sci. U.S.A. 88, 3569-3573.
6. Shaio, D. D. F., and Sturtevant, J. M. (1973) Biopolymers 12, 1829-1836.
7. Nordmeier, E. (1992) J. Phys. Chem. 96, 1494-1501.
8. Korolev, N. I., Vlasov, A. P., and Kuznetsov, I. A. (1984) Biopolymers 34, 1275-1290.
9. Ladbury, J. E., Sturtevant, J. M., and Leontis, N. B. (1994) Biochemistry 33, 6828-6833.
10. Lu, M., Guo, Q., Marky, L. A., Seeman, N. C., and Kallenbach, N. R. (1992) J. Mol. Biol. 223, 781-789.
11. Filimonov, V., and Privalov, P. L. (1978) J. Mol. Biol. 122, 465-470.
12. Breslauer, K. J., Sturtevant, J. M., and Tinoco, I., Jr. (1975) J. Mol. Biol. 99, 549-565.
13. Freier, S. M., Sugimoto, N., Sinclair, A., Alkema, D., Neilson, T., Kierzek, R., Caruthers, M. H., and Turner, D. H. (1986) Biochemistry 25, 3214-3219.
14. Blake, R. D., and Delcourt, S. G. (1998) Nucleic Acids Res. 26, 3323-3332; erratum Nucleic Acids Res. 27, number 3 (1999).
15. Allawi, H. T., and SantaLucia, J., Jr. (1997) Biochemistry 36, 10581-10594.
16. Sugimoto, N., Nakano, S., Yoneyama, M., and Honda, K. (1996) Nucleic Acids Res. 24, 4501-4505.
17. Spolar, R. S., Ha, J.-H., and Record, M. T., Jr. (1989) Proc. Natl. Acad. Sci. U.S.A. 86, 8382-8385.
18. Privalov, P. L., and Gill, S. J. (1988) Adv. Protein Chem. 39, 191-234.
19. Spolar, R. S., Livingstone, J. R., and Record, M. T., Jr. (1992) Biochemistry 31, 3947-3955.
20. Spolar, R. S., and Record, M. T., Jr. (1994) Science 263, 777-784.
21. Murphy, K. P., and Freire, E. (1992) Adv. Protein Chem. 43, 313-361.
22. Privalov, P. L., and Makhatadze, G. I. (1992) J. Mol. Biol. 224, 715-723.
23. Makhatadze, G. I., and Privalov, P. L. (1995) Adv. Protein Chem. 47, 307-425.
24. Robertson, A. D., and Murphy, K. P. (1997) Chem. Rev. 97, 1251-1267.
25. Myers, J. K., Pace, C. N., and Scholtz, J. M. (1995) Protein Sci. 4, 2138-2148.
26. Laskowski, M., Sr. (1971) in The Enzymes (Boyer, P. D., Ed.) 3rd ed., Vol. 4, pp 313-328, Academic Press, New York.
27. Cantor, C. R., Warshaw, M. M., and Shapiro, H. (1970) Biopolymers 9, 1059-1077.
28. MicroCal, Inc. (1993) Omega Ultrasensitive Isothermal Titration Calorimeter Instrument Instructions, p 53, MicroCal, Inc., Northampton, MA.
29. Richmond, T. J. (1984) J. Mol. Biol. 178, 63-89.
30. Livingstone, J. R., Spolar, R. S., and Record, M. T., Jr. (1991) Biochemistry 30, 4237-4244.
31. Privalov, P. L., Ptitsyn, O. B., and Birshtein, T. M. (1969) Biopolymers 8, 559-571.
32. Frank-Kamenetskii, M. D., Anshelevich, V. V., and Lukashin, A. (1987) U. Sov. Phys. Usp. 30, 317-330.
33. Bond, J. P., Anderson, C. F., and Record, M. T., Jr. (1994) Biophys. J. 67, 825-836.
34. Leng, M., and Felsenfeld, G. (1966) J. Mol. Biol. 15, 455-466.
35. Epand, R. M., and Scheraga, H. A. (1967) J. Am. Chem. Soc. 89, 3888-3892.
36. Pörschke, D. (1976) Biochemistry 15, 1495-1499.
37. Hirao, I., Nishimura, Y., Tagawa, Y., Watanabe, K., and Miura K. (1992) Nucleic Acids Res. 20, 3891-3896.
38. Hirao, I., Kawai, G., Yoshizawa, S., Nishimura, Y., Ishido, Y., Watanabe, K., and Miura, K. (1994) Nucleic Acids Res. 22, 576-582.
39. Jollès, B., Réfrégiers, M., and Laigle, A. (1997) Nucleic Acids Res. 25, 4608-4613.
40. Ferrari, M. E., and Lohman, T. M. (1994) Biochemistry 33, 12896-12910.
41. Freier, S. M., Hill, K. O., Dewey, T. G., Marky, L. A., Breslauer, K. J., and Turner, D. H. (1981) Biochemistry 20, 1419-1426.
42. Dewey, T. G., and Turner, D. H. (1979) Biochemistry 18, 5757-5761.
43. Breslauer, K. J., and Sturtevant, J. M. (1977) Biophys. Chem. 7, 205-209.
44. Brahms, J., Michelson, A. M., and Van Holde, K. E. (1966) J. Mol. Biol. 15, 467-488.
45. Van Holde, K. E., Brahms, J., and Michelson, A. M. (1965) J. Mol. Biol. 15, 726-739.
46. Applequist, J., and Damle, V. (1966) J. Am. Chem. Soc. 88, 3895-3900.