-
2
-
-
0346614817
-
-
Leontis N.B., J. Santa Lucia Jr., (eds), Washington): (ACS
-
Beveridge, D. L., Young, M. A., and Sprous, D., 1998. Molecular modeling of nucleic acids Edited by:Leontis, N. B., and J. Santa LuciaJr. 260–284. Washington):(ACS.
-
(1998)
Molecular modeling of nucleic acids
, pp. 260-284
-
-
Beveridge, D.L.1
Young, M.A.2
Sprous, D.3
-
3
-
-
0029170114
-
-
Cheatham, T. E., III, Miller, J. L., Fox, T., Darden, T. A., and Kollman, P. A., 1995. J. Amer. Chem. Soc., 117:4193–4194.
-
(1995)
J. Amer. Chem. Soc.
, vol.117
, pp. 4193-4194
-
-
Cheatham, T.E.1
Miller, J.L.2
Fox, T.3
Darden, T.A.4
Kollman, P.A.5
-
6
-
-
0030954859
-
-
Cheatham, T. E., III, Crowley, M. F., Fox, T., and Kollman, P. A., 1997. Proc. Natl. Acad. Sci., 94:9626–9630.
-
(1997)
Proc. Natl. Acad. Sci.
, vol.94
, pp. 9626-9630
-
-
Cheatham, T.E.1
Crowley, M.F.2
Fox, T.3
Kollman, P.A.4
-
8
-
-
0347875085
-
-
Leontis N.B., J. Santa Lucia Jr., (eds), Washington, DC
-
Cheatham, T. E., III, Miller, J. L., Spector, T. I., Cieplak, P., and Kollman, P. A., 1998. Molecular modeling and structure determination of nucleic acids, ACS Symposia Series Edited by:Leontis, N. B., and J. Santa LuciaJr. 285–303. Washington, DC
-
(1998)
Molecular modeling and structure determination of nucleic acids
, pp. 285-303
-
-
Cheatham, T.E.1
Miller, J.L.2
Spector, T.I.3
Cieplak, P.4
Kollman, P.A.5
-
9
-
-
0002042326
-
-
Sarma M., Sarma R., (eds), Schenectady, NY: Adenine Press
-
Cheatham, T. E., III and Kollman, P. A., 1998. Structure, motion, interactions and expression of biological macromolecules Edited by:Sarma, M., and Sarma, R., 99–116. Schenectady, NY:Adenine Press.
-
(1998)
Structure, motion, interactions and expression of biological macromolecules
, pp. 99-116
-
-
Cheatham, T.E.1
Kollman, P.A.2
-
10
-
-
0030759587
-
-
Cieplak, P., Cheatham, T. E., III and Kollman, P. A., 1997. J. Amer. Chem. Soc., 119:6722–6730.
-
(1997)
J. Amer. Chem. Soc.
, vol.119
, pp. 6722-6730
-
-
Cieplak, P.1
Cheatham, T.E.2
Kollman, P.A.3
-
14
-
-
0001211689
-
-
Leontis N.B., J. Santa Lucia Jr., (eds), Washington): (ACS
-
MacKerell, A. D.J., 1998. Molecular modeling of nucleic acids Edited by:Leontis, N. B., and J. Santa LuciaJr. 304–311. Washington):(ACS.
-
(1998)
Molecular modeling of nucleic acids
, pp. 304-311
-
-
MacKerell, A.D.J.1
-
15
-
-
0030745348
-
-
Spector, T. I., Cheatham, T. E., III and Kollman, P. A., 1997. J. Amer. Chem. Soc., 119:7095–7104.
-
(1997)
J. Amer. Chem. Soc.
, vol.119
, pp. 7095-7104
-
-
Spector, T.I.1
Cheatham, T.E.2
Kollman, P.A.3
-
16
-
-
0000115258
-
-
Sprous, D., Young, M. A., and Beveridge, D. L., 1998. J. Phys. Chem. B., 102:4658–4667.
-
(1998)
J. Phys. Chem. B.
, vol.102
, pp. 4658-4667
-
-
Sprous, D.1
Young, M.A.2
Beveridge, D.L.3
-
17
-
-
0030862276
-
-
Young, M. A., Ravishanker, G., and Beveridge, D. L., 1997. Biophys. J., 73:2313–2336.
-
(1997)
Biophys. J.
, vol.73
, pp. 2313-2336
-
-
Young, M.A.1
Ravishanker, G.2
Beveridge, D.L.3
-
18
-
-
0029131632
-
-
Gao, Y.-G., Robinson, H., van Boom, J. H., and Wang, A. H.-J., 1995. Biophys. J., 69:559–568.
-
(1995)
Biophys. J.
, vol.69
, pp. 559-568
-
-
Gao, Y.-G.1
Robinson, H.2
van Boom, J.H.3
Wang, A.H.J.4
-
24
-
-
85023953615
-
-
[in press]
-
Srinivasan, J., Cheatham, T. E. I., Cieplak, P., Kollman, P. A., and Case, D. A., 1998. J. Amer. Chem. Soc, [in press]
-
(1998)
J. Amer. Chem. Soc
-
-
Srinivasan, J.1
Cheatham, T.E.I.2
Cieplak, P.3
Kollman, P.A.4
Case, D.A.5
-
25
-
-
85023927728
-
-
[submitted]
-
Srinivasan, J., Miller, J. L., Kollman, P. A., and Case, D. A., 1998. J. Biomol. Struct. Dyn, [submitted]
-
(1998)
J. Biomol. Struct. Dyn
-
-
Srinivasan, J.1
Miller, J.L.2
Kollman, P.A.3
Case, D.A.4
-
26
-
-
0001611806
-
-
Osapay, K., Young, W., Bashford, D., Brooks, C. L., III and Case, D. A., 1996. J. Phys. Chem., 100:2698–2705.
-
(1996)
J. Phys. Chem.
, vol.100
, pp. 2698-2705
-
-
Osapay, K.1
Young, W.2
Bashford, D.3
Brooks, C.L.4
Case, D.A.5
-
27
-
-
0030953142
-
-
Bashford, D., Case, D. A., Choi, C., and Gippert, G. P., 1997. J. Amer. Chem. Soc., 119:4964–4971.
-
(1997)
J. Amer. Chem. Soc.
, vol.119
, pp. 4964-4971
-
-
Bashford, D.1
Case, D.A.2
Choi, C.3
Gippert, G.P.4
-
28
-
-
0030852818
-
-
Demchuk, E., Bashford, D., Gippert, G., and Case, D. A., 1997. J. Mol. Biol., 270:305–317.
-
(1997)
J. Mol. Biol.
, vol.270
, pp. 305-317
-
-
Demchuk, E.1
Bashford, D.2
Gippert, G.3
Case, D.A.4
-
30
-
-
0030596522
-
-
Yang, A.-S., Hitz, B., and Honig, B., 1996. J. Mol. Biol., 259:873–882.
-
(1996)
J. Mol. Biol.
, vol.259
, pp. 873-882
-
-
Yang, A.-S.1
Hitz, B.2
Honig, B.3
-
32
-
-
33751385054
-
-
Honig, B., Sharp, K., and Yang, A.-S., 1993. J. Phys. Chem., 97:1101–1109.
-
(1993)
J. Phys. Chem.
, vol.97
, pp. 1101-1109
-
-
Honig, B.1
Sharp, K.2
Yang, A.-S.3
-
33
-
-
0029633186
-
-
Pearlman, D. A., Case, D. A., Caldwell, J. W., Ross, W. S., Cheatham, T. E., III, Debolt, S., Ferguson, D., Seibel, G., and Kollman, P., 1995. Comp. Phys. Comm., 91:1–41.
-
(1995)
Comp. Phys. Comm.
, vol.91
, pp. 1-41
-
-
Pearlman, D.A.1
Case, D.A.2
Caldwell, J.W.3
Ross, W.S.4
Cheatham, T.E.5
Debolt, S.6
Ferguson, D.7
Seibel, G.8
Kollman, P.9
-
34
-
-
0029011701
-
-
Cornell, W. D., Cieplak, P., Bayly, C. I., Gould, I. R., Merz, K. M., Ferguson, D. M., Spellmeyer, D. C., Fox, T., Caldwell, J. W., and Kollman, P. A., 1995. J. Amer. Chem. Soc., 117:5179–5197.
-
(1995)
J. Amer. Chem. Soc.
, vol.117
, pp. 5179-5197
-
-
Cornell, W.D.1
Cieplak, P.2
Bayly, C.I.3
Gould, I.R.4
Merz, K.M.5
Ferguson, D.M.6
Spellmeyer, D.C.7
Fox, T.8
Caldwell, J.W.9
Kollman, P.A.10
-
37
-
-
0007728014
-
-
Singh, U. C., Weiner, S. C., and Kollman, P. A., 1985. Proc. Natl. Acad. Sci., 82:755–759.
-
(1985)
Proc. Natl. Acad. Sci.
, vol.82
, pp. 755-759
-
-
Singh, U.C.1
Weiner, S.C.2
Kollman, P.A.3
-
38
-
-
0004016501
-
-
Jorgensen, W. L., Chandrasekhar, J., Madura, J. D., Impey, R. W., and Klein, M. L., 1983. J. Chem. Phys., 79:926–935.
-
(1983)
J. Chem. Phys.
, vol.79
, pp. 926-935
-
-
Jorgensen, W.L.1
Chandrasekhar, J.2
Madura, J.D.3
Impey, R.W.4
Klein, M.L.5
-
40
-
-
33645961739
-
-
Essmann, U., Perera, L., Berkowitz, M. L., Darden, T., Lee, H., and Pedersen, L. G., 1995. J. Chem. Phys., 103:8577–8593.
-
(1995)
J. Chem. Phys.
, vol.103
, pp. 8577-8593
-
-
Essmann, U.1
Perera, L.2
Berkowitz, M.L.3
Darden, T.4
Lee, H.5
Pedersen, L.G.6
-
41
-
-
33750587438
-
-
Berendsen, H. J. C., Postma, J. P. M., van Gunsteren, W. F., DiNola, A., and Haak, J. R., 1984. J. Comp. Phys., 81:3684–3690.
-
(1984)
J. Comp. Phys.
, vol.81
, pp. 3684-3690
-
-
Berendsen, H.J.C.1
Postma, J.P.M.2
van Gunsteren, W.F.3
DiNola, A.4
Haak, J.R.5
-
42
-
-
33646940952
-
-
Ryckaert, J. P., Ciccotti, G., and Berendsen, H. J. C., 1977. J. Comp. Phys., 23:327–341.
-
(1977)
J. Comp. Phys.
, vol.23
, pp. 327-341
-
-
Ryckaert, J.P.1
Ciccotti, G.2
Berendsen, H.J.C.3
-
43
-
-
0001430231
-
-
Harvey, S. C., Tan, R. K.-Z., and Cheatham, T. E., III. 1998. J. Comp. Chem., 19:726–740.
-
(1998)
J. Comp. Chem.
, vol.19
, pp. 726-740
-
-
Harvey, S.C.1
Tan, R.K.Z.2
Cheatham, T.E.3
-
44
-
-
0345983583
-
-
Leontis N.B., J. Santa Lucia Jr., (eds), Washington): (ACS
-
Macke, T., and Case, D. A., 1998. Molecular modeling of nucleic acids Edited by:Leontis, N. B., and J. Santa LuciaJr. 379–393. Washington):(ACS.
-
(1998)
Molecular modeling of nucleic acids
, pp. 379-393
-
-
Macke, T.1
Case, D.A.2
-
45
-
-
0024556774
-
-
Ravishanker, G., Swaminathan, S., Beveridge, D. L., Lavery, R., and Sklenar, H., 1989. J. Biomol. Struct. Dyn., 6:669–699.
-
(1989)
J. Biomol. Struct. Dyn.
, vol.6
, pp. 669-699
-
-
Ravishanker, G.1
Swaminathan, S.2
Beveridge, D.L.3
Lavery, R.4
Sklenar, H.5
-
47
-
-
0023977089
-
-
Ferrin, T. E., Huang, C. C., Jarvis, L. E., and Langridge, R., 1988. J. Mol. Graphics, 6:13–27.
-
(1988)
J. Mol. Graphics
, vol.6
, pp. 13-27
-
-
Ferrin, T.E.1
Huang, C.C.2
Jarvis, L.E.3
Langridge, R.4
-
48
-
-
0024599312
-
-
Dickerson, R. E., Bansal, M., Calladine, C. R., Diekmann, S., Hunter, W., Kennard, O., von Kitzing, E., Lavery, R., Nelson, H. C. M., Olson, W. K., Saenger, W., Shakked, Z., Sklenar, H., Soumpasis, D. M., Tung, C. S., Wang, A. H., and Zhurkin, V. B., 1989. Nuc. Acids Res., 17:1797–1803.
-
(1989)
Nuc. Acids Res.
, vol.17
, pp. 1797-1803
-
-
Dickerson, R.E.1
Bansal, M.2
Calladine, C.R.3
Diekmann, S.4
Hunter, W.5
Kennard, O.6
von Kitzing, E.7
Lavery, R.8
Nelson, H.C.M.9
Olson, W.K.10
Saenger, W.11
Shakked, Z.12
Sklenar, H.13
Soumpasis, D.M.14
Tung, C.S.15
Wang, A.H.16
Zhurkin, V.B.17
-
51
-
-
85023923270
-
-
San Francisco: Department of Pharmaceutical Chemistry, University of California, PhD Thesis. pages
-
Cheatham, T. E., III. 1997. Realistic simulation of nucleic acids in solution 262San Francisco:Department of Pharmaceutical Chemistry, University of California. PhD Thesis. pages
-
(1997)
Realistic simulation of nucleic acids in solution
, pp. 262
-
-
Cheatham, T.E.1
-
52
-
-
0026699291
-
-
Poncin, M., Hartmann, B., and Lavery, R., 1992. J. Mol. Biol., 226:775–794.
-
(1992)
J. Mol. Biol.
, vol.226
, pp. 775-794
-
-
Poncin, M.1
Hartmann, B.2
Lavery, R.3
-
55
-
-
0344778061
-
-
Still, W. C., Tempczyk, A., Hawley, R. C., and Hendrickson, T., 1990. J. Amer. Chem. Soc., 112:6127–6128.
-
(1990)
J. Amer. Chem. Soc.
, vol.112
, pp. 6127-6128
-
-
Still, W.C.1
Tempczyk, A.2
Hawley, R.C.3
Hendrickson, T.4
-
56
-
-
32844457567
-
-
Sitkoff, D., Sharp, K. A., and Honig, B., 1994. J. Phys. Chem., 98:1978–1988.
-
(1994)
J. Phys. Chem.
, vol.98
, pp. 1978-1988
-
-
Sitkoff, D.1
Sharp, K.A.2
Honig, B.3
-
57
-
-
84988087911
-
-
Gilson, M. K., Sharp, K. A., and Honig, B. H., 1987. J. Comp. Chem., 9:327–335.
-
(1987)
J. Comp. Chem.
, vol.9
, pp. 327-335
-
-
Gilson, M.K.1
Sharp, K.A.2
Honig, B.H.3
-
58
-
-
0002636134
-
-
Hawkins, G. D., Cramer, C. J., and Truhlar, D. G., 1995. Chem. Phys. Lett., 246:122–129.
-
(1995)
Chem. Phys. Lett.
, vol.246
, pp. 122-129
-
-
Hawkins, G.D.1
Cramer, C.J.2
Truhlar, D.G.3
-
59
-
-
0002067212
-
-
Dudek, M. J., Ramnarayan, K., and Ponder, J. W., 1998. J. Comp. Chem., 19:548–573.
-
(1998)
J. Comp. Chem.
, vol.19
, pp. 548-573
-
-
Dudek, M.J.1
Ramnarayan, K.2
Ponder, J.W.3
-
60
-
-
0030040323
-
-
Sanner, M. F., Olson, A. J., and Spehner, J.-C., 1996. Biopoly., 38:305–320.
-
(1996)
Biopoly.
, vol.38
, pp. 305-320
-
-
Sanner, M.F.1
Olson, A.J.2
Spehner, J.-C.3
-
62
-
-
85023916976
-
-
[submitted]
-
Cheatham, T. E., Cieplak, P., and Kollman, P. A., 1998. J. Biomol. Struct. Dyn, [submitted]
-
(1998)
J. Biomol. Struct. Dyn
-
-
Cheatham, T.E.1
Cieplak, P.2
Kollman, P.A.3
-
63
-
-
0030338497
-
-
Knott S., (ed), New York): (Plenum Press
-
Garcia, A. E., Hummer, G., and Soumpasis, D. M., 1996. Neutrons in Biology Edited by:Knott, S., 299–308. New York):(Plenum Press.
-
(1996)
Neutrons in Biology
, pp. 299-308
-
-
Garcia, A.E.1
Hummer, G.2
Soumpasis, D.M.3
-
66
-
-
0027138869
-
-
Schneider, B., Cohen, D. M., Schleifer, L., Srinivasan, A. R., Olson, W. K., and Berman, H. M., 1993. Biophys. J., 65:2291–2303.
-
(1993)
Biophys. J.
, vol.65
, pp. 2291-2303
-
-
Schneider, B.1
Cohen, D.M.2
Schleifer, L.3
Srinivasan, A.R.4
Olson, W.K.5
Berman, H.M.6
-
69
-
-
0024121512
-
-
Subramanian, P. S., Ravishanker, G., and Beveridge, D. L., 1988. Proc. Natl. Acad. Sci. USA, 85:1836–1840.
-
(1988)
Proc. Natl. Acad. Sci. USA
, vol.85
, pp. 1836-1840
-
-
Subramanian, P.S.1
Ravishanker, G.2
Beveridge, D.L.3
-
71
-
-
0025338247
-
-
Subramanian, P. S., Swaminathan, S., and Beveridge, D. L., 1990. J. Biomol. Struct. Dyn., 7:1161–1165.
-
(1990)
J. Biomol. Struct. Dyn.
, vol.7
, pp. 1161-1165
-
-
Subramanian, P.S.1
Swaminathan, S.2
Beveridge, D.L.3
-
72
-
-
0040008175
-
-
Teplukhin, A. V., Zhurkin, V. B., Jernigan, R., and Poltev, V. I., 1996. Mol. Biol., 1:75–84.
-
(1996)
Mol. Biol.
, vol.1
, pp. 75-84
-
-
Teplukhin, A.V.1
Zhurkin, V.B.2
Jernigan, R.3
Poltev, V.I.4
-
73
-
-
0032499635
-
-
Shui, X., Mcfail-lson, L., Hu, G. G., and Dean Williams, L., 1998. Biochem., 37:8341–8355.
-
(1998)
Biochem.
, vol.37
, pp. 8341-8355
-
-
Shui, X.1
McFail-lson, L.2
Hu, G.G.3
Dean Williams, L.4
-
74
-
-
0031047279
-
-
Young, M. A., Jayaram, B., and Beveridge, D. L., 1997. J. Amer. Chem. Soc., 119:59–69.
-
(1997)
J. Amer. Chem. Soc.
, vol.119
, pp. 59-69
-
-
Young, M.A.1
Jayaram, B.2
Beveridge, D.L.3
-
75
-
-
0002593973
-
-
Westhof E., (ed), New York): (Macmillan Press
-
Beveridge, D. L., Swaminathan, S., Ravishanker, G., Withka, J. M., Srinivasan, J., Prevost, C., Louise-May, S., Langley, D. R., DiCapuaand, F. M., and Bolton, P. H., 1993. Water and Biological Molecules Edited by:Westhof, E., 165–225. New York):(Macmillan Press.
-
(1993)
Water and Biological Molecules
, pp. 165-225
-
-
Beveridge, D.L.1
Swaminathan, S.2
Ravishanker, G.3
Withka, J.M.4
Srinivasan, J.5
Prevost, C.6
Louise-May, S.7
Langley, D.R.8
DiCapuaand, F.M.9
Bolton, P.H.10
|