-
1
-
-
33748928488
-
Fitness of human enteric pathogens on plants and implications for food safety
-
Brandl MT. 2006. Fitness of human enteric pathogens on plants and implications for food safety. Annu Rev Phytopathol 44:367-392. https://doi.org/10.1146/annurev.phyto.44.070505.143359
-
(2006)
Annu Rev Phytopathol
, vol.44
, pp. 367-392
-
-
Brandl, M.T.1
-
2
-
-
39149098750
-
Microbial contamination of fruit and vegetables and the behaviour of enteropathogens in the phyllosphere: a review
-
Heaton JC, Jones K. 2008. Microbial contamination of fruit and vegetables and the behaviour of enteropathogens in the phyllosphere: a review. J Appl Microbiol 104:613-626. https://doi.org/10.1111/j.1365-2672.2007.03587.x
-
(2008)
J Appl Microbiol
, vol.104
, pp. 613-626
-
-
Heaton, J.C.1
Jones, K.2
-
3
-
-
84885481609
-
New insights into the structure and function of phyllosphere microbiota through high-throughput molecular approaches
-
Rastogi G, Coaker GL, Leveau J. 2013. New insights into the structure and function of phyllosphere microbiota through high-throughput molecular approaches. FEMS Microbiol Lett 348:1-10. https://doi.org/10.1111/1574-6968.12225
-
(2013)
FEMS Microbiol Lett
, vol.348
, pp. 1-10
-
-
Rastogi, G.1
Coaker, G.L.2
Leveau, J.3
-
4
-
-
84869162409
-
Microbial life in the phyllosphere
-
Vorholt JA. 2012. Microbial life in the phyllosphere. Nat Rev Microbiol 10:828-840. https://doi.org/10.1038/nrmicro2910
-
(2012)
Nat Rev Microbiol
, vol.10
, pp. 828-840
-
-
Vorholt, J.A.1
-
5
-
-
85000578269
-
The plant microbiota: systemslevel insights and perspectives
-
Müller DB, Vogel C, Bai Y, Vorholt JA. 2016. The plant microbiota: systemslevel insights and perspectives. Annu Rev Genet 50:211-234. https://doi .org/10.1146/annurev-genet-120215-034952
-
(2016)
Annu Rev Genet
, vol.50
, pp. 211-234
-
-
Müller, D.B.1
Vogel, C.2
Bai, Y.3
Vorholt, J.A.4
-
6
-
-
85054199530
-
The role of viruses in the phytobiome
-
Schoelz JE, Stewart LR. 2018. The role of viruses in the phytobiome. Annu Rev Virol 5:93-111. https://doi.org/10.1146/annurev-virology-0929 17-043421
-
(2018)
Annu Rev Virol
, vol.5
, pp. 93-111
-
-
Schoelz, J.E.1
Stewart, L.R.2
-
8
-
-
84956743134
-
Microbial hub taxa link host and abiotic factors to plant microbiome variation
-
Agler MT, Ruhe J, Kroll S, Morhenn C, Kim S-T, Weigel D, Kemen EM. 2016 Microbial hub taxa link host and abiotic factors to plant microbiome variation. PLoS Biol 14:e1002352. https://doi.org/10.1371/journal .pbio.1002352
-
(2016)
PLoS Biol
, vol.14
-
-
Agler, M.T.1
Ruhe, J.2
Kroll, S.3
Morhenn, C.4
Kim, S.-T.5
Weigel, D.6
Kemen, E.M.7
-
9
-
-
84899933739
-
The foliar microbiome
-
Peñuelas J, Terradas J. 2014. The foliar microbiome. Trends Plant Sci 19:278-280. https://doi.org/10.1016/j.tplants.2013.12.007
-
(2014)
Trends Plant Sci
, vol.19
, pp. 278-280
-
-
Peñuelas, J.1
Terradas, J.2
-
10
-
-
77952672792
-
Site and plant species are important determinants of the Methylobacterium community composition in the plant phyllosphere
-
Knief C, Ramette A, Frances L, Alonso-Blanco C, Vorholt JA. 2010. Site and plant species are important determinants of the Methylobacterium community composition in the plant phyllosphere. ISME J 4:719-728. https://doi.org/10.1038/ismej.2010.9
-
(2010)
ISME J
, vol.4
, pp. 719-728
-
-
Knief, C.1
Ramette, A.2
Frances, L.3
Alonso-Blanco, C.4
Vorholt, J.A.5
-
11
-
-
84901342373
-
A synthetic community approach reveals plant genotypes affecting the phyllosphere microbiota
-
Bodenhausen N, Bortfeld-Miller M, Ackermann M, Vorholt JA. 2014. A synthetic community approach reveals plant genotypes affecting the phyllosphere microbiota. PLoS Genet 10:e1004283. https://doi.org/10 .1371/journal.pgen.1004283
-
(2014)
PLoS Genet
, vol.10
-
-
Bodenhausen, N.1
Bortfeld-Miller, M.2
Ackermann, M.3
Vorholt, J.A.4
-
12
-
-
84903362470
-
Ecological succession and stochastic variation in the assembly of Arabidopsis thaliana phyllosphere communities
-
Maignien L, DeForce EA, Chafee ME, Eren AM, Simmons SL. 2014. Ecological succession and stochastic variation in the assembly of Arabidopsis thaliana phyllosphere communities. mBio 5:e00682-13
-
(2014)
mBio
, vol.5
-
-
Maignien, L.1
DeForce, E.A.2
Chafee, M.E.3
Eren, A.M.4
Simmons, S.L.5
-
13
-
-
84939825194
-
Plant microbiome: salicylic acid modulates colonization of the root microbiome by specific bacterial taxa
-
Lebeis SL, Paredes SH, Lundberg DS, Breakfield N, Gehring J, McDonald M, Malfatti S, Glavina del Rio T, Jones CD, Tringe SG, Dangl JL. 2015. Plant microbiome: salicylic acid modulates colonization of the root microbiome by specific bacterial taxa. Science 349:860-864. https://doi.org/10.1126/science.aaa8764
-
(2015)
Science
, vol.349
, pp. 860-864
-
-
Lebeis, S.L.1
Paredes, S.H.2
Lundberg, D.S.3
Breakfield, N.4
Gehring, J.5
McDonald, M.6
Malfatti, S.7
Glavina Del Rio, T.8
Jones, C.D.9
Tringe, S.G.10
Dangl, J.L.11
-
14
-
-
84874056533
-
Bacterial communities associated with the leaves and the roots of Arabidopsis thaliana
-
Bodenhausen N, Horton MW, Bergelson J. 2013. Bacterial communities associated with the leaves and the roots of Arabidopsis thaliana. PLoS One 8:e56329. https://doi.org/10.1371/journal.pone.0056329
-
(2013)
PLoS One
, vol.8
-
-
Bodenhausen, N.1
Horton, M.W.2
Bergelson, J.3
-
15
-
-
84951199920
-
Microbiomes: curating communities from plants
-
Beattie GA. 2015. Microbiomes: curating communities from plants. Nature 528:340-341. https://doi.org/10.1038/nature16319
-
(2015)
Nature
, vol.528
, pp. 340-341
-
-
Beattie, G.A.1
-
16
-
-
84950291119
-
Functional overlap of the Arabidopsis leaf and root microbiota
-
Bai Y, Müller DB, Srinivas G, Garrido-Oter R, Potthoff E, Rott M, Dombrowski N, Münch PC, Spaepen S, Remus-Emsermann M, Hüttel B, McHardy AC, Vorholt JA, Schulze-Lefert P. 2015. Functional overlap of the Arabidopsis leaf and root microbiota. Nature 528:364-369. https://doi.org/10.1038/nature16192
-
(2015)
Nature
, vol.528
, pp. 364-369
-
-
Bai, Y.1
Müller, D.B.2
Srinivas, G.3
Garrido-Oter, R.4
Potthoff, E.5
Rott, M.6
Dombrowski, N.7
Münch, P.C.8
Spaepen, S.9
Remus-Emsermann, M.10
Hüttel, B.11
McHardy, A.C.12
Vorholt, J.A.13
Schulze-Lefert, P.14
-
17
-
-
0030614144
-
Microbial population dynamics on leaves
-
Kinkel LL. 1997. Microbial population dynamics on leaves. Annu Rev Phytopathol 35:327-347. https://doi.org/10.1146/annurev.phyto.35.1.327
-
(1997)
Annu Rev Phytopathol
, vol.35
, pp. 327-347
-
-
Kinkel, L.L.1
-
18
-
-
0033746313
-
The ecology and biogeography of microorganisms on plant surfaces
-
Andrews JH, Harris RF. 2000. The ecology and biogeography of microorganisms on plant surfaces. Annu Rev Phytopathol 38:145-180. https://doi.org/10.1146/annurev.phyto.38.1.145
-
(2000)
Annu Rev Phytopathol
, vol.38
, pp. 145-180
-
-
Andrews, J.H.1
Harris, R.F.2
-
19
-
-
0027028090
-
Dispersal can limit local plant distribution
-
Primack RB, Miao SL. 1992. Dispersal can limit local plant distribution. Conserv Biol 6:513-519. https://doi.org/10.1046/j.1523-1739.1992.0604 0513.x
-
(1992)
Conserv Biol
, vol.6
, pp. 513-519
-
-
Primack, R.B.1
Miao, S.L.2
-
20
-
-
0033834648
-
Long-distance seed dispersal in plant populations
-
Cain ML, Milligan BG, Strand AE. 2000. Long-distance seed dispersal in plant populations. Am J Bot 87:1217-1227. https://doi.org/10.2307/2656 714
-
(2000)
Am J Bot
, vol.87
, pp. 1217-1227
-
-
Cain, M.L.1
Milligan, B.G.2
Strand, A.E.3
-
21
-
-
0033997061
-
Are plant populations seed-limited? A review of seed sowing experiments
-
Turnbull LA, Crawley MJ, Rees M. 2000. Are plant populations seed-limited? A review of seed sowing experiments. Oikos 88:225-238. https://doi.org/10 .1034/j.1600-0706.2000.880201.x
-
(2000)
Oikos
, vol.88
, pp. 225-238
-
-
Turnbull, L.A.1
Crawley, M.J.2
Rees, M.3
-
22
-
-
34250824612
-
Are plant populations seed limited? A critique and meta-analysis of seed addition experiments
-
Clark CJ, Poulsen JR, Levey DJ, Osenberg CW. 2007. Are plant populations seed limited? A critique and meta-analysis of seed addition experiments. Am Nat 170:128-142. https://doi.org/10.1086/518565
-
(2007)
Am Nat
, vol.170
, pp. 128-142
-
-
Clark, C.J.1
Poulsen, J.R.2
Levey, D.J.3
Osenberg, C.W.4
-
23
-
-
31544448331
-
Microbial biogeography: putting microorganisms on the map
-
Martiny JBH, Bohannan BJM, Brown JH, Colwell RK, Fuhrman JA, Green JL, Horner-Devine MC, Kane M, Krumins JA, Kuske CR, Morin PJ, Naeem S, Ovreås L, Reysenbach A-L, Smith VH, Staley JT. 2006. Microbial biogeography: putting microorganisms on the map. Nat Rev Microbiol 4:102-112. https://doi.org/10.1038/nrmicro1341
-
(2006)
Nat Rev Microbiol
, vol.4
, pp. 102-112
-
-
Martiny, J.B.H.1
Bohannan, B.J.M.2
Brown, J.H.3
Colwell, R.K.4
Fuhrman, J.A.5
Green, J.L.6
Horner-Devine, M.C.7
Kane, M.8
Krumins, J.A.9
Kuske, C.R.10
Morin, P.J.11
Naeem, S.12
Ovreås, L.13
Reysenbach, A.-L.14
Smith, V.H.15
Staley, J.T.16
-
24
-
-
84880917198
-
Dispersal in microbes: fungi in indoor air are dominated by outdoor air and show dispersal limitation at short distances
-
Adams RI, Miletto M, Taylor JW, Bruns TD. 2013. Dispersal in microbes: fungi in indoor air are dominated by outdoor air and show dispersal limitation at short distances. ISME J 7:1262-1273. https://doi.org/10 .1038/ismej.2013.28
-
(2013)
ISME J
, vol.7
, pp. 1262-1273
-
-
Adams, R.I.1
Miletto, M.2
Taylor, J.W.3
Bruns, T.D.4
-
25
-
-
78650321860
-
Evidence of dispersal limitation in soil microorganisms: isolation reduces species richness on mycorrhizal tree islands
-
Peay KG, Garbelotto M, Bruns TD. 2010. Evidence of dispersal limitation in soil microorganisms: isolation reduces species richness on mycorrhizal tree islands. Ecology 91:3631-3640. https://doi.org/10.1890/09-2237.1
-
(2010)
Ecology
, vol.91
, pp. 3631-3640
-
-
Peay, K.G.1
Garbelotto, M.2
Bruns, T.D.3
-
26
-
-
77958492668
-
Experimental tests of the bacterial distance-decay relationship
-
Bell T. 2010. Experimental tests of the bacterial distance-decay relationship. ISME J 4:1357-1365. https://doi.org/10.1038/ismej.2010.77
-
(2010)
ISME J
, vol.4
, pp. 1357-1365
-
-
Bell, T.1
-
27
-
-
1042290278
-
Lactic acid bacteria as functional starter cultures for the food fermentation industry
-
Leroy F, De Vuyst L. 2004. Lactic acid bacteria as functional starter cultures for the food fermentation industry. Trends Food Sci Technol 15:67-78. https://doi.org/10.1016/j.tifs.2003.09.004
-
(2004)
Trends Food Sci Technol
, vol.15
, pp. 67-78
-
-
Leroy, F.1
de Vuyst, L.2
-
28
-
-
80052220430
-
Importance of lactic acid bacteria in Asian fermented foods
-
Rhee SJ, Lee J-E, Lee C-H. 2011. Importance of lactic acid bacteria in Asian fermented foods. Microb Cell Fact 10(Suppl 1):S5. https://doi.org/10.1186/1475-2859-10-S1-S5
-
(2011)
Microb Cell Fact
, vol.10
-
-
Rhee, S.J.1
Lee, J.-E.2
Lee, C.-H.3
-
29
-
-
84929130407
-
Microbial ecology of watery kimchi
-
Kyung KH, Medina Pradas E, Kim SG, Lee YJ, Kim KH, Choi JJ, Cho JH, Chung CH, Barrangou R, Breidt F. 2015. Microbial ecology of watery kimchi. J Food Sci 80:M1031-M1038. https://doi.org/10.1111/1750-3841 .12848
-
(2015)
J Food Sci
, vol.80
, pp. M1031-M1038
-
-
Kyung, K.H.1
Medina Pradas, E.2
Kim, S.G.3
Lee, Y.J.4
Kim, K.H.5
Choi, J.J.6
Cho, J.H.7
Chung, C.H.8
Barrangou, R.9
Breidt, F.10
-
30
-
-
38449100996
-
DNA fingerprinting of lactic acid bacteria in sauerkraut fermentations
-
Plengvidhya V, Breidt F, Jr, Lu Z, Fleming HP. 2007. DNA fingerprinting of lactic acid bacteria in sauerkraut fermentations. Appl Environ Microbiol 73:7697-7702. https://doi.org/10.1128/AEM.01342-07
-
(2007)
Appl Environ Microbiol
, vol.73
, pp. 7697-7702
-
-
Plengvidhya, V.1
Breidt, F.2
Lu, Z.3
Fleming, H.P.4
-
31
-
-
9344227894
-
Vitamin content and amino acid composition of pickled garlic processed with and without fermentation
-
Montaño A, Casado FJ, de Castro A, Sánchez AH, Rejano L. 2004. Vitamin content and amino acid composition of pickled garlic processed with and without fermentation. J Agric Food Chem 52:7324-7330. https://doi.org/10.1021/jf040210l
-
(2004)
J Agric Food Chem
, vol.52
, pp. 7324-7330
-
-
Montaño, A.1
Casado, F.J.2
de Castro, A.3
Sánchez, A.H.4
Rejano, L.5
-
32
-
-
84940755777
-
Lactic acid bacteria in durum wheat flour are endophytic components of the plant during its entire life cycle
-
Minervini F, Celano G, Lattanzi A, Tedone L, De Mastro G, Gobbetti M, De Angelis M. 2015. Lactic acid bacteria in durum wheat flour are endophytic components of the plant during its entire life cycle. Appl Environ Microbiol 81:6736-6748. https://doi.org/10.1128/AEM.01852-15
-
(2015)
Appl Environ Microbiol
, vol.81
, pp. 6736-6748
-
-
Minervini, F.1
Celano, G.2
Lattanzi, A.3
Tedone, L.4
de Mastro, G.5
Gobbetti, M.6
de Angelis, M.7
-
33
-
-
84919683128
-
Lactococcus lactis metabolism and gene expression during growth on plant tissues
-
Golomb BL, Marco ML. 2015. Lactococcus lactis metabolism and gene expression during growth on plant tissues. J Bacteriol 197:371-381. https://doi.org/10.1128/JB.02193-14
-
(2015)
J Bacteriol
, vol.197
, pp. 371-381
-
-
Golomb, B.L.1
Marco, M.L.2
-
34
-
-
85047839090
-
Carrot juice fermentations as man-made microbial ecosystems dominated by lactic acid bacteria
-
Wuyts S, Van Beeck W, Oerlemans EFM, Wittouck S, Claes IJJ, De Boeck I, Weckx S, Lievens B, De Vuyst L, Lebeer S. 2018. Carrot juice fermentations as man-made microbial ecosystems dominated by lactic acid bacteria. Appl Environ Microbiol 84:e00134-18
-
(2018)
Appl Environ Microbiol
, vol.84
-
-
Wuyts, S.1
van Beeck, W.2
Oerlemans, E.F.M.3
Wittouck, S.4
Claes, I.J.J.5
de Boeck, I.6
Weckx, S.7
Lievens, B.8
de Vuyst, L.9
Lebeer, S.10
-
35
-
-
84868475286
-
Exploitation of vegetables and fruits through lactic acid fermentation
-
Di Cagno R, Coda R, De Angelis M, Gobbetti M. 2013. Exploitation of vegetables and fruits through lactic acid fermentation. Food Microbiol 33:1-10. https://doi.org/10.1016/j.fm.2012.09.003
-
(2013)
Food Microbiol
, vol.33
, pp. 1-10
-
-
Di Cagno, R.1
Coda, R.2
de Angelis, M.3
Gobbetti, M.4
-
36
-
-
0037590308
-
Effect of different salt concentrations on the microflora and physico-chemical changes in sauerkraut fermentation
-
Gangopadhyay H, Mukherjee S. 1971. Effect of different salt concentrations on the microflora and physico-chemical changes in sauerkraut fermentation. J Food Sci Technol Mysore 8:127-131
-
(1971)
J Food Sci Technol Mysore
, vol.8
, pp. 127-131
-
-
Gangopadhyay, H.1
Mukherjee, S.2
-
37
-
-
0030552418
-
Chemical and sensory characterization of commercial sauerkraut
-
Trail AC, Fleming HP, Young CT, Mcfeeters RF. 1996. Chemical and sensory characterization of commercial sauerkraut. J Food Quality 19: 15-30. https://doi.org/10.1111/j.1745-4557.1996.tb00402.x
-
(1996)
J Food Quality
, vol.19
, pp. 15-30
-
-
Trail, A.C.1
Fleming, H.P.2
Young, C.T.3
Mcfeeters, R.F.4
-
38
-
-
1242344843
-
Fermentation microorganisms and flavor changes in fermented foods
-
Mcfeeters RF. 2004. Fermentation microorganisms and flavor changes in fermented foods. J Food Sci 69:FMS35-FMS37. https://doi.org/10.1111/j.1365-2621.2004.tb17876.x
-
(2004)
J Food Sci
, vol.69
, pp. FMS35-FMS37
-
-
Mcfeeters, R.F.1
-
39
-
-
0040883743
-
The microbiology of vegetable fermentations
-
In Wood BJB (ed). Springer, New York, NY
-
Harris LJ. 1998. The microbiology of vegetable fermentations, p 45-72. In Wood BJB (ed), Microbiology of fermented foods. Springer, New York, NY
-
(1998)
Microbiology of fermented foods
, pp. 45-72
-
-
Harris, L.J.1
-
40
-
-
0036156681
-
Isolation and characterization of bacteriophages from fermenting sauerkraut
-
Yoon SS, Barrangou-Poueys R, Breidt F, Jr, Klaenhammer TR, Fleming HP. 2002 Isolation and characterization of bacteriophages from fermenting sauerkraut. Appl Environ Microbiol 68:973-976. https://doi.org/10.1128/AEM.68.2.973-976.2002
-
(2002)
Appl Environ Microbiol
, vol.68
, pp. 973-976
-
-
Yoon, S.S.1
Barrangou-Poueys, R.2
Breidt, F.3
Klaenhammer, T.R.4
Fleming, H.P.5
-
41
-
-
14644392118
-
Isolation and identification of lactic acid bacteria from soil using an enrichment procedure
-
Chen Y-S, Yanagida F, Shinohara T. 2005. Isolation and identification of lactic acid bacteria from soil using an enrichment procedure. Lett Appl Microbiol 40:195-200. https://doi.org/10.1111/j.1472-765X.2005.01653.x
-
(2005)
Lett Appl Microbiol
, vol.40
, pp. 195-200
-
-
Chen, Y.-S.1
Yanagida, F.2
Shinohara, T.3
-
42
-
-
84993971420
-
Prevalence and application of lactic acid bacteria in aquatic environments
-
In Lahtinen S, Salminen S, Ouwehand A, von Wright A (ed). CRC Press, Boca Raton, FL
-
Lauzon HL, Ringø E. 2011. Prevalence and application of lactic acid bacteria in aquatic environments, p 601-639. In Lahtinen S, Salminen S, Ouwehand A, von Wright A (ed), Lactic acid bacteria: microbiological and functional aspects. CRC Press, Boca Raton, FL
-
(2011)
Lactic acid bacteria: microbiological and functional aspects
, pp. 601-639
-
-
Lauzon, H.L.1
Ringø, E.2
-
43
-
-
84938854579
-
Source tracking and succession of kimchi lactic acid bacteria during fermentation
-
Lee SH, Jung JY, Jeon CO. 2015. Source tracking and succession of kimchi lactic acid bacteria during fermentation. J Food Sci 80:1871-1877
-
(2015)
J Food Sci
, vol.80
, pp. 1871-1877
-
-
Lee, S.H.1
Jung, J.Y.2
Jeon, C.O.3
-
44
-
-
84871985104
-
Effects of red pepper powder on microbial communities and metabolites during kimchi fermentation
-
Jeong SH, Lee HJ, Jung JY, Lee SH, Seo H-Y, Park W-S, Jeon CO. 2013. Effects of red pepper powder on microbial communities and metabolites during kimchi fermentation. Int J Food Microbiol 160:252-259. https://doi.org/10.1016/j.ijfoodmicro.2012.10.015
-
(2013)
Int J Food Microbiol
, vol.160
, pp. 252-259
-
-
Jeong, S.H.1
Lee, H.J.2
Jung, J.Y.3
Lee, S.H.4
Seo, H.-Y.5
Park, W.-S.6
Jeon, C.O.7
-
45
-
-
84993985697
-
Kimchi and other widely consumed traditional fermented foods of Korea: a review
-
Patra JK, Das G, Paramithiotis S, Shin H-S. 2016. Kimchi and other widely consumed traditional fermented foods of Korea: a review. Front Microbiol 7:1493. https://doi.org/10.3389/fmicb.2016.01493
-
(2016)
Front Microbiol
, vol.7
, pp. 1493
-
-
Patra, J.K.1
Das, G.2
Paramithiotis, S.3
Shin, H.-S.4
-
46
-
-
84981836237
-
A medium for the cultivation of lactobacilli
-
De Man JC, Rogosa M, Sharpe ME. 1960. A medium for the cultivation of lactobacilli. J Appl Bacteriol 23:130-135. https://doi.org/10.1111/j.1365-2672.1960.tb00188.x
-
(1960)
J Appl Bacteriol
, vol.23
, pp. 130-135
-
-
de Man, J.C.1
Rogosa, M.2
Sharpe, M.E.3
-
47
-
-
84879743032
-
Season, irrigation, leaf age, and Escherichia coli inoculation influence the bacterial diversity in the lettuce phyllosphere
-
Williams TR, Moyne A-L, Harris LJ, Marco ML. 2013. Season, irrigation, leaf age, and Escherichia coli inoculation influence the bacterial diversity in the lettuce phyllosphere. PLoS One 8:e68642. https://doi.org/10.1371/journal.pone.0068642
-
(2013)
PLoS One
, vol.8
-
-
Williams, T.R.1
Moyne, A.-L.2
Harris, L.J.3
Marco, M.L.4
-
48
-
-
85053131375
-
Microbial community analysis of sauerkraut fermentation reveals a stable and rapidly established community
-
Zabat MA, Sano WH, Wurster JI, Cabral DJ, Belenky P. 2018. Microbial community analysis of sauerkraut fermentation reveals a stable and rapidly established community. Foods 7:77. https://doi.org/10.3390/foods7050077
-
(2018)
Foods
, vol.7
, pp. 77
-
-
Zabat, M.A.1
Sano, W.H.2
Wurster, J.I.3
Cabral, D.J.4
Belenky, P.5
-
49
-
-
85055637038
-
A vegetable fermentation facility hosts distinct microbiomes reflecting the production environment
-
Einson JE, Rani A, You X, Rodriguez AA, Randell CL, Barnaba T, Mammel MK, Kotewicz ML, Elkins CA, Sela DA. 2018. A vegetable fermentation facility hosts distinct microbiomes reflecting the production environment. Appl Environ Microbiol 84:e01680-18
-
(2018)
Appl Environ Microbiol
, vol.84
-
-
Einson, J.E.1
Rani, A.2
You, X.3
Rodriguez, A.A.4
Randell, C.L.5
Barnaba, T.6
Mammel, M.K.7
Kotewicz, M.L.8
Elkins, C.A.9
Sela, D.A.10
-
50
-
-
84908262674
-
Phyllosphere microbiota composition and microbial community transplantation on lettuce plants grown indoors
-
Williams TR, Marco ML. 2014. Phyllosphere microbiota composition and microbial community transplantation on lettuce plants grown indoors. mBio 5:e01564-14
-
(2014)
mBio
, vol.5
-
-
Williams, T.R.1
Marco, M.L.2
-
51
-
-
84875430559
-
Bacterial communities associated with the surfaces of fresh fruits and vegetables
-
Leff JW, Fierer N. 2013. Bacterial communities associated with the surfaces of fresh fruits and vegetables. PLoS One 8:e59310. https://doi.org/10.1371/journal.pone.0059310
-
(2013)
PLoS One
, vol.8
-
-
Leff, J.W.1
Fierer, N.2
-
52
-
-
84867745648
-
Leaf microbiota in an agroecosystem: spatiotemporal variation in bacterial community composition on field-grown lettuce
-
Rastogi G, Sbodio A, Tech JJ, Suslow TV, Coaker GL, Leveau J. 2012. Leaf microbiota in an agroecosystem: spatiotemporal variation in bacterial community composition on field-grown lettuce. ISME J 6:1812-1822. https://doi.org/10.1038/ismej.2012.32
-
(2012)
ISME J
, vol.6
, pp. 1812-1822
-
-
Rastogi, G.1
Sbodio, A.2
Tech, J.J.3
Suslow, T.V.4
Coaker, G.L.5
Leveau, J.6
-
53
-
-
84877643132
-
Structure and functions of the bacterial microbiota of plants
-
Bulgarelli D, Schlaeppi K, Spaepen S, Ver Loren van Themaat E, Schulze-Lefert P. 2013. Structure and functions of the bacterial microbiota of plants. Annu Rev Plant Biol 64:807-838. https://doi.org/10.1146/annurev-arplant-050312-120106
-
(2013)
Annu Rev Plant Biol
, vol.64
, pp. 807-838
-
-
Bulgarelli, D.1
Schlaeppi, K.2
Spaepen, S.3
Ver Loren van Themaat, E.4
Schulze-Lefert, P.5
-
54
-
-
84862590329
-
Metaproteogenomic analysis of microbial communities in the phyllosphere and rhizosphere of rice
-
Knief C, Delmotte N, Chaffron S, Stark M, Innerebner G, Wassmann R, von Mering C, Vorholt JA. 2012. Metaproteogenomic analysis of microbial communities in the phyllosphere and rhizosphere of rice. ISME J 6:1378-1390. https://doi.org/10.1038/ismej.2011.192
-
(2012)
ISME J
, vol.6
, pp. 1378-1390
-
-
Knief, C.1
Delmotte, N.2
Chaffron, S.3
Stark, M.4
Innerebner, G.5
Wassmann, R.6
von Mering, C.7
Vorholt, J.A.8
-
55
-
-
84892393608
-
Distinct phyllosphere bacterial communities on Arabidopsis wax mutant leaves
-
Reisberg EE, Hildebrandt U, Riederer M, Hentschel U. 2013. Distinct phyllosphere bacterial communities on Arabidopsis wax mutant leaves. PLoS One 8:e78613. https://doi.org/10.1371/journal.pone.0078613
-
(2013)
PLoS One
, vol.8
-
-
Reisberg, E.E.1
Hildebrandt, U.2
Riederer, M.3
Hentschel, U.4
-
56
-
-
84994507798
-
The phyllosphere: microbial jungle at the plant-climate interface
-
Vacher C, Hampe A, Porté AJ, Sauer U, Compant S, Morris CE. 2016. The phyllosphere: microbial jungle at the plant-climate interface. Annu Rev Ecol Evol Syst 47:1-24. https://doi.org/10.1146/annurev-ecolsys-121415-032238
-
(2016)
Annu Rev Ecol Evol Syst
, vol.47
, pp. 1-24
-
-
Vacher, C.1
Hampe, A.2
Porté, A.J.3
Sauer, U.4
Compant, S.5
Morris, C.E.6
-
57
-
-
34250220333
-
Isolation and characterization of lactic acid bacteria from lakes
-
Yanagida F, Chen Y-S, Yasaki M. 2007. Isolation and characterization of lactic acid bacteria from lakes. J Basic Microbiol 47:184-190. https://doi .org/10.1002/jobm.200610237
-
(2007)
J Basic Microbiol
, vol.47
, pp. 184-190
-
-
Yanagida, F.1
Chen, Y.-S.2
Yasaki, M.3
-
58
-
-
0030661771
-
The dispersal and establishment of pseudomonad populations in the phyllosphere of sugar beet by phytophagous caterpillars
-
Lilley AK, Hails RS, Cory JS, Bailey MJ. 2006. The dispersal and establishment of pseudomonad populations in the phyllosphere of sugar beet by phytophagous caterpillars. FEMS Microbiol Ecol 24:151-157. https://doi .org/10.1016/S0168-6496(97)00054-8
-
(2006)
FEMS Microbiol Ecol
, vol.24
, pp. 151-157
-
-
Lilley, A.K.1
Hails, R.S.2
Cory, J.S.3
Bailey, M.J.4
-
59
-
-
84858050440
-
Symbionts as major modulators of insect health: lactic acid bacteria and honeybees
-
Vásquez A, Forsgren E, Fries I, Paxton RJ, Flaberg E, Szekely L, Olofsson TC. 2012. Symbionts as major modulators of insect health: lactic acid bacteria and honeybees. PLoS One 7:e33188. https://doi.org/10.1371/journal.pone.0033188
-
(2012)
PLoS One
, vol.7
-
-
Vásquez, A.1
Forsgren, E.2
Fries, I.3
Paxton, R.J.4
Flaberg, E.5
Szekely, L.6
Olofsson, T.C.7
-
60
-
-
0000711724
-
Aerial dispersal of epiphytic bacteria over bean plants
-
Lindemann J, Upper CD. 1985. Aerial dispersal of epiphytic bacteria over bean plants. Appl Environ Microbiol 50:1229-1232
-
(1985)
Appl Environ Microbiol
, vol.50
, pp. 1229-1232
-
-
Lindemann, J.1
Upper, C.D.2
-
61
-
-
85034804875
-
A communal catalogue reveals Earth's multiscale microbial diversity
-
Thompson LR, Sanders JG, McDonald D, Amir A, Ladau J, Locey KJ, Prill RJ, Tripathi A, Gibbons SM, Ackermann G, Navas-Molina JA, Janssen S, Kopylova E, Vázquez-Baeza Y, González A, Morton JT, Mirarab S, Zech Xu Z, Jiang L, Haroon MF, Kanbar J, Zhu Q, Jin Song S, Kosciolek T, Bokulich NA, Lefler J, Brislawn CJ, Humphrey G, Owens SM, Hampton-Marcell J, Berg-Lyons D, McKenzie V, Fierer N, Fuhrman JA, Clauset A, Stevens RL, Shade A, Pollard KS, Goodwin KD, Jansson JK, Gilbert JA, Knight R, Earth Microbiome Project Consortium. 2017. A communal catalogue reveals Earth's multiscale microbial diversity. Nature 551:457-463. https://doi .org/10.1038/nature24621
-
(2017)
Nature
, vol.551
, pp. 457-463
-
-
Thompson, L.R.1
Sanders, J.G.2
McDonald, D.3
Amir, A.4
Ladau, J.5
Locey, K.J.6
Prill, R.J.7
Tripathi, A.8
Gibbons, S.M.9
Ackermann, G.10
Navas-Molina, J.A.11
Janssen, S.12
Kopylova, E.13
Vázquez-Baeza, Y.14
González, A.15
Morton, J.T.16
Mirarab, S.17
Zech Xu, Z.18
Jiang, L.19
Haroon, M.F.20
Kanbar, J.21
Zhu, Q.22
Jin Song, S.23
Kosciolek, T.24
Bokulich, N.A.25
Lefler, J.26
Brislawn, C.J.27
Humphrey, G.28
Owens, S.M.29
Hampton-Marcell, J.30
Berg-Lyons, D.31
McKenzie, V.32
Fierer, N.33
Fuhrman, J.A.34
Clauset, A.35
Stevens, R.L.36
Shade, A.37
Pollard, K.S.38
Goodwin, K.D.39
Jansson, J.K.40
Gilbert, J.A.41
Knight, R.42
more..
-
62
-
-
84856460525
-
Dynamic changes of lactic acid bacteria flora during Chinese sauerkraut fermentation
-
Xiong T, Guan Q, Song S, Hao M, Xie M. 2012. Dynamic changes of lactic acid bacteria flora during Chinese sauerkraut fermentation. Food Control 26:178-181. https://doi.org/10.1016/j.foodcont.2012.01.027
-
(2012)
Food Control
, vol.26
, pp. 178-181
-
-
Xiong, T.1
Guan, Q.2
Song, S.3
Hao, M.4
Xie, M.5
-
63
-
-
7044274682
-
Screening of lactic acid bacteria from fermented vegetables by carbohydrate profiling and PCR-ELISA
-
Tamminen M, Joutsjoki T, Sjöblom M, Joutsen M, Palva A, Ryhänen E-L, Joutsjoki V. 2004. Screening of lactic acid bacteria from fermented vegetables by carbohydrate profiling and PCR-ELISA. Lett Appl Microbiol 39:439-444. https://doi.org/10.1111/j.1472-765X.2004.01607.x
-
(2004)
Lett Appl Microbiol
, vol.39
, pp. 439-444
-
-
Tamminen, M.1
Joutsjoki, T.2
Sjöblom, M.3
Joutsen, M.4
Palva, A.5
Ryhänen, E.-L.6
Joutsjoki, V.7
-
64
-
-
85059753645
-
Genus-wide assessment of antibiotic resistance in Lactobacillus spp
-
Campedelli I, Mathur H, Salvetti E, Clarke S, Rea MC, Torriani S, Ross RP, Hill C, O'Toole PW. 2018. Genus-wide assessment of antibiotic resistance in Lactobacillus spp. Appl Environ Microbiol 85:e01738-18
-
(2018)
Appl Environ Microbiol
, vol.85
-
-
Campedelli, I.1
Mathur, H.2
Salvetti, E.3
Clarke, S.4
Rea, M.C.5
Torriani, S.6
Ross, R.P.7
Hill, C.8
O'Toole, P.W.9
-
65
-
-
0025275170
-
Antimicrobial susceptibility of vancomycin-resistant Leuconostoc, Pediococcus, and Lactobacillus species
-
Swenson JM, Facklam RR, Thornsberry C. 1990. Antimicrobial susceptibility of vancomycin-resistant Leuconostoc, Pediococcus, and Lactobacillus species. Antimicrob Agents Chemother 34:543-549. https://doi.org/10.1128/AAC.34.4.543
-
(1990)
Antimicrob Agents Chemother
, vol.34
, pp. 543-549
-
-
Swenson, J.M.1
Facklam, R.R.2
Thornsberry, C.3
-
66
-
-
85016309249
-
From yogurt to yield: potential applications of lactic acid bacteria in plant production
-
Lamont JR, Wilkins O, Bywater-Ekegärd M, Smith DL. 2017. From yogurt to yield: potential applications of lactic acid bacteria in plant production. Soil Biol Biochem 111:1-9. https://doi.org/10.1016/j.soilbio.2017.03.015
-
(2017)
Soil Biol Biochem
, vol.111
, pp. 1-9
-
-
Lamont, J.R.1
Wilkins, O.2
Bywater-Ekegärd, M.3
Smith, D.L.4
-
67
-
-
0002399946
-
Microbial ecology of fermenting plant materials
-
Daeschel MA, Andersson RE, Fleming HP. 1987. Microbial ecology of fermenting plant materials. FEMS Microbiol Lett 46:357-367. https://doi .org/10.1111/j.1574-6968.1987.tb02472.x
-
(1987)
FEMS Microbiol Lett
, vol.46
, pp. 357-367
-
-
Daeschel, M.A.1
Andersson, R.E.2
Fleming, H.P.3
-
68
-
-
84922032916
-
Bacterial communities associated with surfaces of leafy greens: shift in composition and decrease in richness over time
-
Dees MW, Lysøe E, Nordskog B, Brurberg MB. 2015. Bacterial communities associated with surfaces of leafy greens: shift in composition and decrease in richness over time. Appl Environ Microbiol 81:1530-1539. https://doi.org/10.1128/AEM.03470-14
-
(2015)
Appl Environ Microbiol
, vol.81
, pp. 1530-1539
-
-
Dees, M.W.1
Lysøe, E.2
Nordskog, B.3
Brurberg, M.B.4
-
69
-
-
84949845730
-
Plasmids from the gut microbiome of cabbage root fly larvae encode SaxA that catalyses the conversion of the plant toxin 2-phenylethyl isothiocyanate
-
Welte CU, de Graaf RM, van den Bosch TJM, Op den Camp HJM, van Dam NM, Jetten M. 2016. Plasmids from the gut microbiome of cabbage root fly larvae encode SaxA that catalyses the conversion of the plant toxin 2-phenylethyl isothiocyanate. Environ Microbiol 18:1379-1390. https://doi.org/10.1111/1462-2920.12997
-
(2016)
Environ Microbiol
, vol.18
, pp. 1379-1390
-
-
Welte, C.U.1
de Graaf, R.M.2
van Den Bosch, T.J.M.3
Op Den Camp, H.J.M.4
van Dam, N.M.5
Jetten, M.6
-
70
-
-
84955140452
-
Pseudomonas syringae enhances herbivory by suppressing the reactive oxygen burst in Arabidopsis
-
Groen SC, Humphrey PT, Chevasco D, Ausubel FM, Pierce NE, Whiteman NK. 2016. Pseudomonas syringae enhances herbivory by suppressing the reactive oxygen burst in Arabidopsis. J Insect Physiol 84:90-102. https://doi.org/10.1016/j.jinsphys.2015.07.011
-
(2016)
J Insect Physiol
, vol.84
, pp. 90-102
-
-
Groen, S.C.1
Humphrey, P.T.2
Chevasco, D.3
Ausubel, F.M.4
Pierce, N.E.5
Whiteman, N.K.6
-
71
-
-
84931271480
-
Pivotal roles of phyllosphere microorganisms at the interface between plant functioning and atmospheric trace gas dynamics
-
Bringel F, Couée I. 2015. Pivotal roles of phyllosphere microorganisms at the interface between plant functioning and atmospheric trace gas dynamics. Front Microbiol 6:486. https://doi.org/10.3389/fmicb.2015 .00486
-
(2015)
Front Microbiol
, vol.6
, pp. 486
-
-
Bringel, F.1
Couée, I.2
-
72
-
-
0037394611
-
Microbiology of the phyllosphere
-
Lindow SE, Brandl MT. 2003. Microbiology of the phyllosphere. Appl Environ Microbiol 69:1875-1883. https://doi.org/10.1128/AEM.69.4.1875-1883.2003
-
(2003)
Appl Environ Microbiol
, vol.69
, pp. 1875-1883
-
-
Lindow, S.E.1
Brandl, M.T.2
-
73
-
-
19944379491
-
The role of pigmentation, ultraviolet radiation tolerance, and leaf colonization strategies in the epiphytic survival of phyllosphere bacteria
-
Jacobs JL, Carroll TL, Sundin GW. 2005. The role of pigmentation, ultraviolet radiation tolerance, and leaf colonization strategies in the epiphytic survival of phyllosphere bacteria. Microb Ecol 49:104-113. https://doi.org/10.1007/s00248-003-1061-4
-
(2005)
Microb Ecol
, vol.49
, pp. 104-113
-
-
Jacobs, J.L.1
Carroll, T.L.2
Sundin, G.W.3
-
74
-
-
0036964826
-
The lactic acid bacteria: a literature survey
-
Carr FJ, Chill D, Maida N. 2002. The lactic acid bacteria: a literature survey. Crit Rev Microbiol 28:281-370. https://doi.org/10.1080/1040-840291046759
-
(2002)
Crit Rev Microbiol
, vol.28
, pp. 281-370
-
-
Carr, F.J.1
Chill, D.2
Maida, N.3
-
75
-
-
84925163899
-
Ecology and exploration of the rare biosphere
-
Lynch MDJ, Neufeld JD. 2015. Ecology and exploration of the rare biosphere. Nat Rev Microbiol 13:217-229. https://doi.org/10.1038/nrmicro3400
-
(2015)
Nat Rev Microbiol
, vol.13
, pp. 217-229
-
-
Lynch, M.D.J.1
Neufeld, J.D.2
-
76
-
-
33747073504
-
Microbial diversity in the deep sea and the underexplored "rare biosphere."
-
Sogin ML, Morrison HG, Huber JA, Mark Welch D, Huse SM, Neal PR, Arrieta JM, Herndl GJ. 2006. Microbial diversity in the deep sea and the underexplored "rare biosphere." Proc Natl Acad Sci U S A 103: 12115-12120. https://doi.org/10.1073/pnas.0605127103
-
(2006)
Proc Natl Acad Sci U S A
, vol.103
, pp. 12115-12120
-
-
Sogin, M.L.1
Morrison, H.G.2
Huber, J.A.3
Mark Welch, D.4
Huse, S.M.5
Neal, P.R.6
Arrieta, J.M.7
Herndl, G.J.8
-
77
-
-
85009160062
-
Where less may be more: how the rare biosphere pulls ecosystems strings
-
Jousset A, Bienhold C, Chatzinotas A, Gallien L, Gobet A, Kurm V, Küsel K, Rillig MC, Rivett DW, Salles JF, van der Heijden MGA, Youssef NH, Zhang X, Wei Z, Hol W. 2017. Where less may be more: how the rare biosphere pulls ecosystems strings. ISME J 11:853-862. https://doi.org/10.1038/ismej.2016.174
-
(2017)
ISME J
, vol.11
, pp. 853-862
-
-
Jousset, A.1
Bienhold, C.2
Chatzinotas, A.3
Gallien, L.4
Gobet, A.5
Kurm, V.6
Küsel, K.7
Rillig, M.C.8
Rivett, D.W.9
Salles, J.F.10
van der Heijden, M.G.A.11
Youssef, N.H.12
Zhang, X.13
Wei, Z.14
Hol, W.15
-
78
-
-
84908264764
-
Conditionally rare taxa disproportionately contribute to temporal changes in microbial diversity
-
Shade A, Jones SE, Caporaso JG, Handelsman J, Knight R, Fierer N, Gilbert JA. 2014. Conditionally rare taxa disproportionately contribute to temporal changes in microbial diversity. mBio 5:e01371-14. https://doi.org/10.1128/mBio.01371-14
-
(2014)
mBio
, vol.5
-
-
Shade, A.1
Jones, S.E.2
Caporaso, J.G.3
Handelsman, J.4
Knight, R.5
Fierer, N.6
Gilbert, J.A.7
-
79
-
-
84937010736
-
Natural lactic acid bacteria population and silage fermentation of whole-crop wheat
-
Ni K, Wang Y, Cai Y, Pang H. 2015. Natural lactic acid bacteria population and silage fermentation of whole-crop wheat. Asian-Australas J Anim Sci 28:1123-1132. https://doi.org/10.5713/ajas.14.0955
-
(2015)
Asian-Australas J Anim Sci
, vol.28
, pp. 1123-1132
-
-
Ni, K.1
Wang, Y.2
Cai, Y.3
Pang, H.4
-
80
-
-
0035705734
-
Fermentation characteristics and aerobic stability of grass silage inoculated with Lactobacillus buchneri, with or without homofermentative lactic acid bacteria
-
Driehuis F, Oude Elferink S, Van Wikselaar PG. 2001. Fermentation characteristics and aerobic stability of grass silage inoculated with Lactobacillus buchneri, with or without homofermentative lactic acid bacteria. Grass Forage Sci 56:330-343. https://doi.org/10.1046/j.1365-2494.2001 .00282.x
-
(2001)
Grass Forage Sci
, vol.56
, pp. 330-343
-
-
Driehuis, F.1
Oude Elferink, S.2
van Wikselaar, P.G.3
-
81
-
-
76149111307
-
Occurrence of Pythium rot of Chinese cabbage in Egypt and its biocontrol measures
-
El-Mohamedy R, El-Mougy N. 2009. Occurrence of Pythium rot of Chinese cabbage in Egypt and its biocontrol measures. J Plant Protection Res 49:19
-
(2009)
J Plant Protection Res
, vol.49
, pp. 19
-
-
El-Mohamedy, R.1
El-Mougy, N.2
-
82
-
-
84955656202
-
Increased susceptibility to fungal disease accompanies adaptation to drought in Brassica rapa
-
O'Hara NB, Rest JS, Franks SJ. 2016. Increased susceptibility to fungal disease accompanies adaptation to drought in Brassica rapa. Evolution 70:241-248. https://doi.org/10.1111/evo.12833
-
(2016)
Evolution
, vol.70
, pp. 241-248
-
-
O'Hara, N.B.1
Rest, J.S.2
Franks, S.J.3
-
83
-
-
84987331173
-
The production of pink sauerkraut by yeasts
-
Fred EB, Peterson WH. 1922. The production of pink sauerkraut by yeasts. J Bacteriol 7:257-269
-
(1922)
J Bacteriol
, vol.7
, pp. 257-269
-
-
Fred, E.B.1
Peterson, W.H.2
-
84
-
-
79951624641
-
Microbiological spoilage of fruits and vegetables
-
In Sperber WH, Doyle MP (ed). Springer, New York, NY
-
Barth M, Hankinson TR, Zhuang H, Breidt F. 2009. Microbiological spoilage of fruits and vegetables, p 135-183. In Sperber WH, Doyle MP (ed), Compendium of the microbiological spoilage of foods and beverages. Springer, New York, NY
-
(2009)
Compendium of the microbiological spoilage of foods and beverages
, pp. 135-183
-
-
Barth, M.1
Hankinson, T.R.2
Zhuang, H.3
Breidt, F.4
-
85
-
-
85016090482
-
Simplified and representative bacterial community of maize roots
-
Niu B, Paulson JN, Zheng X, Kolter R. 2017. Simplified and representative bacterial community of maize roots. Proc Natl Acad Sci U S A 114: E2450-E2459. https://doi.org/10.1073/pnas.1616148114
-
(2017)
Proc Natl Acad Sci U S A
, vol.114
, pp. E2450-E2459
-
-
Niu, B.1
Paulson, J.N.2
Zheng, X.3
Kolter, R.4
-
86
-
-
85045437144
-
The impact of vegan production on the kimchi microbiome
-
Zabat MA, Sano WH, Cabral DJ, Wurster JI, Belenky P. 2018. The impact of vegan production on the kimchi microbiome. Food Microbiol 74: 171-178. https://doi.org/10.1016/j.fm.2018.04.001
-
(2018)
Food Microbiol
, vol.74
, pp. 171-178
-
-
Zabat, M.A.1
Sano, W.H.2
Cabral, D.J.3
Wurster, J.I.4
Belenky, P.5
-
87
-
-
79952005915
-
Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample
-
Caporaso JG, Lauber CL, Walters WA, Berg-Lyons D, Lozupone CA, Turnbaugh PJ, Fierer N, Knight R. 2011. Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample. Proc Natl Acad Sci U S A 108(Suppl 1):4516-4522. https://doi.org/10.1073/pnas.10000 80107
-
(2011)
Proc Natl Acad Sci U S A
, vol.108
, pp. 4516-4522
-
-
Caporaso, J.G.1
Lauber, C.L.2
Walters, W.A.3
Berg-Lyons, D.4
Lozupone, C.A.5
Turnbaugh, P.J.6
Fierer, N.7
Knight, R.8
-
88
-
-
77952243141
-
QIIME allows analysis of highthroughput community sequencing data
-
Gregory Caporaso J, Kuczynski J, Stombaugh J, Bittinger K, Bushman FD, Costello EK, Fierer N, Peña AG, Goodrich JK, Gordon JI, Huttley GA, Kelley ST, Knights D, Koenig JE, Ley RE, Lozupone CA, McDonald D, Muegge BD, Pirrung M, Reeder J, Sevinsky JR, Turnbaugh PJ, Walters WA, Widmann J, Yatsunenko T, Zaneveld J, Knight R. 2010. QIIME allows analysis of highthroughput community sequencing data. Nat Methods 7:335-336. https://doi.org/10.1038/nmeth.f.303
-
(2010)
Nat Methods
, vol.7
, pp. 335-336
-
-
Gregory Caporaso, J.1
Kuczynski, J.2
Stombaugh, J.3
Bittinger, K.4
Bushman, F.D.5
Costello, E.K.6
Fierer, N.7
Peña, A.G.8
Goodrich, J.K.9
Gordon, J.I.10
Huttley, G.A.11
Kelley, S.T.12
Knights, D.13
Koenig, J.E.14
Ley, R.E.15
Lozupone, C.A.16
McDonald, D.17
Muegge, B.D.18
Pirrung, M.19
Reeder, J.20
Sevinsky, J.R.21
Turnbaugh, P.J.22
Walters, W.A.23
Widmann, J.24
Yatsunenko, T.25
Zaneveld, J.26
Knight, R.27
more..
-
89
-
-
84884904719
-
UPARSE: highly accurate OTU sequences from microbial amplicon reads
-
Edgar RC. 2013. UPARSE: highly accurate OTU sequences from microbial amplicon reads. Nat Methods 10:996-998. https://doi.org/10.1038/nmeth .2604
-
(2013)
Nat Methods
, vol.10
, pp. 996-998
-
-
Edgar, R.C.1
-
90
-
-
84947614136
-
Contrasting taxonomic stratification of microbial communities in two hypersaline meromictic lakes
-
Andrei A-Ş, Robeson MS, II, Baricz A, Coman C, Muntean V, Ionescu A, Etiope G, Alexe M, Sicora CI, Podar M, Banciu HL. 2015. Contrasting taxonomic stratification of microbial communities in two hypersaline meromictic lakes. ISME J 9:2642-2656. https://doi.org/10.1038/ismej.2015.60
-
(2015)
ISME J
, vol.9
, pp. 2642-2656
-
-
Andrei, A.-S.1
Robeson, M.S.2
Baricz, A.3
Coman, C.4
Muntean, V.5
Ionescu, A.6
Etiope, G.7
Alexe, M.8
Sicora, C.I.9
Podar, M.10
Banciu, H.L.11
-
91
-
-
77957244650
-
Search and clustering orders of magnitude faster than BLAST
-
Edgar RC. 2010. Search and clustering orders of magnitude faster than BLAST. Bioinformatics 26:2460-2461. https://doi.org/10.1093/bioinformatics/btq461
-
(2010)
Bioinformatics
, vol.26
, pp. 2460-2461
-
-
Edgar, R.C.1
-
92
-
-
37549027613
-
SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB
-
Pruesse E, Quast C, Knittel K, Fuchs BM, Ludwig W, Peplies J, Glöckner FO. 2007. SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB. Nucleic Acids Res 35:7188-7196. https://doi.org/10.1093/nar/gkm864
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 7188-7196
-
-
Pruesse, E.1
Quast, C.2
Knittel, K.3
Fuchs, B.M.4
Ludwig, W.5
Peplies, J.6
Glöckner, F.O.7
-
93
-
-
0026067797
-
16S ribosomal DNA amplification for phylogenetic study
-
Weisburg WG, Barns SM, Pelletier DA, Lane DJ. 1991. 16S ribosomal DNA amplification for phylogenetic study. J Bacteriol 173:697-703. https://doi.org/10.1128/jb.173.2.697-703.1991
-
(1991)
J Bacteriol
, vol.173
, pp. 697-703
-
-
Weisburg, W.G.1
Barns, S.M.2
Pelletier, D.A.3
Lane, D.J.4
-
94
-
-
28444471613
-
Antibiotic resistance in food lactic acid bacteria: a review
-
Mathur S, Singh R. 2005. Antibiotic resistance in food lactic acid bacteria: a review. Int J Food Microbiol 105:281-295. https://doi.org/10.1016/j .ijfoodmicro.2005.03.008
-
(2005)
Int J Food Microbiol
, vol.105
, pp. 281-295
-
-
Mathur, S.1
Singh, R.2
|