-
1
-
-
0037394611
-
Microbiology of the phyllosphere
-
Lindow SE, Brandl MT. 2003. Microbiology of the phyllosphere. Appl Environ Microbiol 69:1875-1883. http://dx.doi.org/10.1128/AEM.69.4.1875-1883.2003.
-
(2003)
Appl Environ Microbiol
, vol.69
, pp. 1875-1883
-
-
Lindow, S.E.1
Brandl, M.T.2
-
2
-
-
0030614144
-
Microbial population dynamics on leaves
-
Kinkel LL. 1997. Microbial population dynamics on leaves. Annu Rev Phytopathol 35:327-347. http://dx.doi.org/10.1146/annurev.phyto.35.1.327.
-
(1997)
Annu Rev Phytopathol
, vol.35
, pp. 327-347
-
-
Kinkel, L.L.1
-
3
-
-
56649114468
-
Phyllosphere microbiology with special reference to diversity and plant genotype
-
Whipps JM, Hand P, Pink D, Bending GD. 2008. Phyllosphere microbiology with special reference to diversity and plant genotype. J Appl Microbiol 105:1744-1755. http://dx.doi.org/10.1111/j.1365-2672.2008.03906.x.
-
(2008)
J Appl Microbiol
, vol.105
, pp. 1744-1755
-
-
Whipps, J.M.1
Hand, P.2
Pink, D.3
Bending, G.D.4
-
4
-
-
23944495106
-
Metagenomics for studying unculturable microorganisms: cutting the Gordian knot
-
Schloss PD, Handelsman J. 2005. Metagenomics for studying unculturable microorganisms: cutting the Gordian knot. Genome Biol 6:1. http: //dx.doi.org/10.1186/gb-2005-6-8-229.
-
(2005)
Genome Biol
, vol.6
, pp. 1
-
-
Schloss, P.D.1
Handelsman, J.2
-
5
-
-
78650389722
-
Both leaf properties and microbe-microbe interactions influence within-species variation in bacterial population diversity and structure in the lettuce (Lactuca species) phyllosphere
-
Hunter PJ, Hand P, Pink D, Whipps JM, Bending GD. 2010. Both leaf properties and microbe-microbe interactions influence within-species variation in bacterial population diversity and structure in the lettuce (Lactuca species) phyllosphere. Appl Environ Microbiol 76:8117-8125. http://dx.doi.org/10.1128/AEM.01321-10.
-
(2010)
Appl Environ Microbiol
, vol.76
, pp. 8117-8125
-
-
Hunter, P.J.1
Hand, P.2
Pink, D.3
Whipps, J.M.4
Bending, G.D.5
-
6
-
-
48649083170
-
DGGE and real-time PCR analysis of lactic acid bacteria in bacterial communities of the phyllosphere of lettuce
-
Zwielehner J, Handschur M, Michaelsen A, Irez S, Demel M, Denner EB, Haslberger AG. 2008. DGGE and real-time PCR analysis of lactic acid bacteria in bacterial communities of the phyllosphere of lettuce. Mol Nutr Food Res 52:614-623. http://dx.doi.org/10.1002/mnfr.200700158.
-
(2008)
Mol Nutr Food Res
, vol.52
, pp. 614-623
-
-
Zwielehner, J.1
Handschur, M.2
Michaelsen, A.3
Irez, S.4
Demel, M.5
Denner, E.B.6
Haslberger, A.G.7
-
7
-
-
24644504109
-
Culture free DGGE and cloning based monitoring of changes in bacterial communities of salad due to processing
-
Handschur M, Pinar G, Gallist B, Lubitz W, Haslberger AG. 2005. Culture free DGGE and cloning based monitoring of changes in bacterial communities of salad due to processing. Food Chem Toxicol 43:1595- 1605. http://dx.doi.org/10.1016/j.fct.2005.05.009.
-
(2005)
Food Chem Toxicol
, vol.43
, pp. 1595- 1605
-
-
Handschur, M.1
Pinar, G.2
Gallist, B.3
Lubitz, W.4
Haslberger, A.G.5
-
8
-
-
67649223259
-
Bacterial succession on the leaf surface: a novel system for studying successional dynamics
-
Redford AJ, Fierer N. 2009. Bacterial succession on the leaf surface: a novel system for studying successional dynamics. Microb Ecol 58:189- 198. http://dx.doi.org/10.1007/s00248-009-9495-y.
-
(2009)
Microb Ecol
, vol.58
, pp. 189- 198
-
-
Redford, A.J.1
Fierer, N.2
-
9
-
-
0035957371
-
Microbial phyllosphere populations are more complex than previously realized
-
Yang CH, Crowley DE, Borneman J, Keen NT. 2001. Microbial phyllosphere populations are more complex than previously realized. Proc Natl Acad SciUSA98:3889-3894. http://dx.doi.org/10.1073/pnas.051633898.
-
(2001)
Proc Natl Acad SciUSA
, vol.98
, pp. 3889-3894
-
-
Yang, C.H.1
Crowley, D.E.2
Borneman, J.3
Keen, N.T.4
-
10
-
-
84885481609
-
New insights into the structure and function of phyllosphere microbiota through high-throughput molecular approaches
-
Rastogi G, Coaker GL, Leveau JHJ. 2013. New insights into the structure and function of phyllosphere microbiota through high-throughput molecular approaches. FEMS Microbiol Lett 348:1-10. http://dx.doi.org/10.1111/1574-6968.12225.
-
(2013)
FEMS Microbiol Lett
, vol.348
, pp. 1-10
-
-
Rastogi, G.1
Coaker, G.L.2
Leveau, J.H.J.3
-
11
-
-
84888342102
-
Culture dependent and independent analysis of bacterial communities associated with commercial salad leaf vegetables
-
Jackson C, Randolph K, Osborn S, Tyler H. 2013. Culture dependent and independent analysis of bacterial communities associated with commercial salad leaf vegetables. BMC Microbiol 13:274. http://dx.doi.org/10.1186/1471-2180-13-274.
-
(2013)
BMC Microbiol
, vol.13
, pp. 274
-
-
Jackson, C.1
Randolph, K.2
Osborn, S.3
Tyler, H.4
-
12
-
-
84875430559
-
Bacterial communities associated with the surfaces of fresh fruits and vegetables
-
Leff JW, Fierer N. 2013. Bacterial communities associated with the surfaces of fresh fruits and vegetables. PLoS One 8:e59310. http://dx.doi.org /10.1371/journal.pone.0059310.
-
(2013)
PLoS One
, vol.8
-
-
Leff, J.W.1
Fierer, N.2
-
13
-
-
79953739448
-
Changes in spinach phylloepiphytic bacteria communities following minimal processing and refrigerated storage described using pyrosequencing of 16S rRNA amplicons
-
Lopez-Velasco G, Welbaum GE, Boyer RR, Mane SP, Ponder MA. 2011. Changes in spinach phylloepiphytic bacteria communities following minimal processing and refrigerated storage described using pyrosequencing of 16S rRNA amplicons. J Appl Microbiol 110:1203-1214. http://dx.doi.org/10.1111/j.1365-2672.2011.04969.x.
-
(2011)
J Appl Microbiol
, vol.110
, pp. 1203-1214
-
-
Lopez-Velasco, G.1
Welbaum, G.E.2
Boyer, R.R.3
Mane, S.P.4
Ponder, M.A.5
-
14
-
-
84867745648
-
Leaf microbiota in an agroecosystem: spatiotemporal variation in bacterial community composition on field-grown lettuce
-
Rastogi G, Sbodio A, Tech JJ, Suslow TV, Coaker GL, Leveau JH. 2012. Leaf microbiota in an agroecosystem: spatiotemporal variation in bacterial community composition on field-grown lettuce. ISME J 6:1812-1822. http://dx.doi.org/10.1038/ismej.2012.32.
-
(2012)
ISME J
, vol.6
, pp. 1812-1822
-
-
Rastogi, G.1
Sbodio, A.2
Tech, J.J.3
Suslow, T.V.4
Coaker, G.L.5
Leveau, J.H.6
-
15
-
-
84879743032
-
Season, irrigation, leaf age, and Escherichia coli inoculation influence the bacterial diversity in the lettuce phyllosphere
-
Williams TR, Moyne AL, Harris LJ, Marco ML. 2013. Season, irrigation, leaf age, and Escherichia coli inoculation influence the bacterial diversity in the lettuce phyllosphere. PLoS One 8:e68642. http://dx.doi.org/10.1371 /journal.pone.0068642.
-
(2013)
PLoS One
, vol.8
-
-
Williams, T.R.1
Moyne, A.L.2
Harris, L.J.3
Marco, M.L.4
-
16
-
-
0027794346
-
Quantitative and qualitative seasonal changes in the microbial community from the phyllosphere of sugar beet (Beta vulgaris)
-
Thompson IP, Bailey MJ, Fenlon JS, Fermor TR, Lilley AK, Lynch JM, McCormack PJ, McQuilken MP, Purdy KJ, Rainey PB, Whipps JM. 1993. Quantitative and qualitative seasonal changes in the microbial community from the phyllosphere of sugar beet (Beta vulgaris). Plant Soil 150:177-191. http://dx.doi.org/10.1007/BF00013015.
-
(1993)
Plant Soil
, vol.150
, pp. 177-191
-
-
Thompson, I.P.1
Bailey, M.J.2
Fenlon, J.S.3
Fermor, T.R.4
Lilley, A.K.5
Lynch, J.M.6
McCormack, P.J.7
McQuilken, M.P.8
Purdy, K.J.9
Rainey, P.B.10
Whipps, J.M.11
-
17
-
-
84862162643
-
Summer season and long-term drought increase the richness of bacteria and fungi in the foliar phyllosphere of Quercus ilex in a mixed Mediterranean forest
-
Peñuelas J, Rico L, Ogaya R, Jump AS, Terradas J. 2012. Summer season and long-term drought increase the richness of bacteria and fungi in the foliar phyllosphere of Quercus ilex in a mixed Mediterranean forest. Plant Biol 14:565-575. http://dx.doi.org/10.1111/j.1438-8677.2011.00532.x.
-
(2012)
Plant Biol
, vol.14
, pp. 565-575
-
-
Peñuelas, J.1
Rico, L.2
Ogaya, R.3
Jump, A.S.4
Terradas, J.5
-
18
-
-
84859413300
-
Alterations to the phylloepiphytic bacterial community of spinach with leaf age
-
Tydings H, Lopez-Velasco G, Ponder M, Welbaum G. 2011. Alterations to the phylloepiphytic bacterial community of spinach with leaf age. Acta Hort 917:211-216.
-
(2011)
Acta Hort
, vol.917
, pp. 211-216
-
-
Tydings, H.1
Lopez-Velasco, G.2
Ponder, M.3
Welbaum, G.4
-
19
-
-
33747175722
-
Molecular analysis of fungal microbiota in samples from healthy human skin and psoriatic lesions
-
Paulino LC, Tseng CH, Strober BE, Blaser MJ. 2006. Molecular analysis of fungal microbiota in samples from healthy human skin and psoriatic lesions. J Clin Microbiol 44:2933-2941. http://dx.doi.org/10.1128/JCM.00785-06.
-
(2006)
J Clin Microbiol
, vol.44
, pp. 2933-2941
-
-
Paulino, L.C.1
Tseng, C.H.2
Strober, B.E.3
Blaser, M.J.4
-
20
-
-
0002912874
-
Application of denaturing gradient gel electrophoresis (DGGE) and temperature gradient gel electrophoresis (TGGE) for studying soil microbial communities
-
In van Elsas J, Trevors J, Wellington E (ed), Marcel Dekker, New York, NY.
-
Heuer H, Smalla K. 1997. Application of denaturing gradient gel electrophoresis (DGGE) and temperature gradient gel electrophoresis (TGGE) for studying soil microbial communities, p 353-373. In van Elsas J, Trevors J, Wellington E (ed), Modern soil microbiology. Marcel Dekker, New York, NY.
-
(1997)
Modern soil microbiology
, pp. 353-373
-
-
Heuer, H.1
Smalla, K.2
-
21
-
-
72949107142
-
Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities
-
Schloss PD, Westcott SL, Ryabin T, Hall JR, Hartmann M, Hollister EB, Lesniewski RA, Oakley BB, Parks DH, Robinson CJ, Sahl JW, Stres B, Thallinger GG, Van Horn DJ, Weber CF. 2009. Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl Environ Microbiol 75:7537-7541. http://dx.doi.org/10.1128/AEM.01541-09.
-
(2009)
Appl Environ Microbiol
, vol.75
, pp. 7537-7541
-
-
Schloss, P.D.1
Westcott, S.L.2
Ryabin, T.3
Hall, J.R.4
Hartmann, M.5
Hollister, E.B.6
Lesniewski, R.A.7
Oakley, B.B.8
Parks, D.H.9
Robinson, C.J.10
Sahl, J.W.11
Stres, B.12
Thallinger, G.G.13
Van Horn, D.J.14
Weber, C.F.15
-
22
-
-
84884251320
-
Development of a dual-index sequencing strategy and curation pipeline for analyzing amplicon sequence data on the MiSeq Illumina sequencing platform
-
Kozich JJ, Westcott SL, Baxter NT, Highlander SK, Schloss PD. 2013. Development of a dual-index sequencing strategy and curation pipeline for analyzing amplicon sequence data on the MiSeq Illumina sequencing platform. Appl Environ Microbiol 79:5112-5120. http://dx.doi.org/10.1128/AEM.01043-13.
-
(2013)
Appl Environ Microbiol
, vol.79
, pp. 5112-5120
-
-
Kozich, J.J.1
Westcott, S.L.2
Baxter, N.T.3
Highlander, S.K.4
Schloss, P.D.5
-
23
-
-
83355173006
-
Reducing the effects of PCR amplification and sequencing artifacts on 16S rRNA-based studies
-
Schloss PD, Gevers D, Westcott SL. 2011. Reducing the effects of PCR amplification and sequencing artifacts on 16S rRNA-based studies. PLoS One 6:e27310. http://dx.doi.org/10.1371/journal.pone.0027310.
-
(2011)
PLoS One
, vol.6
-
-
Schloss, P.D.1
Gevers, D.2
Westcott, S.L.3
-
24
-
-
79961181125
-
UCHIME improves sensitivity and speed of chimera detection
-
Edgar RC, Haas BJ, Clemente JC, Quince C, Knight R. 2011. UCHIME improves sensitivity and speed of chimera detection. Bioinformatics 27: 2194-2200. http://dx.doi.org/10.1093/bioinformatics/btr381.
-
(2011)
Bioinformatics
, vol.27
, pp. 2194-2200
-
-
Edgar, R.C.1
Haas, B.J.2
Clemente, J.C.3
Quince, C.4
Knight, R.5
-
25
-
-
58149200948
-
The Ribosomal Database Project: improved alignments and new tools for rRNA analysis
-
Database issue
-
Cole JR, Wang Q, Cardenas E, Fish J, Chai B, Farris RJ, Kulam-Syed- Mohideen AS, McGarrell DM, Marsh T, Garrity GM, Tiedje JM. 2009. The Ribosomal Database Project: improved alignments and new tools for rRNA analysis. Nucleic Acids Res 37(Database issue):D141-D145. http: //dx.doi.org/10.1093/nar/gkn879.
-
(2009)
Nucleic Acids Res
, vol.37
, pp. D141-D145
-
-
Cole, J.R.1
Wang, Q.2
Cardenas, E.3
Fish, J.4
Chai, B.5
Farris, R.J.6
Kulam-Syed-Mohideen, A.S.7
McGarrell, D.M.8
Marsh, T.9
Garrity, G.M.10
Tiedje, J.M.11
-
26
-
-
29144464937
-
UniFrac: a new phylogenetic method for comparing microbial communities
-
Lozupone C, Knight R. 2005. UniFrac: a new phylogenetic method for comparing microbial communities. Appl Environ Microbiol 71:8228- 8235. http://dx.doi.org/10.1128/AEM.71.12.8228-8235.2005.
-
(2005)
Appl Environ Microbiol
, vol.71
, pp. 8228- 8235
-
-
Lozupone, C.1
Knight, R.2
-
27
-
-
66249145772
-
Statistical methods for detecting differentially abundant features in clinical metagenomic samples
-
White JR, Nagarajan N, Pop M. 2009. Statistical methods for detecting differentially abundant features in clinical metagenomic samples. PLoS Comput Biol 5:10. http://dx.doi.org/10.1371/journal.pcbi.1000352.
-
(2009)
PLoS Comput Biol
, vol.5
, pp. 10
-
-
White, J.R.1
Nagarajan, N.2
Pop, M.3
-
28
-
-
79960004119
-
Interactive Tree Of Life v2: online annotation and display of phylogenetic trees made easy
-
Letunic I, Bork P. 2011. Interactive Tree Of Life v2: online annotation and display of phylogenetic trees made easy. Nucleic Acids Res 39:W475- W478. http://dx.doi.org/10.1093/nar/gkr201.
-
(2011)
Nucleic Acids Res
, vol.39
, pp. W475- W478
-
-
Letunic, I.1
Bork, P.2
-
29
-
-
84865179264
-
High-throughput bacterial genome sequencing: an embarrassment of choice, a world of opportunity
-
Loman NJ, Constantinidou C, Chan JZM, Halachev M, Sergeant M, Penn CW, Robinson ER, Pallen MJ. 2012. High-throughput bacterial genome sequencing: an embarrassment of choice, a world of opportunity. Nat Rev Microbiol 10:599-606. http://dx.doi.org/10.1038 /nrmicro2850.
-
(2012)
Nat Rev Microbiol
, vol.10
, pp. 599-606
-
-
Loman, N.J.1
Constantinidou, C.2
Chan, J.Z.M.3
Halachev, M.4
Sergeant, M.5
Penn, C.W.6
Robinson, E.R.7
Pallen, M.J.8
-
30
-
-
84877643132
-
Structure and functions of the bacterial microbi- ota of plants
-
Bulgarelli D, Schlaeppi K, Spaepen S, Ver Loren van Themaat E, Schulze-Lefert P. 2013. Structure and functions of the bacterial microbi- ota of plants. Annu Rev Plant Biol 64:807-838. http://dx.doi.org/10.1146 /annurev-arplant-050312-120106.
-
(2013)
Annu Rev Plant Biol
, vol.64
, pp. 807-838
-
-
Bulgarelli, D.1
Schlaeppi, K.2
Spaepen, S.3
Ver Loren van Themaat, E.4
Schulze-Lefert, P.5
-
31
-
-
78650677462
-
Annual and seasonal variation in the phyllosphere bacterial community associated with leaves of the southern magnolia (Magnolia grandiflora)
-
Jackson CR, Denney WC. 2011. Annual and seasonal variation in the phyllosphere bacterial community associated with leaves of the southern magnolia (Magnolia grandiflora). Microb Ecol 61:113-122. http://dx.doi.org/10.1007/s00248-010-9742-2.
-
(2011)
Microb Ecol
, vol.61
, pp. 113-122
-
-
Jackson, C.R.1
Denney, W.C.2
-
32
-
-
34548746905
-
Genomics of Actinobacteria: tracing the evolutionary history of an ancient phylum
-
Ventura M, Canchaya C, Tauch A, Chandra G, Fitzgerald GF, Chater KF, van Sinderen D. 2007. Genomics of Actinobacteria: tracing the evolutionary history of an ancient phylum. Microbiol Mol Biol Rev 71:495- 548. http://dx.doi.org/10.1128/MMBR.00005-07.
-
(2007)
Microbiol Mol Biol Rev
, vol.71
, pp. 495- 548
-
-
Ventura, M.1
Canchaya, C.2
Tauch, A.3
Chandra, G.4
Fitzgerald, G.F.5
Chater, K.F.6
van Sinderen, D.7
-
33
-
-
84903362470
-
Ecological succession and stochastic variation in the assembly of Arabidopsis thaliana phyllosphere communities
-
Maignien L, DeForce EA, Chafee ME, Eren AM, Simmons SL. 2014. Ecological succession and stochastic variation in the assembly of Arabidopsis thaliana phyllosphere communities. mBio 5(1):e00682-13. http: //dx.doi.org/10.1128/mBio.00682-13.
-
(2014)
mBio
, vol.5
, Issue.1
, pp. e00682-e00713
-
-
Maignien, L.1
DeForce, E.A.2
Chafee, M.E.3
Eren, A.M.4
Simmons, S.L.5
-
34
-
-
84866743046
-
Exploring biodiversity in the bacterial community of the Mediterranean phyllosphere and its relationship with airborne bacteria
-
Vokou D, Vareli K, Zarali E, Karamanoli K, Constantinidou HI, Monokrousos N, Halley JM, Sainis I. 2012. Exploring biodiversity in the bacterial community of the Mediterranean phyllosphere and its relationship with airborne bacteria. Microb Ecol 64:714-724. http://dx.doi.org/10.1007/s00248-012-0053-7.
-
(2012)
Microb Ecol
, vol.64
, pp. 714-724
-
-
Vokou, D.1
Vareli, K.2
Zarali, E.3
Karamanoli, K.4
Constantinidou, H.I.5
Monokrousos, N.6
Halley, J.M.7
Sainis, I.8
-
35
-
-
84908262674
-
Phyllosphere microbiota composition and microbial community transplantation on lettuce plants grown indoors
-
Williams TR, Marco ML. 2014. Phyllosphere microbiota composition and microbial community transplantation on lettuce plants grown indoors. mBio 5(4):e01564-14. http://dx.doi.org/10.1128/mBio.01564-14.
-
(2014)
mBio
, vol.5
, Issue.4
, pp. e01564-e01614
-
-
Williams, T.R.1
Marco, M.L.2
-
36
-
-
77957885485
-
The ecology of the phyllosphere: geographic and phylogenetic variability in the distribution of bacteria on tree leaves
-
Redford AJ, Bowers RM, Knight R, Linhart Y, Fierer N. 2010. The ecology of the phyllosphere: geographic and phylogenetic variability in the distribution of bacteria on tree leaves. Environ Microbiol 12:2885-2893. http://dx.doi.org/10.1111/j.1462-2920.2010.02258.x.
-
(2010)
Environ Microbiol
, vol.12
, pp. 2885-2893
-
-
Redford, A.J.1
Bowers, R.M.2
Knight, R.3
Linhart, Y.4
Fierer, N.5
-
37
-
-
79953742137
-
Culture-dependent and culture-independent assessment of bacteria in the apple phyllosphere
-
Yashiro E, Spear RN, McManus PS. 2011. Culture-dependent and culture-independent assessment of bacteria in the apple phyllosphere. J Appl Microbiol 110:1284 -1296. http://dx.doi.org/10.1111/j.1365 -2672.2011.04975.x.
-
(2011)
J Appl Microbiol
, vol.110
, pp. 1284 -1296
-
-
Yashiro, E.1
Spear, R.N.2
McManus, P.S.3
-
38
-
-
60849083234
-
Phylogeny and identification of Pantoea species and typing of Pantoea agglomerans strains by multilocus gene sequencing
-
Delétoile A, Decre D, Courant S, Passet V, Audo J, Grimont P, Arlet G, Brisse S. 2009. Phylogeny and identification of Pantoea species and typing of Pantoea agglomerans strains by multilocus gene sequencing. J Clin Microbiol 47:300-310. http://dx.doi.org/10.1128/JCM.01916-08.
-
(2009)
J Clin Microbiol
, vol.47
, pp. 300-310
-
-
Delétoile, A.1
Decre, D.2
Courant, S.3
Passet, V.4
Audo, J.5
Grimont, P.6
Arlet, G.7
Brisse, S.8
|