메뉴 건너뛰기




Volumn 4, Issue 11, 2010, Pages 1357-1365

Experimental tests of the bacterial distance-decay relationship

Author keywords

bacteria; community similarity; distance decay; natural microcosms; tree holes

Indexed keywords

BACTERIAL DNA;

EID: 77958492668     PISSN: 17517362     EISSN: 17517370     Source Type: Journal    
DOI: 10.1038/ismej.2010.77     Document Type: Article
Times cited : (191)

References (42)
  • 1
    • 0002154022 scopus 로고    scopus 로고
    • A new method for non-parametric multivariate analysis of variance
    • Anderson MJ. (2001). A new method for non-parametric multivariate analysis of variance. Austral Ecol 26: 32-46.
    • (2001) Austral Ecol , vol.26 , pp. 32-46
    • Anderson, M.J.1
  • 2
    • 0001930098 scopus 로고
    • Extraction of DNA from the phylosphere
    • Trevors J, van Elsas JD (eds)Springer-Verlag: Berlin
    • Bailey MJ. (1995). Extraction of DNA from the phylosphere. In: Trevors J, van Elsas JD (eds). Nucleic Acids in the Environment. Springer-Verlag: Berlin. pp 89-109.
    • (1995) Nucleic Acids in the Environment , pp. 89-109
    • Bailey, M.J.1
  • 3
    • 0035964859 scopus 로고    scopus 로고
    • Neutral macroecology
    • Bell G. (2001). Neutral macroecology. Science 293: 2413-2418.
    • (2001) Science , vol.293 , pp. 2413-2418
    • Bell, G.1
  • 5
    • 0037283733 scopus 로고    scopus 로고
    • An experimental test of local adaptation in soil bacteria
    • Belotte D, Curien JB, Maclean RC, Bell G. (2003). An experimental test of local adaptation in soil bacteria. Evolution 57: 27-36.
    • (2003) Evolution , vol.57 , pp. 27-36
    • Belotte, D.1    Curien, J.B.2    MacLean, R.C.3    Bell, G.4
  • 6
    • 34548235824 scopus 로고    scopus 로고
    • Interpreting ecological diversity indices applied to terminal restriction fragment length polymorphism data: Insights from simulated microbial communities
    • Blackwood CB, Hudleston D, Zak DR, Buyer JS. (2007). Interpreting ecological diversity indices applied to terminal restriction fragment length polymorphism data: insights from simulated microbial communities. Appl Environ Microbiol 73: 5276.
    • (2007) Appl Environ Microbiol , vol.73 , pp. 5276
    • Blackwood, C.B.1    Hudleston, D.2    Zak, D.R.3    Buyer, J.S.4
  • 7
    • 0027039362 scopus 로고
    • Resource limitation, habitat segregation, and species interactions of British tree-hole mosquitos in nature
    • Bradshaw WE, Holzapfel CM. (1992). Resource limitation, habitat segregation, and species interactions of British tree-hole mosquitos in nature. Oecologia 90: 227-237.
    • (1992) Oecologia , vol.90 , pp. 227-237
    • Bradshaw, W.E.1    Holzapfel, C.M.2
  • 8
    • 3042757014 scopus 로고    scopus 로고
    • Microcosm experiments have limited relevance for community and ecosystem ecology
    • Carpenter SR. (1996). Microcosm experiments have limited relevance for community and ecosystem ecology. Ecology 77: 677-680.
    • (1996) Ecology , vol.77 , pp. 677-680
    • Carpenter, S.R.1
  • 9
    • 0034467820 scopus 로고    scopus 로고
    • Biogeography and degree of endemicity of fluorescent Pseudomonas strains in soil
    • Cho J-C, Tiedje JM. (2000). Biogeography and degree of endemicity of fluorescent Pseudomonas strains in soil. Appl Environ Microbiol 66: 5448-5456.
    • (2000) Appl Environ Microbiol , vol.66 , pp. 5448-5456
    • Cho, J.-C.1    Tiedje, J.M.2
  • 10
    • 0027804103 scopus 로고
    • Non-parametric multivariate analyses of changes in community structure
    • Clarke KR. (1993). Non-parametric multivariate analyses of changes in community structure. Austral Ecol 18: 117-143.
    • (1993) Austral Ecol , vol.18 , pp. 117-143
    • Clarke, K.R.1
  • 11
    • 33947236971 scopus 로고    scopus 로고
    • Toward an ecological classification of soil bacteria
    • Fierer N, Bradford MA, Jackson RB. (2007). Toward an ecological classification of soil bacteria. Ecology 88: 1354-1364.
    • (2007) Ecology , vol.88 , pp. 1354-1364
    • Fierer, N.1    Bradford, M.A.2    Jackson, R.B.3
  • 12
    • 31444447130 scopus 로고    scopus 로고
    • The diversity and biogeography of soil bacterial communities
    • Fierer N, Jackson RB. (2006). The diversity and biogeography of soil bacterial communities. Proc Natl Acad Sci USA 103: 626-631.
    • (2006) Proc Natl Acad Sci USA , vol.103 , pp. 626-631
    • Fierer, N.1    Jackson, R.B.2
  • 13
    • 0037721460 scopus 로고    scopus 로고
    • Multi-scale variation in spatial heterogeneity for microbial community structure in an eastern Virginia agricultural field
    • Franklin RB, Mills AL. (2003). Multi-scale variation in spatial heterogeneity for microbial community structure in an eastern Virginia agricultural field. FEMS Microbiol Ecol 44: 335-346.
    • (2003) FEMS Microbiol Ecol , vol.44 , pp. 335-346
    • Franklin, R.B.1    Mills, A.L.2
  • 14
    • 33747174849 scopus 로고    scopus 로고
    • Spatial scaling of microbial biodiversity
    • Green J, Bohannan BJM. (2006). Spatial scaling of microbial biodiversity. Trends Ecol Evol 21: 501-507.
    • (2006) Trends Ecol Evol , vol.21 , pp. 501-507
    • Green, J.1    Bohannan, B.J.M.2
  • 19
    • 44449178480 scopus 로고    scopus 로고
    • Resource partitioning and sympatric differentiation among closely related bacterioplankton
    • Hunt DE, David LA, Gevers D, Preheim SP, Alm EJ, Polz MF. (2008). Resource partitioning and sympatric differentiation among closely related bacterioplankton. Science 320: 1081.
    • (2008) Science , vol.320 , pp. 1081
    • Hunt, D.E.1    David, L.A.2    Gevers, D.3    Preheim, S.P.4    Alm, E.J.5    Polz, M.F.6
  • 22
    • 0001421004 scopus 로고
    • An ecological study of water-filled tree-holes and their position in the woodland ecosystem
    • Kitching RL. (1971). An ecological study of water-filled tree-holes and their position in the woodland ecosystem. J Anim Ecol 40: 281.
    • (1971) J Anim Ecol , vol.40 , pp. 281
    • Kitching, R.L.1
  • 23
    • 0001857117 scopus 로고
    • 16S/23S rRNA sequencing
    • Stackebrandt ER, Goodfellow M (eds).John Wiley & Sons: Chichester, UK
    • Lane DL. (1991). 16S/23S rRNA sequencing. In: Stackebrandt ER, Goodfellow M (eds). Nucleic Acid Techniques in Bacterial Systematics. John Wiley & Sons: Chichester, UK, pp 115-175.
    • (1991) Nucleic Acid Techniques in Bacterial Systematics , pp. 115-175
    • Lane, D.L.1
  • 24
    • 0004170691 scopus 로고    scopus 로고
    • Elsevier Science: Amsterdam, Netherlands
    • Legendre L. (1998). Numerical Ecology. Elsevier Science: Amsterdam, Netherlands.
    • (1998) Numerical Ecology
    • Legendre, L.1
  • 25
    • 26944455121 scopus 로고    scopus 로고
    • Analyzing beta diversity: Partitioning the spatial variation of community composition data
    • Legendre P, Borcard D, Peres-Neto PR. (2005). Analyzing beta diversity: partitioning the spatial variation of community composition data. Ecol Monogr 75: 435-450.
    • (2005) Ecol Monogr , vol.75 , pp. 435-450
    • Legendre, P.1    Borcard, D.2    Peres-Neto, P.R.3
  • 26
    • 0030661563 scopus 로고    scopus 로고
    • Characterization of microbial diversity by determining terminal restriction fragment length polymorphisms of genes encoding 16S rRNA
    • Liu WT, Marsh TL, Cheng H, Forney LJ. (1997). Characterization of microbial diversity by determining terminal restriction fragment length polymorphisms of genes encoding 16S rRNA. Appl Environ Microbiol 63: 4516-4522.
    • (1997) Appl Environ Microbiol , vol.63 , pp. 4516-4522
    • Liu, W.T.1    Marsh, T.L.2    Cheng, H.3    Forney, L.J.4
  • 27
    • 0037225001 scopus 로고    scopus 로고
    • Evaluation of PCR amplification bias by terminal restriction fragment length polymorphism analysis of small-subunit rRNA and mcrA genes by using defined template mixtures of methanogenic pure cultures and soil DNA extracts
    • Lueders T, Friedrich MW. (2003). Evaluation of PCR amplification bias by terminal restriction fragment length polymorphism analysis of small-subunit rRNA and mcrA genes by using defined template mixtures of methanogenic pure cultures and soil DNA extracts. Appl Environ Microbiol 69: 320-326.
    • (2003) Appl Environ Microbiol , vol.69 , pp. 320-326
    • Lueders, T.1    Friedrich, M.W.2
  • 30
    • 49249106204 scopus 로고    scopus 로고
    • A general framework for the distance-decay of similarity in ecological communities
    • Morlon H, Chuyong G, Condit R, Hubbell S, Kenfack D, Thomas D et al. (2008). A general framework for the distance-decay of similarity in ecological communities. Ecol Lett 11: 904.
    • (2008) Ecol Lett , vol.11 , pp. 904
    • Morlon, H.1    Chuyong, G.2    Condit, R.3    Hubbell, S.4    Kenfack, D.5    Thomas, D.6
  • 31
    • 0033404204 scopus 로고    scopus 로고
    • The distance decay of similarity in biogeography and ecology
    • Nekola JC, White PS. (1999). The distance decay of similarity in biogeography and ecology. J Biogeogr 26: 867-878.
    • (1999) J Biogeogr , vol.26 , pp. 867-878
    • Nekola, J.C.1    White, P.S.2
  • 33
    • 33846914243 scopus 로고    scopus 로고
    • Global patterns of diversity and community structure in marine bacterioplankton
    • Pommier T, Canback B, Riemann L, Bostrom KH, Simu K, Lundberg P et al. (2007). Global patterns of diversity and community structure in marine bacterioplankton. Mol Ecol 16: 867-880.
    • (2007) Mol Ecol , vol.16 , pp. 867-880
    • Pommier, T.1    Canback, B.2    Riemann, L.3    Bostrom, K.H.4    Simu, K.5    Lundberg, P.6
  • 34
    • 33847318761 scopus 로고    scopus 로고
    • Multiscale responses of microbial life to spatial distance and environmental heterogeneity in a patchy ecosystem
    • Ramette A, Tiedje JM. (2007). Multiscale responses of microbial life to spatial distance and environmental heterogeneity in a patchy ecosystem. Proc Natl Acad Sci USA 104: 2761.
    • (2007) Proc Natl Acad Sci USA , vol.104 , pp. 2761
    • Ramette, A.1    Tiedje, J.M.2
  • 35
    • 64149130723 scopus 로고    scopus 로고
    • Bacterial'cosmopolitanism'and importance of local environmental factors for community composition in remote highaltitude lakes
    • Sommaruga R, Casamayor EO. (2009). Bacterial'cosmopolitanism'and importance of local environmental factors for community composition in remote highaltitude lakes. Freshw Biol 54: 994-1005.
    • (2009) Freshw Biol , vol.54 , pp. 994-1005
    • Sommaruga, R.1    Casamayor, E.O.2
  • 37
    • 0031669104 scopus 로고    scopus 로고
    • Why more productive sites have more species: An experimental test of theory using tree-hole communities
    • Srivastava DS, Lawton JH. (1998). Why more productive sites have more species: an experimental test of theory using tree-hole communities. Am Nat 152: 510-529.
    • (1998) Am Nat , vol.152 , pp. 510-529
    • Srivastava, D.S.1    Lawton, J.H.2
  • 38
    • 40349087151 scopus 로고    scopus 로고
    • Predicting prokaryotic ecological niches using genome sequence analysis
    • Suen G, Goldman BS, Welch RD. (2007). Predicting prokaryotic ecological niches using genome sequence analysis. PLoS ONE 2: e743.
    • (2007) PLoS ONE , vol.2
    • Suen, G.1    Goldman, B.S.2    Welch, R.D.3
  • 39
    • 38049100699 scopus 로고    scopus 로고
    • The power of species sorting: Local factors drive bacterial community composition over a wide range of spatial scales
    • Van der Gucht K, Cottenie K, Muylaert K, Vloemans N, Cousin S, Declerck S et al. (2007). The power of species sorting: Local factors drive bacterial community composition over a wide range of spatial scales. Proc Natl Acad Sci USA 104: 20404.
    • (2007) Proc Natl Acad Sci USA , vol.104 , pp. 20404
    • Van Der Gucht, K.1    Cottenie, K.2    Muylaert, K.3    Vloemans, N.4    Cousin, S.5    Declerck, S.6
  • 40
    • 68949202404 scopus 로고    scopus 로고
    • Local adaptation of bacteriophages to their bacterial hosts in soil
    • Vos M, Birkett PJ, Birch E, Griffiths RI, Buckling A. (2009). Local adaptation of bacteriophages to their bacterial hosts in soil. Science 325: 833.
    • (2009) Science , vol.325 , pp. 833
    • Vos, M.1    Birkett, P.J.2    Birch, E.3    Griffiths, R.I.4    Buckling, A.5
  • 41
    • 0042242559 scopus 로고    scopus 로고
    • Geographic barriers isolate endemic populations of hyperthermophilic archaea
    • Whitaker RJ, Grogan DW, Taylor JW. (2003). Geographic barriers isolate endemic populations of hyperthermophilic archaea. Science 301: 976-978.
    • (2003) Science , vol.301 , pp. 976-978
    • Whitaker, R.J.1    Grogan, D.W.2    Taylor, J.W.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.