메뉴 건너뛰기




Volumn 8, Issue 7, 2013, Pages

Season, Irrigation, Leaf Age, and Escherichia coli Inoculation Influence the Bacterial Diversity in the Lettuce Phyllosphere

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL RNA; RNA 16S;

EID: 84879743032     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0068642     Document Type: Article
Times cited : (134)

References (68)
  • 1
    • 0037394611 scopus 로고    scopus 로고
    • Microbiology of the phyllosphere
    • doi: 10.1128/AEM.69.4.1875-1883.2003
    • Lindow SE, Brandl MT, (2003) Microbiology of the phyllosphere. Appl Environ Microbiol 69: 1875-1883. doi:10.1128/AEM.69.4.1875-1883.2003. PubMed: 12676659.
    • (2003) Appl Environ Microbiol , vol.69 , pp. 1875-1883
    • Lindow, S.E.1    Brandl, M.T.2
  • 2
    • 0141959524 scopus 로고    scopus 로고
    • Fifty years of phyllosphere microbiology: significant contributions to research in related fields
    • Morris CEK, Kinkel LL, (2002) Fifty years of phyllosphere microbiology: significant contributions to research in related fields. In: Lindow SE, Hecht-Poinar EI, Elliott VJ, eds. Phyllosphere Microbiology. St. Paul, Minn: APS Press. pp. pp. 365-375.
    • (2002) Phyllosphere Microbiology , pp. 365-375
    • Lindow, S.E.1    Hecht-Poinar, E.I.2    Elliott, V.J.3
  • 3
    • 0033827553 scopus 로고    scopus 로고
    • Bacteria in the leaf ecosystem with emphasis on Pseudomonas syringae-a pathogen, ice nucleus, and epiphyte
    • doi: 10.1128/MMBR.64.3.624-653.2000
    • Hirano SS, Upper CD, (2000) Bacteria in the leaf ecosystem with emphasis on Pseudomonas syringae-a pathogen, ice nucleus, and epiphyte. Microbiol Mol Biol Rev 64: 624-653. doi:10.1128/MMBR.64.3.624-653.2000. PubMed: 10974129.
    • (2000) Microbiol Mol Biol Rev , vol.64 , pp. 624-653
    • Hirano, S.S.1    Upper, C.D.2
  • 4
    • 0035957371 scopus 로고    scopus 로고
    • Microbial phyllosphere populations are more complex than previously realized
    • doi: 10.1073/pnas.051633898
    • Yang CH, Crowley DE, Borneman J, Keen NT, (2001) Microbial phyllosphere populations are more complex than previously realized. Proc Natl Acad Sci U S A 98: 3889-3894. doi:10.1073/pnas.051633898. PubMed: 11274410.
    • (2001) Proc Natl Acad Sci U S A , vol.98 , pp. 3889-3894
    • Yang, C.H.1    Crowley, D.E.2    Borneman, J.3    Keen, N.T.4
  • 5
    • 70349481520 scopus 로고    scopus 로고
    • Community proteogenomics reveals insights into the physiology of phyllosphere bacteria
    • doi: 10.1073/pnas.0905240106
    • Delmotte N, Knief C, Chaffron S, Innerebner G, Roschitzki B, et al. (2009) Community proteogenomics reveals insights into the physiology of phyllosphere bacteria. Proc Natl Acad Sci U S A 106: 16428-16433. doi:10.1073/pnas.0905240106. PubMed: 19805315.
    • (2009) Proc Natl Acad Sci U S A , vol.106 , pp. 16428-16433
    • Delmotte, N.1    Knief, C.2    Chaffron, S.3    Innerebner, G.4    Roschitzki, B.5
  • 6
    • 70449469630 scopus 로고    scopus 로고
    • Persistence of Escherichia coli O157:H7 on the rhizosphere and phyllosphere of lettuce
    • doi: 10.1111/j.1472-765X.2009.02745.x
    • Mark Ibekwe A, Grieve CM, Papiernik SK, Yang CH, (2009) Persistence of Escherichia coli O157:H7 on the rhizosphere and phyllosphere of lettuce. Lett Appl Microbiol 49: 784-790. doi:10.1111/j.1472-765X.2009.02745.x. PubMed: 19843205.
    • (2009) Lett Appl Microbiol , vol.49 , pp. 784-790
    • Mark Ibekwe, A.1    Grieve, C.M.2    Papiernik, S.K.3    Yang, C.H.4
  • 7
    • 0037667121 scopus 로고    scopus 로고
    • Ultraviolet radiation alters maize phyllosphere bacterial diversity
    • doi: 10.1007/s00248-002-1065-5
    • Kadivar H, Stapleton AE, (2003) Ultraviolet radiation alters maize phyllosphere bacterial diversity. Microb Ecol 45: 353-361. doi:10.1007/s00248-002-1065-5. PubMed: 12704563.
    • (2003) Microb Ecol , vol.45 , pp. 353-361
    • Kadivar, H.1    Stapleton, A.E.2
  • 8
    • 79954571664 scopus 로고    scopus 로고
    • Bacterial community diversity and variation in spray water sources and the tomato fruit surface
    • doi: 10.1186/1471-2180-11-81
    • Telias A, White JR, Pahl DM, Ottesen AR, Walsh CS, (2011) Bacterial community diversity and variation in spray water sources and the tomato fruit surface. BMC Microbiol 11: 81. doi:10.1186/1471-2180-11-81. PubMed: 21510867.
    • (2011) BMC Microbiol , vol.11 , pp. 81
    • Telias, A.1    White, J.R.2    Pahl, D.M.3    Ottesen, A.R.4    Walsh, C.S.5
  • 9
    • 84862590329 scopus 로고    scopus 로고
    • Metaproteogenomic analysis of microbial communities in the phyllosphere and rhizosphere of rice
    • doi: 10.1038/ismej.2011.192
    • Knief C, Delmotte N, Chaffron S, Stark M, Innerebner G, et al. (2012) Metaproteogenomic analysis of microbial communities in the phyllosphere and rhizosphere of rice. ISME J 6: 1378-1390. doi:10.1038/ismej.2011.192. PubMed: 22189496.
    • (2012) ISME J , vol.6 , pp. 1378-1390
    • Knief, C.1    Delmotte, N.2    Chaffron, S.3    Stark, M.4    Innerebner, G.5
  • 10
    • 47249113002 scopus 로고    scopus 로고
    • Summer meeting 2007 - the problems with fresh produce: an overview
    • doi: 10.1111/j.1365-2672.2008.03746.x
    • Doyle MP, Erickson MC, (2008) Summer meeting 2007- the problems with fresh produce: an overview. J Appl Microbiol 105: 317-330. doi:10.1111/j.1365-2672.2008.03746.x. PubMed: 18284485.
    • (2008) J Appl Microbiol , vol.105 , pp. 317-330
    • Doyle, M.P.1    Erickson, M.C.2
  • 12
    • 80955166936 scopus 로고    scopus 로고
    • German outbreak of Escherichia coli O104:H4 associated with sprouts
    • doi: 10.1056/NEJMoa1106482
    • Buchholz U, Bernard H, Werber D, Böhmer MM, Remschmidt C, et al. (2011) German outbreak of Escherichia coli O104:H4 associated with sprouts. N Engl J Med 365: 1763-1770. doi:10.1056/NEJMoa1106482. PubMed: 22029753.
    • (2011) N Engl J Med , vol.365 , pp. 1763-1770
    • Buchholz, U.1    Bernard, H.2    Werber, D.3    Böhmer, M.M.4    Remschmidt, C.5
  • 13
    • 62349109578 scopus 로고    scopus 로고
    • Persistence of Escherichia coli on injured iceberg lettuce in the field, overhead irrigated with contaminated water
    • doi: 19343931
    • Barker-Reid F, Harapas D, Engleitner S, Kreidl S, Holmes R, et al. (2009) Persistence of Escherichia coli on injured iceberg lettuce in the field, overhead irrigated with contaminated water. J Food Prot 72: 458-464. PubMed: 19343931.
    • (2009) J Food Prot , vol.72 , pp. 458-464
    • Barker-Reid, F.1    Harapas, D.2    Engleitner, S.3    Kreidl, S.4    Holmes, R.5
  • 14
    • 3242682772 scopus 로고    scopus 로고
    • Persistence of enterohemorrhagic Escherichia coli O157:H7 in soil and on leaf lettuce and parsley grown in fields treated with contaminated manure composts or irrigation water
    • Islam M, Doyle MP, Phatak SC, Millner P, Jiang XP, (2004) Persistence of enterohemorrhagic Escherichia coli O157:H7 in soil and on leaf lettuce and parsley grown in fields treated with contaminated manure composts or irrigation water. J Food Protect 67: 1365-1370.
    • (2004) J Food Protect , vol.67 , pp. 1365-1370
    • Islam, M.1    Doyle, M.P.2    Phatak, S.C.3    Millner, P.4    Jiang, X.P.5
  • 15
    • 0018406871 scopus 로고
    • Differential survival of Salmonella typhi, Escherichia coli, and Enterobacter aerogenes on lettuce in the field
    • PubMed: 396737
    • Ercolani GL, (1979) Differential survival of Salmonella typhi, Escherichia coli, and Enterobacter aerogenes on lettuce in the field. Zentralbl Bakteriol Naturwiss 134: 402-411. PubMed: 396737.
    • (1979) Zentralbl Bakteriol Naturwiss , vol.134 , pp. 402-411
    • Ercolani, G.L.1
  • 16
    • 80052945230 scopus 로고    scopus 로고
    • Fate of Escherichia coli O157:H7 in field-inoculated lettuce
    • doi: 10.1016/j.fm.2011.02.001
    • Moyne AL, Sudarshana MR, Blessington T, Koike ST, Cahn MD, et al. (2011) Fate of Escherichia coli O157:H7 in field-inoculated lettuce. Food Microbiol 28: 1417-1425. doi:10.1016/j.fm.2011.02.001. PubMed: 21925023.
    • (2011) Food Microbiol , vol.28 , pp. 1417-1425
    • Moyne, A.L.1    Sudarshana, M.R.2    Blessington, T.3    Koike, S.T.4    Cahn, M.D.5
  • 17
    • 9444278421 scopus 로고    scopus 로고
    • A new route of transmission for Escherichia coli: Infection from dry fermented salami
    • doi: 10.2105/AJPH.86.8_Pt_1.1142
    • Tilden J, Young W, McNamara AM, Custer C, Boesel B, et al. (1996) A new route of transmission for Escherichia coli: Infection from dry fermented salami. Am J Public Health 86: 1142-1145. doi:10.2105/AJPH.86.8_Pt_1.1142. PubMed: 8712275.
    • (1996) Am J Public Health , vol.86 , pp. 1142-1145
    • Tilden, J.1    Young, W.2    McNamara, A.M.3    Custer, C.4    Boesel, B.5
  • 18
    • 0026398187 scopus 로고
    • The epidemiology of infections caused by Escherichia coli O157:H7, other enterohemorrhagic E. coli, and the associated hemolytic uremic syndrome
    • doi: 1765120
    • Griffin PM, Tauxe RV, (1991) The epidemiology of infections caused by Escherichia coli O157:H7, other enterohemorrhagic E. coli, and the associated hemolytic uremic syndrome. Epidemiol Rev 13: 60-98. PubMed: 1765120.
    • (1991) Epidemiol Rev , vol.13 , pp. 60-98
    • Griffin, P.M.1    Tauxe, R.V.2
  • 19
    • 81255153655 scopus 로고    scopus 로고
    • Survival and colonization of Escherichia coli O157:H7 on spinach leaves as affected by inoculum level and carrier, temperature and relative humidity
    • doi: 10.1111/j.1365-2672.2011.05175.x
    • Choi S, Bang J, Kim H, Beuchat LR, Ryu JH, (2011) Survival and colonization of Escherichia coli O157:H7 on spinach leaves as affected by inoculum level and carrier, temperature and relative humidity. J Appl Microbiol 111: 1465-1472. doi:10.1111/j.1365-2672.2011.05175.x. PubMed: 21988171.
    • (2011) J Appl Microbiol , vol.111 , pp. 1465-1472
    • Choi, S.1    Bang, J.2    Kim, H.3    Beuchat, L.R.4    Ryu, J.H.5
  • 20
    • 77951022718 scopus 로고    scopus 로고
    • Alterations of the phylloepiphytic bacterial community associated with interactions of Escherichia coli O157:H7 during storage of packaged spinach at refrigeration temperatures
    • doi: 10.1016/j.fm.2009.12.010
    • Lopez-Velasco G, Davis M, Boyer RR, Williams RC, Ponder MA, (2010) Alterations of the phylloepiphytic bacterial community associated with interactions of Escherichia coli O157:H7 during storage of packaged spinach at refrigeration temperatures. Food Microbiol 27: 476-486. doi:10.1016/j.fm.2009.12.010. PubMed: 20417396.
    • (2010) Food Microbiol , vol.27 , pp. 476-486
    • Lopez-Velasco, G.1    Davis, M.2    Boyer, R.R.3    Williams, R.C.4    Ponder, M.A.5
  • 21
    • 39149098750 scopus 로고    scopus 로고
    • Microbial contamination of fruit and vegetables and the behaviour of enteropathogens in the phyllosphere: a review
    • doi: 10.1111/j.1365-2672.2007.03587.x
    • Heaton JC, Jones K, (2008) Microbial contamination of fruit and vegetables and the behaviour of enteropathogens in the phyllosphere: a review. J Appl Microbiol 104: 613-626. doi:10.1111/j.1365-2672.2007.03587.x. PubMed: 17927745.
    • (2008) J Appl Microbiol , vol.104 , pp. 613-626
    • Heaton, J.C.1    Jones, K.2
  • 22
    • 33750525095 scopus 로고    scopus 로고
    • Escherichia Coli O157:H7 survival and growth on lettuce is altered by the presence of epiphytic bacteria
    • Cooley MB, Chao D, Mandrell RE, (2006). Escherichia Coli O157:H7 survival and growth on lettuce is altered by the presence of epiphytic bacteria. J Food Prot 69: 2329-2335.
    • (2006) J Food Prot , vol.69 , pp. 2329-2335
    • Cooley, M.B.1    Chao, D.2    Mandrell, R.E.3
  • 23
    • 0028173460 scopus 로고
    • Coexistence among epiphytic bacterial-populations mediated through nutritional resource partitioning
    • Wilson M, Lindow SE, (1994) Coexistence among epiphytic bacterial-populations mediated through nutritional resource partitioning. Appl Envion Microbiol 60: 4468-4477.
    • (1994) Appl Envion Microbiol , vol.60 , pp. 4468-4477
    • Wilson, M.1    Lindow, S.E.2
  • 24
    • 77952672792 scopus 로고    scopus 로고
    • Site and plant species are important determinants of the Methylobacterium community composition in the plant phyllosphere
    • doi: 10.1038/ismej.2010.9
    • Knief C, Ramette A, Frances L, Alonso-Blanco C, Vorholt JA, (2010) Site and plant species are important determinants of the Methylobacterium community composition in the plant phyllosphere. ISME J 4: 719-728. doi:10.1038/ismej.2010.9. PubMed: 20164863.
    • (2010) ISME J , vol.4 , pp. 719-728
    • Knief, C.1    Ramette, A.2    Frances, L.3    Alonso-Blanco, C.4    Vorholt, J.A.5
  • 25
    • 33745622402 scopus 로고    scopus 로고
    • Bacterial diversity in tree canopies of the Atlantic forest
    • doi: 10.1126/science.1124696
    • Lambais MR, Crowley DE, Cury JC, Büll RC, Rodrigues RR, (2006) Bacterial diversity in tree canopies of the Atlantic forest. Science 312: 1917-1917. doi:10.1126/science.1124696. PubMed: 16809531.
    • (2006) Science , vol.312 , pp. 1917
    • Lambais, M.R.1    Crowley, D.E.2    Cury, J.C.3    Büll, R.C.4    Rodrigues, R.R.5
  • 26
    • 33744472757 scopus 로고    scopus 로고
    • Variation of phyllosphere microflora of different rice varieties in Sri Lanka and its relationship to leaf anatomical and physiological characters
    • doi: 10.1111/j.1439-037X.2006.00207.x
    • De Costa DM, Rathnayake RMPS, De Costa WAJM, Kumari WMD, Dissanayake DMN, (2006) Variation of phyllosphere microflora of different rice varieties in Sri Lanka and its relationship to leaf anatomical and physiological characters. J Agron Crop Sci 192: 209-220. doi:10.1111/j.1439-037X.2006.00207.x.
    • (2006) J Agron Crop Sci , vol.192 , pp. 209-220
    • De Costa, D.M.1    Rathnayake, R.M.P.S.2    De Costa, W.A.J.M.3    Kumari, W.M.D.4    Dissanayake, D.M.N.5
  • 27
    • 0026553879 scopus 로고
    • Natamycin as a fungicide in agar media
    • doi: 16348667
    • Pedersen JC, (1992) Natamycin as a fungicide in agar media. Appl Environ Microbiol 58: 1064-1066. PubMed: 16348667.
    • (1992) Appl Environ Microbiol , vol.58 , pp. 1064-1066
    • Pedersen, J.C.1
  • 28
    • 4344619286 scopus 로고    scopus 로고
    • Application of a new PCR primer for terminal restriction fragment length polymorphism analysis of the bacterial communities in plant roots
    • doi: 10.1016/j.mimet.2004.06.005
    • Sakai M, Matsuka A, Komura T, Kanazawa S, (2004) Application of a new PCR primer for terminal restriction fragment length polymorphism analysis of the bacterial communities in plant roots. J Microbiol Methods 59: 81-89. doi:10.1016/j.mimet.2004.06.005. PubMed: 15325755.
    • (2004) J Microbiol Methods , vol.59 , pp. 81-89
    • Sakai, M.1    Matsuka, A.2    Komura, T.3    Kanazawa, S.4
  • 29
    • 0034964968 scopus 로고    scopus 로고
    • The diversity of archaea and bacteria in association with the roots of Zea mays L
    • doi: 11391463
    • Chelius MK, Triplett EW, (2001) The diversity of archaea and bacteria in association with the roots of Zea mays L. Microb Ecol 41: 252-263. PubMed: 11391463.
    • (2001) Microb Ecol , vol.41 , pp. 252-263
    • Chelius, M.K.1    Triplett, E.W.2
  • 30
    • 0001857117 scopus 로고
    • 16S/23S rRNA sequencing. Stackebrandt E GM
    • New York, John Wiley & Sons, editor
    • Lane D, (1991) 16S/23S rRNA sequencing. Stackebrandt E GM, editor. New York: John Wiley & Sons. Nucleic acid techniques in bacterial systematics. pp. 115-147.
    • (1991) Nucleic acid techniques in bacterial systematics , pp. 115-147
    • Lane, D.1
  • 31
    • 84867745648 scopus 로고    scopus 로고
    • Leaf microbiota in an agroecosystem: spatiotemporal variation in bacterial community composition on field-grown lettuce
    • Tech JJ, Suslow TV, Coaker GL
    • Rastogi G, Sbodio A, Tech JJ, Suslow TV, Coaker GL et al. (2012) Leaf microbiota in an agroecosystem: spatiotemporal variation in bacterial community composition on field-grown lettuce. ISME J 10: 1812-1822.
    • (2012) ISME J , vol.10 , pp. 1812-1822
    • Rastogi, G.1    Sbodio, A.2
  • 32
    • 77952243141 scopus 로고    scopus 로고
    • QIIME allows analysis of high-throughput community sequencing data
    • doi: 10.1038/nmeth.f.303
    • Caporaso JG, Kuczynski J, Stombaugh J, Bittinger K, Bushman FD, et al. (2010) QIIME allows analysis of high-throughput community sequencing data. Nat Methods 7: 335-336. doi:10.1038/nmeth.f.303. PubMed: 20383131.
    • (2010) Nat Methods , vol.7 , pp. 335-336
    • Caporaso, J.G.1    Kuczynski, J.2    Stombaugh, J.3    Bittinger, K.4    Bushman, F.D.5
  • 33
    • 33745634395 scopus 로고    scopus 로고
    • Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences
    • doi: 10.1093/bioinformatics/btl158
    • Li W, Godzik A, (2006) Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics 22: 1658-1659. doi:10.1093/bioinformatics/btl158. PubMed: 16731699.
    • (2006) Bioinformatics , vol.22 , pp. 1658-1659
    • Li, W.1    Godzik, A.2
  • 34
    • 75249107844 scopus 로고    scopus 로고
    • PyNAST: a flexible tool for aligning sequences to a template alignment
    • doi: 10.1093/bioinformatics/btp636
    • Caporaso JG, Bittinger K, Bushman FD, DeSantis TZ, Andersen GL, et al. (2010) PyNAST: a flexible tool for aligning sequences to a template alignment. Bioinformatics 26: 266-267. doi:10.1093/bioinformatics/btp636. PubMed: 19914921.
    • (2010) Bioinformatics , vol.26 , pp. 266-267
    • Caporaso, J.G.1    Bittinger, K.2    Bushman, F.D.3    DeSantis, T.Z.4    Andersen, G.L.5
  • 35
    • 77949718257 scopus 로고    scopus 로고
    • FastTree 2--approximately maximum-likelihood trees for large alignments
    • doi: 10.1371/journal.pone.0009490
    • Price MN, Dehal PS, Arkin AP, (2010) FastTree 2--approximately maximum-likelihood trees for large alignments. PLOS ONE 5(3):: e9490. doi:10.1371/journal.pone.0009490. PubMed: 20224823.
    • (2010) PLOS ONE , vol.5
    • Price, M.N.1    Dehal, P.S.2    Arkin, A.P.3
  • 36
    • 79952006773 scopus 로고    scopus 로고
    • Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons
    • doi: 10.1101/gr.112730.110
    • Haas BJ, Gevers D, Earl AM, Feldgarden M, Ward DV, et al. (2011) Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons. Genome Res 21: 494-504. doi:10.1101/gr.112730.110. PubMed: 21212162.
    • (2011) Genome Res , vol.21 , pp. 494-504
    • Haas, B.J.1    Gevers, D.2    Earl, A.M.3    Feldgarden, M.4    Ward, D.V.5
  • 37
    • 58149200948 scopus 로고    scopus 로고
    • The Ribosomal Database Project: improved alignments and new tools for rRNA analysis
    • doi: 10.1093/nar/gkp353
    • Cole JR, Wang Q, Cardenas E, Fish J, Chai B, et al. (2009) The Ribosomal Database Project: improved alignments and new tools for rRNA analysis. Nucleic Acids Res 37: 141-145. doi:10.1093/nar/gkp353. PubMed: 19004872.
    • (2009) Nucleic Acids Res , vol.37 , pp. 141-145
    • Cole, J.R.1    Wang, Q.2    Cardenas, E.3    Fish, J.4    Chai, B.5
  • 38
    • 0026499429 scopus 로고
    • Conservation evaluation and phylogenetic diversity
    • doi: 10.1016/0006-3207(92)91201-3
    • Faith DP, (1992) Conservation evaluation and phylogenetic diversity. Biol Conserv 61: 1-10. doi:10.1016/0006-3207(92)91201-3.
    • (1992) Biol Conserv , vol.61 , pp. 1-10
    • Faith, D.P.1
  • 39
    • 33748713890 scopus 로고    scopus 로고
    • UniFrac - An online tool for comparing microbial community diversity in a phylogenetic context
    • Lozupone C, Hamady M, Knight R, (2006) UniFrac- An online tool for comparing microbial community diversity in a phylogenetic context. BMC Bioinformatics 7.
    • (2006) BMC Bioinformatics , vol.7
    • Lozupone, C.1    Hamady, M.2    Knight, R.3
  • 40
    • 0002051540 scopus 로고    scopus 로고
    • BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT
    • Ta H, (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucl Acids Symp Ser 41: 95-98.
    • (1999) Nucl Acids Symp Ser , vol.41 , pp. 95-98
    • Ta, H.1
  • 41
    • 77957864362 scopus 로고    scopus 로고
    • A PCR-based toolbox for the culture-independent quantification of total bacterial abundances in plant environments
    • doi: 10.1016/j.mimet.2010.08.006
    • Rastogi G, Tech JJ, Coaker GL, Leveau JH (2010) A PCR-based toolbox for the culture-independent quantification of total bacterial abundances in plant environments. J Microbiol Methods 83: 127-132. doi:10.1016/j.mimet.2010.08.006. PubMed: 20816905.
    • (2010) J Microbiol Methods , vol.83 , pp. 127-132
    • Rastogi, G.1    Tech, J.J.2    Coaker, G.L.3    Leveau, J.H.4
  • 42
    • 50949131523 scopus 로고    scopus 로고
    • Comparative analysis of human gut microbiota by barcoded pyrosequencing
    • doi: 10.1371/journal.pone.0002836
    • Andersson AF, Lindberg M, Jakobsson H, Bäckhed F, Nyrén P, et al. (2008) Comparative analysis of human gut microbiota by barcoded pyrosequencing. PLOS ONE 3(7):: e2836. doi:10.1371/journal.pone.0002836. PubMed: 18665274.
    • (2008) PLOS ONE , vol.3
    • Andersson, A.F.1    Lindberg, M.2    Jakobsson, H.3    Bäckhed, F.4    Nyrén, P.5
  • 43
    • 58749112734 scopus 로고    scopus 로고
    • A core gut microbiome in obese and lean twins
    • doi: 10.1038/nature07540
    • Turnbaugh PJ, Hamady M, Yatsunenko T, Cantarel BL, Duncan A, et al. (2009) A core gut microbiome in obese and lean twins. Nature 457: 480-487. doi:10.1038/nature07540. PubMed: 19043404.
    • (2009) Nature , vol.457 , pp. 480-487
    • Turnbaugh, P.J.1    Hamady, M.2    Yatsunenko, T.3    Cantarel, B.L.4    Duncan, A.5
  • 44
    • 33747073504 scopus 로고    scopus 로고
    • Microbial diversity in the deep sea and the underexplored "rare biosphere"
    • doi: 10.1073/pnas.0605127103
    • Sogin ML, Morrison HG, Huber JA, Mark Welch D, Huse SM, et al. (2006) Microbial diversity in the deep sea and the underexplored "rare biosphere" Proc Natl Acad Sci U S A 103: 12115-12120. doi:10.1073/pnas.0605127103. PubMed: 16880384.
    • (2006) Proc Natl Acad Sci U S A , vol.103 , pp. 12115-12120
    • Sogin, M.L.1    Morrison, H.G.2    Huber, J.A.3    Mark Welch, D.4    Huse, S.M.5
  • 45
    • 34547800097 scopus 로고    scopus 로고
    • Pyrosequencing enumerates and contrasts soil microbial diversity
    • doi: 18043639
    • Roesch LF, Fulthorpe RR, Riva A, Casella G, Hadwin AK, et al. (2007) Pyrosequencing enumerates and contrasts soil microbial diversity. ISME J 1: 283-290. PubMed: 18043639.
    • (2007) ISME J , vol.1 , pp. 283-290
    • Roesch, L.F.1    Fulthorpe, R.R.2    Riva, A.3    Casella, G.4    Hadwin, A.K.5
  • 46
    • 35148888609 scopus 로고    scopus 로고
    • Microbial population structures in the deep marine biosphere
    • doi: 10.1126/science.1146689
    • Huber JA, Mark Welch DB, Morrison HG, Huse SM, Neal PR, et al. (2007) Microbial population structures in the deep marine biosphere. Science 318: 97-100. doi:10.1126/science.1146689. PubMed: 17916733.
    • (2007) Science , vol.318 , pp. 97-100
    • Huber, J.A.1    Mark Welch, D.B.2    Morrison, H.G.3    Huse, S.M.4    Neal, P.R.5
  • 47
    • 79953739448 scopus 로고    scopus 로고
    • Changes in spinach phylloepiphytic bacteria communities following minimal processing and refrigerated storage described using pyrosequencing of 16S rRNA amplicons
    • doi: 10.1111/j.1365-2672.2011.04969.x
    • Lopez-Velasco G, Welbaum GE, Boyer RR, Mane SP, Ponder MA, (2011) Changes in spinach phylloepiphytic bacteria communities following minimal processing and refrigerated storage described using pyrosequencing of 16S rRNA amplicons. J Appl Microbiol 110: 1203-1214. doi:10.1111/j.1365-2672.2011.04969.x. PubMed: 21371219.
    • (2011) J Appl Microbiol , vol.110 , pp. 1203-1214
    • Lopez-Velasco, G.1    Welbaum, G.E.2    Boyer, R.R.3    Mane, S.P.4    Ponder, M.A.5
  • 48
    • 77957885485 scopus 로고    scopus 로고
    • The ecology of the phyllosphere: geographic and phylogenetic variability in the distribution of bacteria on tree leaves
    • doi: 10.1111/j.1462-2920.2010.02258.x
    • Redford AJ, Bowers RM, Knight R, Linhart Y, Fierer N, (2010) The ecology of the phyllosphere: geographic and phylogenetic variability in the distribution of bacteria on tree leaves. Environ Microbiol 12: 2885-2893. doi:10.1111/j.1462-2920.2010.02258.x. PubMed: 20545741.
    • (2010) Environ Microbiol , vol.12 , pp. 2885-2893
    • Redford, A.J.1    Bowers, R.M.2    Knight, R.3    Linhart, Y.4    Fierer, N.5
  • 49
    • 84857916034 scopus 로고    scopus 로고
    • Phyllosphere bacterial communities of trichome-bearing and trichomeless Arabidopsis thaliana leaves
    • PubMed: 22080429
    • Reisberg EE, Hildebrandt U, Riederer M, Hentschel U, (2011) Phyllosphere bacterial communities of trichome-bearing and trichomeless Arabidopsis thaliana leaves. Antonie Van Leeuwenhoek 101(3):: 551-560. PubMed: 22080429.
    • (2011) Antonie Van Leeuwenhoek , vol.101 , pp. 551-560
    • Reisberg, E.E.1    Hildebrandt, U.2    Riederer, M.3    Hentschel, U.4
  • 50
    • 56649114468 scopus 로고    scopus 로고
    • Phyllosphere microbiology with special reference to diversity and plant genotype
    • doi: 10.1111/j.1365-2672.2008.03906.x
    • Whipps JM, Hand P, Pink D, Bending GD, (2008) Phyllosphere microbiology with special reference to diversity and plant genotype. J Appl Microbiol 105: 1744-1755. doi:10.1111/j.1365-2672.2008.03906.x. PubMed: 19120625.
    • (2008) J Appl Microbiol , vol.105 , pp. 1744-1755
    • Whipps, J.M.1    Hand, P.2    Pink, D.3    Bending, G.D.4
  • 51
    • 48649083170 scopus 로고    scopus 로고
    • DGGE and real-time PCR analysis of lactic acid bacteria in bacterial communities of the phyllosphere of lettuce
    • doi: 10.1002/mnfr.200700158
    • Zwielehner J, Handschur M, Michaelsen A, Irez S, Demel M, et al. (2008) DGGE and real-time PCR analysis of lactic acid bacteria in bacterial communities of the phyllosphere of lettuce. Mol Nutr Food Res 52: 614-623. doi:10.1002/mnfr.200700158. PubMed: 18398868.
    • (2008) Mol Nutr Food Res , vol.52 , pp. 614-623
    • Zwielehner, J.1    Handschur, M.2    Michaelsen, A.3    Irez, S.4    Demel, M.5
  • 52
    • 78650389722 scopus 로고    scopus 로고
    • Both leaf properties and microbe-microbe interactions influence within-species variation in bacterial population diversity and structure in the lettuce (Lactuca species) phyllosphere
    • doi: 10.1128/AEM.01321-10
    • Hunter PJ, Hand P, Pink D, Whipps JM, Bending GD, (2010) Both leaf properties and microbe-microbe interactions influence within-species variation in bacterial population diversity and structure in the lettuce (Lactuca species) phyllosphere. Appl Environ Microbiol 76: 8117-8125. doi:10.1128/AEM.01321-10. PubMed: 20952648.
    • (2010) Appl Environ Microbiol , vol.76 , pp. 8117-8125
    • Hunter, P.J.1    Hand, P.2    Pink, D.3    Whipps, J.M.4    Bending, G.D.5
  • 53
    • 79951509848 scopus 로고    scopus 로고
    • The effects from DNA extraction methods on the evaluation of microbial diversity associated with human colonic tissue
    • doi: 10.1007/s00248-010-9771-x
    • Ó Cuív P, Aguirre de Cárcer D, Jones M, Klaassens ES, Worthley DL, et al. (2011) The effects from DNA extraction methods on the evaluation of microbial diversity associated with human colonic tissue. Microb Ecol 61: 353-362. doi:10.1007/s00248-010-9771-x. PubMed: 21153634.
    • (2011) Microb Ecol , vol.61 , pp. 353-362
    • Ó Cuív, P.1    Aguirre de Cárcer, D.2    Jones, M.3    Klaassens, E.S.4    Worthley, D.L.5
  • 54
    • 79955812835 scopus 로고    scopus 로고
    • Optimising bacterial DNA extraction from faecal samples: Comparison of three methods
    • doi: 10.2174/1874285801105010014
    • Smith B, Li N, Andersen AS, Slotved HC, Krogfelt KA, (2011) Optimising bacterial DNA extraction from faecal samples: Comparison of three methods. Open Microbiol J 5: 14-17. doi:10.2174/1874285801105010014. PubMed: 21643498.
    • (2011) Open Microbiol J , vol.5 , pp. 14-17
    • Smith, B.1    Li, N.2    Andersen, A.S.3    Slotved, H.C.4    Krogfelt, K.A.5
  • 55
    • 77955067191 scopus 로고    scopus 로고
    • Sampling and pyrosequencing methods for characterizing bacterial communities in the human gut using 16S sequence tags
    • doi: 10.1186/1471-2180-10-206
    • Wu GD, Lewis JD, Hoffmann C, Chen YY, Knight R, et al. (2010) Sampling and pyrosequencing methods for characterizing bacterial communities in the human gut using 16S sequence tags. BMC Microbiol 10: 206. doi:10.1186/1471-2180-10-206. PubMed: 20673359.
    • (2010) BMC Microbiol , vol.10 , pp. 206
    • Wu, G.D.1    Lewis, J.D.2    Hoffmann, C.3    Chen, Y.Y.4    Knight, R.5
  • 56
    • 84863292680 scopus 로고    scopus 로고
    • Deep sequencing analyses of low density microbial communities: working at the boundary of accurate microbiota detection
    • doi: 10.1371/journal.pone.0032942
    • Biesbroek G, Sanders EA, Roeselers G, Wang X, Caspers MP, et al. (2012) Deep sequencing analyses of low density microbial communities: working at the boundary of accurate microbiota detection. PLOS ONE 7(3):: e32942. doi:10.1371/journal.pone.0032942. PubMed: 22412957.
    • (2012) PLOS ONE , vol.7
    • Biesbroek, G.1    Sanders, E.A.2    Roeselers, G.3    Wang, X.4    Caspers, M.P.5
  • 57
    • 73349110099 scopus 로고    scopus 로고
    • Wrinkles in the rare biosphere: pyrosequencing errors can lead to artificial inflation of diversity estimates
    • doi: 10.1111/j.1462-2920.2009.02051.x
    • Kunin V, Engelbrektson A, Ochman H, Hugenholtz P, (2010) Wrinkles in the rare biosphere: pyrosequencing errors can lead to artificial inflation of diversity estimates. Environ Microbiol 12: 118-123. doi:10.1111/j.1462-2920.2009.02051.x. PubMed: 19725865.
    • (2010) Environ Microbiol , vol.12 , pp. 118-123
    • Kunin, V.1    Engelbrektson, A.2    Ochman, H.3    Hugenholtz, P.4
  • 58
    • 78650677462 scopus 로고    scopus 로고
    • Annual and seasonal variation in the phyllosphere bacterial community associated with leaves of the southern Magnolia (Magnolia grandiflora)
    • doi: 10.1007/s00248-010-9742-2
    • Jackson CR, Denney WC, (2011) Annual and seasonal variation in the phyllosphere bacterial community associated with leaves of the southern Magnolia (Magnolia grandiflora). Microb Ecol 61: 113-122. doi:10.1007/s00248-010-9742-2. PubMed: 20809288.
    • (2011) Microb Ecol , vol.61 , pp. 113-122
    • Jackson, C.R.1    Denney, W.C.2
  • 59
    • 67649223259 scopus 로고    scopus 로고
    • Bacterial succession on the leaf surface: A novel system for studying successional dynamics
    • doi: 10.1007/s00248-009-9495-y
    • Redford AJ, Fierer N, (2009) Bacterial succession on the leaf surface: A novel system for studying successional dynamics. Microb Ecol 58: 189-198. doi:10.1007/s00248-009-9495-y. PubMed: 19221834.
    • (2009) Microb Ecol , vol.58 , pp. 189-198
    • Redford, A.J.1    Fierer, N.2
  • 60
    • 73349112606 scopus 로고    scopus 로고
    • Linking microbial community structure and function to seasonal differences in soil moisture and temperature in a Chihuahuan desert grassland
    • doi: 10.1007/s00248-009-9529-5
    • Bell CW, Acosta-Martinez V, McIntyre NE, Cox S, Tissue DT, et al. (2009) Linking microbial community structure and function to seasonal differences in soil moisture and temperature in a Chihuahuan desert grassland. Microb Ecol 58: 827-842. doi:10.1007/s00248-009-9529-5. PubMed: 19466479.
    • (2009) Microb Ecol , vol.58 , pp. 827-842
    • Bell, C.W.1    Acosta-Martinez, V.2    McIntyre, N.E.3    Cox, S.4    Tissue, D.T.5
  • 61
    • 2442709377 scopus 로고    scopus 로고
    • Seasonal changes in an alpine soil bacterial community in the Colorado Rocky Mountains
    • doi: 10.1128/AEM.70.5.2867-2879.2004
    • Lipson DA, Schmidt SK, (2004) Seasonal changes in an alpine soil bacterial community in the Colorado Rocky Mountains. Appl Envion Microbiol 70: 2867-2879. doi:10.1128/AEM.70.5.2867-2879.2004.
    • (2004) Appl Envion Microbiol , vol.70 , pp. 2867-2879
    • Lipson, D.A.1    Schmidt, S.K.2
  • 62
    • 84856628838 scopus 로고    scopus 로고
    • Seasonal variability in airborne bacterial communities at a high-elevation site
    • doi: 10.1016/j.atmosenv.2012.01.005
    • Bowers RM, McCubbin IB, Hallar AG, Fierer N, (2012) Seasonal variability in airborne bacterial communities at a high-elevation site. Atmos Environ 50: 41-49. doi:10.1016/j.atmosenv.2012.01.005.
    • (2012) Atmos Environ , vol.50 , pp. 41-49
    • Bowers, R.M.1    McCubbin, I.B.2    Hallar, A.G.3    Fierer, N.4
  • 63
    • 83155163706 scopus 로고    scopus 로고
    • Geographical location determines the population structure in phyllosphere microbial communities of a salt-excreting desert tree
    • doi: 10.1128/AEM.05565-11
    • Finkel OM, Burch AY, Lindow SE, Post AF, Belkin S, (2011) Geographical location determines the population structure in phyllosphere microbial communities of a salt-excreting desert tree. Appl Envion Microbiol 77: 7647-7655. doi:10.1128/AEM.05565-11.
    • (2011) Appl Envion Microbiol , vol.77 , pp. 7647-7655
    • Finkel, O.M.1    Burch, A.Y.2    Lindow, S.E.3    Post, A.F.4    Belkin, S.5
  • 64
    • 77749260566 scopus 로고    scopus 로고
    • The carnivorous pale pitcher plant harbors diverse, distinct, and time-dependent bacterial communities
    • doi: 10.1128/AEM.02440-09
    • Koopman MM, Fuselier DM, Hird S, Carstens BC, (2010) The carnivorous pale pitcher plant harbors diverse, distinct, and time-dependent bacterial communities. Appl Environ Microbiol 76: 1851-1860. doi:10.1128/AEM.02440-09. PubMed: 20097807.
    • (2010) Appl Environ Microbiol , vol.76 , pp. 1851-1860
    • Koopman, M.M.1    Fuselier, D.M.2    Hird, S.3    Carstens, B.C.4
  • 65
    • 0001031561 scopus 로고
    • Diel variation in population-size and ice nucleation activity of Pseudomonas syringae on snap bean leaflets
    • Hirano SS, Upper CD, (1989) Diel variation in population-size and ice nucleation activity of Pseudomonas syringae on snap bean leaflets. Appl Envion Microbiol 55: 623-630.
    • (1989) Appl Envion Microbiol , vol.55 , pp. 623-630
    • Hirano, S.S.1    Upper, C.D.2
  • 66
    • 44649182030 scopus 로고    scopus 로고
    • Assessing the impact of the biological control agent Bacillus thuringiensis on the indigenous microbial community within the pepper plant phyllosphere
    • doi: 10.1111/j.1574-6968.2008.01178.x
    • Zhang B, Bai Z, Hoefel D, Tang L, Yang Z, et al. (2008) Assessing the impact of the biological control agent Bacillus thuringiensis on the indigenous microbial community within the pepper plant phyllosphere. FEMS Microbiol Lett 284: 102-108. doi:10.1111/j.1574-6968.2008.01178.x. PubMed: 18462395.
    • (2008) FEMS Microbiol Lett , vol.284 , pp. 102-108
    • Zhang, B.1    Bai, Z.2    Hoefel, D.3    Tang, L.4    Yang, Z.5
  • 67
    • 84855942478 scopus 로고    scopus 로고
    • Characterization of interactions between Escherichia coli O157:H7 with epiphytic bacteria in vitro and on spinach leaf surfaces
    • doi: 10.1016/j.ijfoodmicro.2011.11.026
    • Lopez-Velasco G, Tydings HA, Boyer RR, Falkinham JO, Ponder MA, (2012) Characterization of interactions between Escherichia coli O157:H7 with epiphytic bacteria in vitro and on spinach leaf surfaces. Int J Food Microbiol 153: 351-357. doi:10.1016/j.ijfoodmicro.2011.11.026. PubMed: 22177225.
    • (2012) Int J Food Microbiol , vol.153 , pp. 351-357
    • Lopez-Velasco, G.1    Tydings, H.A.2    Boyer, R.R.3    Falkinham, J.O.4    Ponder, M.A.5
  • 68
    • 84862170733 scopus 로고    scopus 로고
    • Modeling microbial communities: Current, developing, and future technologies for predicting microbial community interaction
    • doi: 10.1016/j.jbiotec.2012.03.009
    • Larsen P, Hamada Y, Gilbert J, (2012) Modeling microbial communities: Current, developing, and future technologies for predicting microbial community interaction. J Biotechnol 160: 17-24. doi:10.1016/j.jbiotec.2012.03.009. PubMed: 22465599.
    • (2012) J Biotechnol , vol.160 , pp. 17-24
    • Larsen, P.1    Hamada, Y.2    Gilbert, J.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.