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Volumn 114, Issue 12, 2017, Pages E2450-E2459

Simplified and representative bacterial community of maize roots

Author keywords

Biological control; Community assembly; Maize; Synthetic community

Indexed keywords

RNA 16S;

EID: 85016090482     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.1616148114     Document Type: Article
Times cited : (470)

References (88)
  • 1
    • 84864460685 scopus 로고    scopus 로고
    • Defining the core Arabidopsis thaliana root microbiome
    • Lundberg DS, et al. (2012) Defining the core Arabidopsis thaliana root microbiome. Nature 488(7409):86-90.
    • (2012) Nature , vol.488 , Issue.7409 , pp. 86-90
    • Lundberg, D.S.1
  • 2
    • 84939825194 scopus 로고    scopus 로고
    • PLANT MICROBIOME. Salicylic acid modulates colonization of the root microbiome by specific bacterial taxa
    • Lebeis SL, et al. (2015) PLANT MICROBIOME. Salicylic acid modulates colonization of the root microbiome by specific bacterial taxa. Science 349(6250):860-864.
    • (2015) Science , vol.349 , Issue.6250 , pp. 860-864
    • Lebeis, S.L.1
  • 3
    • 84978378801 scopus 로고    scopus 로고
    • Host genotype and age shape the leaf and root microbiomes of a wild perennial plant
    • Wagner MR, et al. (2016) Host genotype and age shape the leaf and root microbiomes of a wild perennial plant. Nat Commun 7:12151.
    • (2016) Nat Commun , vol.7 , pp. 12151
    • Wagner, M.R.1
  • 4
    • 84864460264 scopus 로고    scopus 로고
    • Revealing structure and assembly cues for Arabidopsis rootinhabiting bacterial microbiota
    • Bulgarelli D, et al. (2012) Revealing structure and assembly cues for Arabidopsis rootinhabiting bacterial microbiota. Nature 488(7409):91-95.
    • (2012) Nature , vol.488 , Issue.7409 , pp. 91-95
    • Bulgarelli, D.1
  • 5
    • 84950291119 scopus 로고    scopus 로고
    • Functional overlap of the Arabidopsis leaf and root microbiota
    • Bai Y, et al. (2015) Functional overlap of the Arabidopsis leaf and root microbiota. Nature 528(7582):364-369.
    • (2015) Nature , vol.528 , Issue.7582 , pp. 364-369
    • Bai, Y.1
  • 6
    • 84921877062 scopus 로고    scopus 로고
    • Bacterial networks and co-occurrence relationships in the lettuce root microbiota
    • Cardinale M, Grube M, Erlacher A, Quehenberger J, Berg G (2015) Bacterial networks and co-occurrence relationships in the lettuce root microbiota. Environ Microbiol 17(1):239-252.
    • (2015) Environ Microbiol , vol.17 , Issue.1 , pp. 239-252
    • Cardinale, M.1    Grube, M.2    Erlacher, A.3    Quehenberger, J.4    Berg, G.5
  • 7
    • 84976875307 scopus 로고    scopus 로고
    • Unlocking the bacterial and fungal communities assemblages of sugarcane microbiome
    • de Souza RSC, et al. (2016) Unlocking the bacterial and fungal communities assemblages of sugarcane microbiome. Sci Rep 6:28774.
    • (2016) Sci Rep , vol.6 , pp. 28774
    • De Souza, R.S.C.1
  • 8
    • 61649118780 scopus 로고    scopus 로고
    • Plant species and soil type cooperatively shape the structure and function of microbial communities in the rhizosphere
    • Berg G, Smalla K (2009) Plant species and soil type cooperatively shape the structure and function of microbial communities in the rhizosphere. FEMS Microbiol Ecol 68(1): 1-13.
    • (2009) FEMS Microbiol Ecol , vol.68 , Issue.1 , pp. 1-13
    • Berg, G.1    Smalla, K.2
  • 9
    • 84923647491 scopus 로고    scopus 로고
    • Structure, variation, and assembly of the root-associated microbiomes of rice
    • Edwards J, et al. (2015) Structure, variation, and assembly of the root-associated microbiomes of rice. Proc Natl Acad Sci USA 112(8):E911-E920.
    • (2015) Proc Natl Acad Sci USA , vol.112 , Issue.8 , pp. E911-E920
    • Edwards, J.1
  • 10
    • 84923100804 scopus 로고    scopus 로고
    • Niche and host-associated functional signatures of the root surface microbiome
    • Ofek-Lalzar M, et al. (2014) Niche and host-associated functional signatures of the root surface microbiome. Nat Commun 5:4950.
    • (2014) Nat Commun , vol.5 , pp. 4950
    • Ofek-Lalzar, M.1
  • 11
    • 84959431727 scopus 로고    scopus 로고
    • Lignin engineering in field-grown poplar trees affects the endosphere bacterial microbiome
    • Beckers B, et al. (2016) Lignin engineering in field-grown poplar trees affects the endosphere bacterial microbiome. Proc Natl Acad Sci USA 113(8):2312-2317.
    • (2016) Proc Natl Acad Sci USA , vol.113 , Issue.8 , pp. 2312-2317
    • Beckers, B.1
  • 12
    • 84953295686 scopus 로고    scopus 로고
    • The microbiome of the leaf surface of Arabidopsis protects against a fungal pathogen
    • Ritpitakphong U, et al. (2016) The microbiome of the leaf surface of Arabidopsis protects against a fungal pathogen. New Phytol 210(3):1033-1043.
    • (2016) New Phytol , vol.210 , Issue.3 , pp. 1033-1043
    • Ritpitakphong, U.1
  • 13
    • 57349182720 scopus 로고    scopus 로고
    • Plant host habitat and root exudates shape soil bacterial community structure
    • Haichar FZ, et al. (2008) Plant host habitat and root exudates shape soil bacterial community structure. ISME J 2(12):1221-1230.
    • (2008) ISME J , vol.2 , Issue.12 , pp. 1221-1230
    • Haichar, F.Z.1
  • 14
    • 84963611503 scopus 로고    scopus 로고
    • Lypd8 promotes the segregation of flagellated microbiota and colonic epithelia
    • Okumura R, et al. (2016) Lypd8 promotes the segregation of flagellated microbiota and colonic epithelia. Nature 532(7597):117-121.
    • (2016) Nature , vol.532 , Issue.7597 , pp. 117-121
    • Okumura, R.1
  • 16
    • 84949772416 scopus 로고    scopus 로고
    • Disentangling type 2 diabetes and metformin treatment signatures in the human gut microbiota
    • Forslund K, et al.; MetaHIT consortium (2015) Disentangling type 2 diabetes and metformin treatment signatures in the human gut microbiota. Nature 528(7581): 262-266.
    • (2015) Nature , vol.528 , Issue.7581 , pp. 262-266
    • Forslund, K.1
  • 17
    • 84908074440 scopus 로고    scopus 로고
    • Biogeography and individuality shape function in the human skin metagenome
    • Oh J, et al.; NISC Comparative Sequencing Program (2014) Biogeography and individuality shape function in the human skin metagenome. Nature 514(7520):59-64.
    • (2014) Nature , vol.514 , Issue.7520 , pp. 59-64
    • Oh, J.1
  • 18
    • 84926248729 scopus 로고    scopus 로고
    • Biogeography of the intestinal mucosal and lumenal microbiome in the rhesus macaque
    • Yasuda K, et al. (2015) Biogeography of the intestinal mucosal and lumenal microbiome in the rhesus macaque. Cell Host Microbe 17(3):385-391.
    • (2015) Cell Host Microbe , vol.17 , Issue.3 , pp. 385-391
    • Yasuda, K.1
  • 19
    • 84929992013 scopus 로고    scopus 로고
    • Ocean plankton. Structure and function of the global ocean microbiome
    • Sunagawa S, et al.; Tara Oceans coordinators (2015) Ocean plankton. Structure and function of the global ocean microbiome. Science 348(6237):1261359.
    • (2015) Science , vol.348 , Issue.6237 , pp. 1261359
    • Sunagawa, S.1
  • 22
    • 84922937083 scopus 로고    scopus 로고
    • MyD88 signaling in T cells directs IgA-mediated control of the microbiota to promote health
    • Kubinak JL, et al. (2015) MyD88 signaling in T cells directs IgA-mediated control of the microbiota to promote health. Cell Host Microbe 17(2):153-163.
    • (2015) Cell Host Microbe , vol.17 , Issue.2 , pp. 153-163
    • Kubinak, J.L.1
  • 23
    • 84912035375 scopus 로고    scopus 로고
    • Gill bacteria enable a novel digestive strategy in a woodfeeding mollusk
    • O'Connor RM, et al. (2014) Gill bacteria enable a novel digestive strategy in a woodfeeding mollusk. Proc Natl Acad Sci USA 111(47):E5096-E5104.
    • (2014) Proc Natl Acad Sci USA , vol.111 , Issue.47 , pp. E5096-E5104
    • O'Connor, R.M.1
  • 24
    • 79959855078 scopus 로고    scopus 로고
    • Predicting a human gut microbiota's response to diet in gnotobiotic mice
    • Faith JJ, McNulty NP, Rey FE, Gordon JI (2011) Predicting a human gut microbiota's response to diet in gnotobiotic mice. Science 333(6038):101-104.
    • (2011) Science , vol.333 , Issue.6038 , pp. 101-104
    • Faith, J.J.1    McNulty, N.P.2    Rey, F.E.3    Gordon, J.I.4
  • 25
    • 80054960299 scopus 로고    scopus 로고
    • The impact of a consortium of fermented milk strains on the gut microbiome of gnotobiotic mice and monozygotic twins
    • McNulty NP, et al. (2011) The impact of a consortium of fermented milk strains on the gut microbiome of gnotobiotic mice and monozygotic twins. Sci Transl Med 3(106): 106ra106.
    • (2011) Sci Transl Med , vol.3 , Issue.106 , pp. 106ra106
    • McNulty, N.P.1
  • 26
    • 84901342373 scopus 로고    scopus 로고
    • A synthetic community approach reveals plant genotypes affecting the phyllosphere microbiota
    • Bodenhausen N, Bortfeld-Miller M, Ackermann M, Vorholt JA (2014) A synthetic community approach reveals plant genotypes affecting the phyllosphere microbiota. PLoS Genet 10(4):e1004283.
    • (2014) PLoS Genet , vol.10 , Issue.4 , pp. e1004283
    • Bodenhausen, N.1    Bortfeld-Miller, M.2    Ackermann, M.3    Vorholt, J.A.4
  • 27
    • 84876259793 scopus 로고    scopus 로고
    • Diversity and heritability of the maize rhizosphere microbiome under field conditions
    • Peiffer JA, et al. (2013) Diversity and heritability of the maize rhizosphere microbiome under field conditions. Proc Natl Acad Sci USA 110(16):6548-6553.
    • (2013) Proc Natl Acad Sci USA , vol.110 , Issue.16 , pp. 6548-6553
    • Peiffer, J.A.1
  • 28
    • 78650180880 scopus 로고    scopus 로고
    • Plant genotype strongly modifies the structure and growth of maize rhizosphere microbial communities
    • Aira M, Gómez-Brandón M, Lazcano C, Bååth E, Domínguez J (2010) Plant genotype strongly modifies the structure and growth of maize rhizosphere microbial communities. Soil Biol Biochem 42(12):2276-2281.
    • (2010) Soil Biol Biochem , vol.42 , Issue.12 , pp. 2276-2281
    • Aira, M.1    Gómez-Brandón, M.2    Lazcano, C.3    Bååth, E.4    Domínguez, J.5
  • 29
    • 84155167177 scopus 로고    scopus 로고
    • Is diversification history of maize influencing selection of soil bacteria by roots?
    • Bouffaud ML, et al. (2012) Is diversification history of maize influencing selection of soil bacteria by roots? Mol Ecol 21(1):195-206.
    • (2012) Mol Ecol , vol.21 , Issue.1 , pp. 195-206
    • Bouffaud, M.L.1
  • 30
    • 84871367977 scopus 로고    scopus 로고
    • Bacterial diversity in the rhizosphere of maize and the surrounding carbonate-rich bulk soil
    • García-Salamanca A, et al. (2013) Bacterial diversity in the rhizosphere of maize and the surrounding carbonate-rich bulk soil. Microb Biotechnol 6(1):36-44.
    • (2013) Microb Biotechnol , vol.6 , Issue.1 , pp. 36-44
    • García-Salamanca, A.1
  • 31
    • 0034948012 scopus 로고    scopus 로고
    • Bacterial diversity of the rhizosphere of maize (Zea mays) grown in tropical soil studied by temperature gradient gel electrophoresis
    • Gomes N, et al. (2001) Bacterial diversity of the rhizosphere of maize (Zea mays) grown in tropical soil studied by temperature gradient gel electrophoresis. Plant Soil 232(1-2):167-180.
    • (2001) Plant Soil , vol.232 , Issue.1-2 , pp. 167-180
    • Gomes, N.1
  • 32
    • 33745134693 scopus 로고    scopus 로고
    • Potential of a 16S rRNA-based taxonomic microarray for analyzing the rhizosphere effects of maize on Agrobacterium spp. and bacterial communities
    • Sanguin H, et al. (2006) Potential of a 16S rRNA-based taxonomic microarray for analyzing the rhizosphere effects of maize on Agrobacterium spp. and bacterial communities. Appl Environ Microbiol 72(6):4302-4312.
    • (2006) Appl Environ Microbiol , vol.72 , Issue.6 , pp. 4302-4312
    • Sanguin, H.1
  • 33
    • 84903786219 scopus 로고    scopus 로고
    • Host signature effect on plant root-associated microbiomes revealed through analyses of resident vs. Active communities
    • Ofek M, Voronov-Goldman M, Hadar Y, Minz D (2014) Host signature effect on plant root-associated microbiomes revealed through analyses of resident vs. active communities. Environ Microbiol 16(7):2157-2167.
    • (2014) Environ Microbiol , vol.16 , Issue.7 , pp. 2157-2167
    • Ofek, M.1    Voronov-Goldman, M.2    Hadar, Y.3    Minz, D.4
  • 34
    • 84897678131 scopus 로고    scopus 로고
    • Maize seedling blight induced by Fusarium verticillioides: Accumulation of fumonisin B1 in leaves without colonization of the leaves
    • Baldwin TT, et al. (2014) Maize seedling blight induced by Fusarium verticillioides: Accumulation of fumonisin B1 in leaves without colonization of the leaves. J Agric Food Chem 62(9):2118-2125.
    • (2014) J Agric Food Chem , vol.62 , Issue.9 , pp. 2118-2125
    • Baldwin, T.T.1
  • 35
    • 0036184155 scopus 로고    scopus 로고
    • Fdb1 and Fdb2, Fusarium verticillioides loci necessary for detoxification of preformed antimicrobials from corn
    • Glenn AE, Gold SE, Bacon CW (2002) Fdb1 and Fdb2, Fusarium verticillioides loci necessary for detoxification of preformed antimicrobials from corn. Mol Plant Microbe Interact 15(2):91-101.
    • (2002) Mol Plant Microbe Interact , vol.15 , Issue.2 , pp. 91-101
    • Glenn, A.E.1    Gold, S.E.2    Bacon, C.W.3
  • 39
    • 84926245612 scopus 로고    scopus 로고
    • Structure and function of the bacterial root microbiota in wild and domesticated barley
    • Bulgarelli D, et al. (2015) Structure and function of the bacterial root microbiota in wild and domesticated barley. Cell Host Microbe 17(3):392-403.
    • (2015) Cell Host Microbe , vol.17 , Issue.3 , pp. 392-403
    • Bulgarelli, D.1
  • 40
    • 80052769418 scopus 로고    scopus 로고
    • Distinct microbial communities within the endosphere and rhizosphere of Populus deltoides roots across contrasting soil types
    • Gottel NR, et al. (2011) Distinct microbial communities within the endosphere and rhizosphere of Populus deltoides roots across contrasting soil types. Appl Environ Microbiol 77(17):5934-5944.
    • (2011) Appl Environ Microbiol , vol.77 , Issue.17 , pp. 5934-5944
    • Gottel, N.R.1
  • 41
    • 84874056533 scopus 로고    scopus 로고
    • Bacterial communities associated with the leaves and the roots of Arabidopsis thaliana
    • Bodenhausen N, Horton MW, Bergelson J (2013) Bacterial communities associated with the leaves and the roots of Arabidopsis thaliana. PLoS One 8(2):e56329.
    • (2013) PLoS One , vol.8 , Issue.2 , pp. e56329
    • Bodenhausen, N.1    Horton, M.W.2    Bergelson, J.3
  • 42
    • 84922335265 scopus 로고    scopus 로고
    • Microbial genome-enabled insights into plant-microorganism interactions
    • Guttman DS, McHardy AC, Schulze-Lefert P (2014) Microbial genome-enabled insights into plant-microorganism interactions. Nat Rev Genet 15(12):797-813.
    • (2014) Nat Rev Genet , vol.15 , Issue.12 , pp. 797-813
    • Guttman, D.S.1    McHardy, A.C.2    Schulze-Lefert, P.3
  • 43
    • 84929298149 scopus 로고    scopus 로고
    • Microbiota and host nutrition across plant and animal kingdoms
    • Hacquard S, et al. (2015) Microbiota and host nutrition across plant and animal kingdoms. Cell Host Microbe 17(5):603-616.
    • (2015) Cell Host Microbe , vol.17 , Issue.5 , pp. 603-616
    • Hacquard, S.1
  • 44
    • 79952005915 scopus 로고    scopus 로고
    • Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample
    • Caporaso JG, et al. (2011) Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample. Proc Natl Acad Sci USA 108(Suppl 1):4516-4522.
    • (2011) Proc Natl Acad Sci USA , vol.108 , pp. 4516-4522
    • Caporaso, J.G.1
  • 45
    • 84863981120 scopus 로고    scopus 로고
    • Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms
    • Caporaso JG, et al. (2012) Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms. ISME J 6(8):1621-1624.
    • (2012) ISME J , vol.6 , Issue.8 , pp. 1621-1624
    • Caporaso, J.G.1
  • 46
    • 0028978068 scopus 로고
    • Survey of indigenous bacterial endophytes from cotton and sweet corn
    • Mcinroy JA, Kloepper JW (1995) Survey of indigenous bacterial endophytes from cotton and sweet corn. Plant Soil 173(2):337-342.
    • (1995) Plant Soil , vol.173 , Issue.2 , pp. 337-342
    • McInroy, J.A.1    Kloepper, J.W.2
  • 47
    • 34548404485 scopus 로고    scopus 로고
    • Comparative analysis of the complete genome sequence of the plant growth-promoting bacterium Bacillus amyloliquefaciens FZB42
    • Chen XH, et al. (2007) Comparative analysis of the complete genome sequence of the plant growth-promoting bacterium Bacillus amyloliquefaciens FZB42. Nat Biotechnol 25(9):1007-1014.
    • (2007) Nat Biotechnol , vol.25 , Issue.9 , pp. 1007-1014
    • Chen, X.H.1
  • 48
    • 84907991597 scopus 로고    scopus 로고
    • Polymyxin P is the active principle in suppressing phytopathogenic Erwinia spp. by the biocontrol rhizobacterium Paenibacillus polymyxa M-1
    • Niu B, et al. (2013) Polymyxin P is the active principle in suppressing phytopathogenic Erwinia spp. by the biocontrol rhizobacterium Paenibacillus polymyxa M-1. BMC Microbiol 13(1):137.
    • (2013) BMC Microbiol , vol.13 , Issue.1 , pp. 137
    • Niu, B.1
  • 49
    • 84870802630 scopus 로고    scopus 로고
    • Bacteriophytochrome controls carotenoid-independent response to photodynamic stress in a non-photosynthetic rhizobacterium, Azospirillum brasilense Sp7
    • Kumar S, et al. (2012) Bacteriophytochrome controls carotenoid-independent response to photodynamic stress in a non-photosynthetic rhizobacterium, Azospirillum brasilense Sp7. Sci Rep 2:872.
    • (2012) Sci Rep , vol.2 , pp. 872
    • Kumar, S.1
  • 50
    • 77952243141 scopus 로고    scopus 로고
    • QIIME allows analysis of high-throughput community sequencing data
    • Caporaso JG, et al. (2010) QIIME allows analysis of high-throughput community sequencing data. Nat Methods 7(5):335-336.
    • (2010) Nat Methods , vol.7 , Issue.5 , pp. 335-336
    • Caporaso, J.G.1
  • 51
    • 84923545661 scopus 로고    scopus 로고
    • Interpreting 16S metagenomic data without clustering to achieve sub-OTU resolution
    • Tikhonov M, Leach RW, Wingreen NS (2015) Interpreting 16S metagenomic data without clustering to achieve sub-OTU resolution. ISME J 9(1):68-80.
    • (2015) ISME J , vol.9 , Issue.1 , pp. 68-80
    • Tikhonov, M.1    Leach, R.W.2    Wingreen, N.S.3
  • 52
    • 0028819289 scopus 로고
    • Enterobacter cloacae is an endophytic symbiont of corn
    • Hinton DM, Bacon CW (1995) Enterobacter cloacae is an endophytic symbiont of corn. Mycopathologia 129(2):117-125.
    • (1995) Mycopathologia , vol.129 , Issue.2 , pp. 117-125
    • Hinton, D.M.1    Bacon, C.W.2
  • 53
    • 64749099600 scopus 로고    scopus 로고
    • Quantitative community fingerprinting methods for estimating the abundance of operational taxonomic units in natural microbial communities
    • Ramette A (2009) Quantitative community fingerprinting methods for estimating the abundance of operational taxonomic units in natural microbial communities. Appl Environ Microbiol 75(8):2495-2505.
    • (2009) Appl Environ Microbiol , vol.75 , Issue.8 , pp. 2495-2505
    • Ramette, A.1
  • 54
    • 46549086126 scopus 로고    scopus 로고
    • Improved detection of soil microorganisms using fluorescence in situ hybridization (FISH) and catalyzed reporter deposition (CARDFISH)
    • Eickhorst T, Tippkötter R (2008) Improved detection of soil microorganisms using fluorescence in situ hybridization (FISH) and catalyzed reporter deposition (CARDFISH). Soil Biol Biochem 40(7):1883-1891.
    • (2008) Soil Biol Biochem , vol.40 , Issue.7 , pp. 1883-1891
    • Eickhorst, T.1    Tippkötter, R.2
  • 56
    • 57649123534 scopus 로고    scopus 로고
    • Global phenotypic characterization of bacteria
    • Bochner BR (2009) Global phenotypic characterization of bacteria. FEMS Microbiol Rev 33(1):191-205.
    • (2009) FEMS Microbiol Rev , vol.33 , Issue.1 , pp. 191-205
    • Bochner, B.R.1
  • 57
    • 0025660137 scopus 로고
    • Invasion resistance arises in strongly interacting species-rich model competition communities
    • Case TJ (1990) Invasion resistance arises in strongly interacting species-rich model competition communities. Proc Natl Acad Sci USA 87(24):9610-9614.
    • (1990) Proc Natl Acad Sci USA , vol.87 , Issue.24 , pp. 9610-9614
    • Case, T.J.1
  • 58
    • 84942163083 scopus 로고    scopus 로고
    • Trophic network architecture of root-associated bacterial communities determines pathogen invasion and plant health
    • Wei Z, et al. (2015) Trophic network architecture of root-associated bacterial communities determines pathogen invasion and plant health. Nat Commun 6:8413.
    • (2015) Nat Commun , vol.6 , pp. 8413
    • Wei, Z.1
  • 59
    • 84856369187 scopus 로고    scopus 로고
    • Microbial diversity determines the invasion of soil by a bacterial pathogen
    • van Elsas JD, et al. (2012) Microbial diversity determines the invasion of soil by a bacterial pathogen. Proc Natl Acad Sci USA 109(4):1159-1164.
    • (2012) Proc Natl Acad Sci USA , vol.109 , Issue.4 , pp. 1159-1164
    • Van Elsas, J.D.1
  • 60
    • 0037030642 scopus 로고    scopus 로고
    • Biodiversity as a barrier to ecological invasion
    • Kennedy TA, et al. (2002) Biodiversity as a barrier to ecological invasion. Nature 417(6889):636-638.
    • (2002) Nature , vol.417 , Issue.6889 , pp. 636-638
    • Kennedy, T.A.1
  • 61
    • 84855614028 scopus 로고    scopus 로고
    • Comparative analysis of bacterial communities in a potato field as determined by pyrosequencing
    • Inceoǧlu Ö, Al-Soud WA, Salles JF, Semenov AV, van Elsas JD (2011) Comparative analysis of bacterial communities in a potato field as determined by pyrosequencing. PLoS One 6(8):e23321.
    • (2011) PLoS One , vol.6 , Issue.8 , pp. e23321
    • Inceoǧlu, Ö.1    Al-Soud, W.A.2    Salles, J.F.3    Semenov, A.V.4    Van Elsas, J.D.5
  • 62
    • 79960835737 scopus 로고    scopus 로고
    • Rice root-associated bacteria: Insights into community structures across 10 cultivars
    • Hardoim PR, et al. (2011) Rice root-associated bacteria: Insights into community structures across 10 cultivars. FEMS Microbiol Ecol 77(1):154-164.
    • (2011) FEMS Microbiol Ecol , vol.77 , Issue.1 , pp. 154-164
    • Hardoim, P.R.1
  • 63
    • 84943626950 scopus 로고    scopus 로고
    • Engineering microbiomes to improve plant and animal health
    • Mueller UG, Sachs JL (2015) Engineering microbiomes to improve plant and animal health. Trends Microbiol 23(10):606-617.
    • (2015) Trends Microbiol , vol.23 , Issue.10 , pp. 606-617
    • Mueller, U.G.1    Sachs, J.L.2
  • 65
    • 84925144072 scopus 로고    scopus 로고
    • Selection on soil microbiomes reveals reproducible impacts on plant function
    • Panke-Buisse K, Poole AC, Goodrich JK, Ley RE, Kao-Kniffin J (2015) Selection on soil microbiomes reveals reproducible impacts on plant function. ISME J 9(4):980-989.
    • (2015) ISME J , vol.9 , Issue.4 , pp. 980-989
    • Panke-Buisse, K.1    Poole, A.C.2    Goodrich, J.K.3    Ley, R.E.4    Kao-Kniffin, J.5
  • 66
    • 79951548685 scopus 로고    scopus 로고
    • Uncultured bacterial diversity in tropical maize (Zea mays L.) rhizosphere
    • Chauhan PS, Chaudhry V, Mishra S, Nautiyal CS (2011) Uncultured bacterial diversity in tropical maize (Zea mays L.) rhizosphere. J Basic Microbiol 51(1):15-32.
    • (2011) J Basic Microbiol , vol.51 , Issue.1 , pp. 15-32
    • Chauhan, P.S.1    Chaudhry, V.2    Mishra, S.3    Nautiyal, C.S.4
  • 67
    • 84869162409 scopus 로고    scopus 로고
    • Microbial life in the phyllosphere
    • Vorholt JA (2012) Microbial life in the phyllosphere. Nat Rev Microbiol 10(12): 828-840.
    • (2012) Nat Rev Microbiol , vol.10 , Issue.12 , pp. 828-840
    • Vorholt, J.A.1
  • 68
    • 70349481520 scopus 로고    scopus 로고
    • Community proteogenomics reveals insights into the physiology of phyllosphere bacteria
    • Delmotte N, et al. (2009) Community proteogenomics reveals insights into the physiology of phyllosphere bacteria. Proc Natl Acad Sci USA 106(38):16428-16433.
    • (2009) Proc Natl Acad Sci USA , vol.106 , Issue.38 , pp. 16428-16433
    • Delmotte, N.1
  • 70
    • 57449090900 scopus 로고    scopus 로고
    • Defined spatial structure stabilizes a synthetic multispecies bacterial community
    • Kim HJ, Boedicker JQ, Choi JW, Ismagilov RF (2008) Defined spatial structure stabilizes a synthetic multispecies bacterial community. Proc Natl Acad Sci USA 105(47): 18188-18193.
    • (2008) Proc Natl Acad Sci USA , vol.105 , Issue.47 , pp. 18188-18193
    • Kim, H.J.1    Boedicker, J.Q.2    Choi, J.W.3    Ismagilov, R.F.4
  • 71
    • 84887914184 scopus 로고    scopus 로고
    • Perspective: The keystone species concept: A critical appraisal
    • Cottee-Jones HEW, Whittaker RJ (2012) Perspective: The keystone species concept: A critical appraisal. Front Biogeogr 4(3):117-127.
    • (2012) Front Biogeogr , vol.4 , Issue.3 , pp. 117-127
    • Cottee-Jones, H.E.W.1    Whittaker, R.J.2
  • 72
    • 80052061077 scopus 로고    scopus 로고
    • Marine bacterial, archaeal and protistan association networks reveal ecological linkages
    • Steele JA, et al. (2011) Marine bacterial, archaeal and protistan association networks reveal ecological linkages. ISME J 5(9):1414-1425.
    • (2011) ISME J , vol.5 , Issue.9 , pp. 1414-1425
    • Steele, J.A.1
  • 74
    • 84938801802 scopus 로고    scopus 로고
    • Manipulating the banana rhizosphere microbiome for biological control of Panama disease
    • Xue C, et al. (2015) Manipulating the banana rhizosphere microbiome for biological control of Panama disease. Sci Rep 5:11124.
    • (2015) Sci Rep , vol.5 , pp. 11124
    • Xue, C.1
  • 75
    • 84945299191 scopus 로고    scopus 로고
    • Chestnut green waste composting for sustainable forest management: Microbiota dynamics and impact on plant disease control
    • Ventorino V, et al. (2016) Chestnut green waste composting for sustainable forest management: Microbiota dynamics and impact on plant disease control. J Environ Manage 166:168-177.
    • (2016) J Environ Manage , vol.166 , pp. 168-177
    • Ventorino, V.1
  • 77
    • 77957244650 scopus 로고    scopus 로고
    • Search and clustering orders of magnitude faster than BLAST
    • Edgar RC (2010) Search and clustering orders of magnitude faster than BLAST. Bioinformatics 26(19):2460-2461.
    • (2010) Bioinformatics , vol.26 , Issue.19 , pp. 2460-2461
    • Edgar, R.C.1
  • 79
    • 75249107844 scopus 로고    scopus 로고
    • PyNAST: A flexible tool for aligning sequences to a template alignment
    • Caporaso JG, et al. (2010) PyNAST: A flexible tool for aligning sequences to a template alignment. Bioinformatics 26(2):266-267.
    • (2010) Bioinformatics , vol.26 , Issue.2 , pp. 266-267
    • Caporaso, J.G.1
  • 80
    • 67649327176 scopus 로고    scopus 로고
    • FastTree: Computing large minimum evolution trees with profiles instead of a distance matrix
    • Price MN, Dehal PS, Arkin AP (2009) FastTree: Computing large minimum evolution trees with profiles instead of a distance matrix. Mol Biol Evol 26(7):1641-1650.
    • (2009) Mol Biol Evol , vol.26 , Issue.7 , pp. 1641-1650
    • Price, M.N.1    Dehal, P.S.2    Arkin, A.P.3
  • 81
    • 84888865593 scopus 로고    scopus 로고
    • Differential abundance analysis for microbial marker-gene surveys
    • Paulson JN, Stine OC, Bravo HC, Pop M (2013) Differential abundance analysis for microbial marker-gene surveys. Nat Methods 10(12):1200-1202.
    • (2013) Nat Methods , vol.10 , Issue.12 , pp. 1200-1202
    • Paulson, J.N.1    Stine, O.C.2    Bravo, H.C.3    Pop, M.4
  • 82
    • 85027512476 scopus 로고    scopus 로고
    • MetagenomeSeq: Statistical analysis for sparse high-throughput sequencing
    • Accessed May 15, 2016
    • Paulson JN, Pop M, Bravo HC (2015) metagenomeSeq: Statistical analysis for sparse high-throughput sequencing. Bioconductor package 1.10.0. Available at cbcb.umd. edu/software/metagenomeSeq. Accessed May 15, 2016.
    • (2015) Bioconductor Package 1.10.0
    • Paulson, J.N.1    Pop, M.2    Bravo, H.C.3
  • 83
    • 29244441965 scopus 로고    scopus 로고
    • DGGE fragments oscillate with or counter to fluctuations in cultivable bacteria along wheat roots
    • van Diepeningen AD, de Vos OJ, Zelenev VV, Semenov AM, van Bruggen AH (2005) DGGE fragments oscillate with or counter to fluctuations in cultivable bacteria along wheat roots. Microb Ecol 50(4):506-517.
    • (2005) Microb Ecol , vol.50 , Issue.4 , pp. 506-517
    • Van Diepeningen, A.D.1    De Vos, O.J.2    Zelenev, V.V.3    Semenov, A.M.4    Van Bruggen, A.H.5
  • 84
    • 77956873356 scopus 로고    scopus 로고
    • Root colonization by Pseudomonas sp. DSMZ 13134 and impact on the indigenous rhizosphere bacterial community of barley
    • Buddrus-Schiemann K, Schmid M, Schreiner K, Welzl G, Hartmann A (2010) Root colonization by Pseudomonas sp. DSMZ 13134 and impact on the indigenous rhizosphere bacterial community of barley. Microb Ecol 60(2):381-393.
    • (2010) Microb Ecol , vol.60 , Issue.2 , pp. 381-393
    • Buddrus-Schiemann, K.1    Schmid, M.2    Schreiner, K.3    Welzl, G.4    Hartmann, A.5
  • 85
    • 40649129275 scopus 로고    scopus 로고
    • Preparation of genomic DNA from bacteria
    • Wilson K (2001) Preparation of genomic DNA from bacteria. Curr Protoc Mol Biol, 10.1002/0471142727.mb0204s56.
    • (2001) Curr Protoc Mol Biol
    • Wilson, K.1
  • 86
    • 84880798154 scopus 로고    scopus 로고
    • Nonhybrid, finished microbial genome assemblies from longread SMRT sequencing data
    • Chin C-S, et al. (2013) Nonhybrid, finished microbial genome assemblies from longread SMRT sequencing data. Nat Methods 10(6):563-569.
    • (2013) Nat Methods , vol.10 , Issue.6 , pp. 563-569
    • Chin, C.-S.1
  • 88
    • 84966430254 scopus 로고    scopus 로고
    • Characterization of the gut microbiome using 16S or shotgun metagenomics
    • Jovel J, et al. (2016) Characterization of the gut microbiome using 16S or shotgun metagenomics. Front Microbiol 7:459.
    • (2016) Front Microbiol , vol.7 , pp. 459
    • Jovel, J.1


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