-
1
-
-
85040683837
-
Many interspecific chromosomal introgressions are highly prevalent in Holarctic Saccharomyces uvarum strains found in human-related fermentations
-
Albertin, W., Chernova, M., Durrens, P., Guichoux, E., Sherman, D. J., Masneuf-Pomarede, I., et al. (2018). Many interspecific chromosomal introgressions are highly prevalent in Holarctic Saccharomyces uvarum strains found in human-related fermentations. Yeast 35, 141-156. doi: 10.1002/yea.3248
-
(2018)
Yeast
, vol.35
, pp. 141-156
-
-
Albertin, W.1
Chernova, M.2
Durrens, P.3
Guichoux, E.4
Sherman, D.J.5
Masneuf-Pomarede, I.6
-
2
-
-
84960110043
-
Efficient engineering of marker-free synthetic allotetraploids of Saccharomyces
-
Alexander, W. G., Peris, D., Pfannenstiel, B. T., Opulente, D. A., Kuang, M., and Hittinger, C. T. (2016). Efficient engineering of marker-free synthetic allotetraploids of Saccharomyces. Fungal Genet. Biol. 89, 10-17. doi: 10.1016/j.fgb.2015.11.002
-
(2016)
Fungal Genet. Biol.
, vol.89
, pp. 10-17
-
-
Alexander, W.G.1
Peris, D.2
Pfannenstiel, B.T.3
Opulente, D.A.4
Kuang, M.5
Hittinger, C.T.6
-
3
-
-
84901925216
-
A Gondwanan imprint on global diversity and domestication of wine and cider yeast Saccharomyces uvarum
-
Almeida, P., Gonçalves, C., Teixeira, S., Libkind, D., Bontrager, M., Masneuf-Pomarède, I., et al. (2014). A Gondwanan imprint on global diversity and domestication of wine and cider yeast Saccharomyces uvarum. Nat. Commun. 5:4044. doi: 10.1038/ncomms5044
-
(2014)
Nat. Commun.
, vol.5
, pp. 4044
-
-
Almeida, P.1
Gonçalves, C.2
Teixeira, S.3
Libkind, D.4
Bontrager, M.5
Masneuf-Pomarède, I.6
-
5
-
-
84920169999
-
Beer choice and consumption determinants when craft beers are tasted: An exploratory study of consumer preferences
-
Aquilani, B., Laureti, T., Poponi, S., and Secondi, L. (2015). Beer choice and consumption determinants when craft beers are tasted: An exploratory study of consumer preferences. Food Qual. Prefer. 41, 214-224. doi: 10.1016/j.foodqual.2014.12.005
-
(2015)
Food Qual. Prefer.
, vol.41
, pp. 214-224
-
-
Aquilani, B.1
Laureti, T.2
Poponi, S.3
Secondi, L.4
-
6
-
-
85055129074
-
-
ASBC. St. Paul, MI: American Society of Brewing Chemists.
-
ASBC (2011). ASBC Methods of Analysis. St. Paul, MI: American Society of Brewing Chemists.
-
(2011)
ASBC Methods of Analysis
-
-
-
7
-
-
84946036222
-
The genome sequence of saccharomyces eubayanus and the domestication of lager-brewing yeasts
-
Baker, E., Wang, B., Bellora, N., Peris, D., Hulfachor, A. B., Koshalek, J. A., et al. (2015). The genome sequence of saccharomyces eubayanus and the domestication of lager-brewing yeasts. Mol. Biol. Evol. 32, 2818-2831. doi: 10.1093/molbev/msv168
-
(2015)
Mol. Biol. Evol.
, vol.32
, pp. 2818-2831
-
-
Baker, E.1
Wang, B.2
Bellora, N.3
Peris, D.4
Hulfachor, A.B.5
Koshalek, J.A.6
-
8
-
-
84862262073
-
YeastMine-An integrated data warehouse for Saccharomyces cerevisiae data as a multipurpose tool-kit
-
Balakrishnan, R., Park, J., Karra, K., Hitz, B. C., Binkley, G., Hong, E. L., et al. (2012). YeastMine-An integrated data warehouse for Saccharomyces cerevisiae data as a multipurpose tool-kit. Database 2012:bar062. doi: 10.1093/database/bar062
-
(2012)
Database
, vol.2012
, pp. bar062
-
-
Balakrishnan, R.1
Park, J.2
Karra, K.3
Hitz, B.C.4
Binkley, G.5
Hong, E.L.6
-
9
-
-
0033950267
-
Phylogeny of the genus Kluyveromyces inferred from the mitochondrial cytochrome-c oxidase II gene
-
Belloch, C., Querol, A., García, M. D., and Barrio, E. (2000). Phylogeny of the genus Kluyveromyces inferred from the mitochondrial cytochrome-c oxidase II gene. Int. J. Syst. Evol. Microbiol. 50, 405-416. doi: 10.1099/00207713-50-1-405
-
(2000)
Int. J. Syst. Evol. Microbiol.
, vol.50
, pp. 405-416
-
-
Belloch, C.1
Querol, A.2
García, M.D.3
Barrio, E.4
-
10
-
-
79960735137
-
Newly generated interspecific wine yeast hybrids introduce flavour and aroma diversity to wines
-
Bellon, J. R., Eglinton, J. M., Siebert, T. E., Pollnitz, A. P., Rose, L., De Barros Lopes, M., et al. (2011). Newly generated interspecific wine yeast hybrids introduce flavour and aroma diversity to wines. Appl. Microbiol. Biotechnol. 91, 603-612. doi: 10.1007/s00253-011-3294-3
-
(2011)
Appl. Microbiol. Biotechnol.
, vol.91
, pp. 603-612
-
-
Bellon, J.R.1
Eglinton, J.M.2
Siebert, T.E.3
Pollnitz, A.P.4
Rose, L.5
De Barros Lopes, M.6
-
11
-
-
70450203033
-
Mixtools: An R package for analyzing finite mixture models
-
Benaglia, T., Chauveau, D., Hunter, D. R., and Young, D. (2009). Mixtools: an R package for analyzing finite mixture models. J. Stat. Softw. 32, 1-29. doi: 10.18637/jss.v032.i06
-
(2009)
J. Stat. Softw.
, vol.32
, pp. 1-29
-
-
Benaglia, T.1
Chauveau, D.2
Hunter, D.R.3
Young, D.4
-
12
-
-
84966658505
-
Manta: Rapid detection of structural variants and indels for germline and cancer sequencing applications
-
Chen, X., Schulz-Trieglaff, O., Shaw, R., Barnes, B., Schlesinger, F., Källberg, M., et al. (2016). Manta: rapid detection of structural variants and indels for germline and cancer sequencing applications. Bioinformatics 32, 1220-1222. doi: 10.1093/bioinformatics/btv710
-
(2016)
Bioinformatics
, vol.32
, pp. 1220-1222
-
-
Chen, X.1
Schulz-Trieglaff, O.2
Shaw, R.3
Barnes, B.4
Schlesinger, F.5
Källberg, M.6
-
13
-
-
84959179341
-
SpeedSeq: Ultra-fast personal genome analysis and interpretation
-
Chiang, C., Layer, R. M., Faust, G. G., Lindberg, M. R., Rose, D. B., Garrison, E. P., et al. (2015). SpeedSeq: ultra-fast personal genome analysis and interpretation. Nat. Methods 12, 1-5. doi: 10.1038/nmeth.3505
-
(2015)
Nat. Methods
, vol.12
, pp. 1-5
-
-
Chiang, C.1
Layer, R.M.2
Faust, G.G.3
Lindberg, M.R.4
Rose, D.B.5
Garrison, E.P.6
-
14
-
-
34249107966
-
Characterization of natural hybrids of Saccharomyces cerevisiae and Saccharomyces bayanus var
-
Christine, L. J., Marc, L., Catherine, D., Claude, E., Jean-Luc, L., Michel, A., et al. (2007). Characterization of natural hybrids of Saccharomyces cerevisiae and Saccharomyces bayanus var. uvarum. FEMS Yeast Res. 7, 540-549. doi: 10.1111/j.1567-1364.2007.00207.x
-
(2007)
Uvarum. FEMS Yeast Res.
, vol.7
, pp. 540-549
-
-
Christine, L.J.1
Marc, L.2
Catherine, D.3
Claude, E.4
Jean-Luc, L.5
Michel, A.6
-
15
-
-
84862506964
-
A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff: SNPs in the genome of Drosophila melanogaster strain w1118; Iso-2; iso-3
-
Cingolani, P., Platts, A., Wang, L. L., Coon, M., Nguyen, T., Wang, L., et al. (2012). A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff: SNPs in the genome of Drosophila melanogaster strain w1118; iso-2; iso-3. Fly 6, 80-92. doi: 10.4161/fly.19695
-
(2012)
Fly
, vol.6
, pp. 80-92
-
-
Cingolani, P.1
Platts, A.2
Wang, L.L.3
Coon, M.4
Nguyen, T.5
Wang, L.6
-
16
-
-
0032726091
-
Measurement of brewing yeast flocculation
-
D'Hautcourt, O., and Smart, K. A. (1999). Measurement of brewing yeast flocculation. J. Am. Soc. Brew. Chem. 57, 123-128. doi: 10.1094/ASBCJ-57-0129
-
(1999)
J. Am. Soc. Brew. Chem.
, vol.57
, pp. 123-128
-
-
D'Hautcourt, O.1
Smart, K.A.2
-
17
-
-
84875989311
-
Recurrent rearrangement during adaptive evolution in an interspecific yeast hybrid suggests a model for rapid introgression
-
Dunn, B., Paulish, T., Stanbery, A., Piotrowski, J., Koniges, G., Kroll, E., et al. (2013). Recurrent rearrangement during adaptive evolution in an interspecific yeast hybrid suggests a model for rapid introgression. PLoS Genet. 9:e1003366. doi: 10.1371/journal.pgen.1003366
-
(2013)
PLoS Genet.
, vol.9
, pp. e1003366
-
-
Dunn, B.1
Paulish, T.2
Stanbery, A.3
Piotrowski, J.4
Koniges, G.5
Kroll, E.6
-
18
-
-
53549098548
-
Reconstruction of the genome origins and evolution of the hybrid lager yeast Saccharomyces pastorianus
-
Dunn, B., and Sherlock, G. (2008). Reconstruction of the genome origins and evolution of the hybrid lager yeast Saccharomyces pastorianus. Genome Res. 18, 1610-1623. doi: 10.1101/gr.076075.108
-
(2008)
Genome Res.
, vol.18
, pp. 1610-1623
-
-
Dunn, B.1
Sherlock, G.2
-
19
-
-
85055121731
-
Kveik: The hottest new centuries-old beer yeast you've never heard of
-
Fowle, Z. (2017). Kveik: The Hottest New Centuries-old Beer Yeast You've Never Heard of. Draft Mag. Available at: http://draftmag.com/kveik-the-hottest-new-centuries-old-beer-yeast-youve-never-heard-of/
-
(2017)
Draft Mag.
-
-
Fowle, Z.1
-
20
-
-
84986322634
-
Domestication and divergence of Saccharomyces cerevisiae beer yeasts
-
Gallone, B., Steensels, J., Baele, G., Maere, S., Verstrepen, K. J., Prahl, T., et al. (2016). Domestication and divergence of Saccharomyces cerevisiae beer yeasts. Cell 166, 1397 e.16-1410 e.16. doi: 10.1016/j.cell.2016.08.020
-
(2016)
Cell
, vol.166
, pp. 1397e16-1410e16
-
-
Gallone, B.1
Steensels, J.2
Baele, G.3
Maere, S.4
Verstrepen, K.J.5
Prahl, T.6
-
21
-
-
84870422798
-
Qualimap: Evaluating next-generation sequencing alignment data
-
García-Alcalde, F., Okonechnikov, K., Carbonell, J., Cruz, L. M., Götz, S., Tarazona, S., et al. (2012). Qualimap: evaluating next-generation sequencing alignment data. Bioinformatics 28, 2678-2679. doi: 10.1093/bioinformatics/bts503
-
(2012)
Bioinformatics
, vol.28
, pp. 2678-2679
-
-
García-Alcalde, F.1
Okonechnikov, K.2
Carbonell, J.3
Cruz, L.M.4
Götz, S.5
Tarazona, S.6
-
25
-
-
85027127734
-
New yeasts - New brews: Modern approaches to brewing yeast design and development
-
Gibson, B., Geertman, J.-M. A., Hittinger, C. T., Krogerus, K., Libkind, D., Louis, E. J., et al. (2017). New yeasts - new brews: modern approaches to brewing yeast design and development. FEMS Yeast Res. 17:fox038. doi: 10.1093/femsyr/fox038
-
(2017)
FEMS Yeast Res.
, vol.17
, pp. fox038
-
-
Gibson, B.1
Geertman, J.-M.A.2
Hittinger, C.T.3
Krogerus, K.4
Libkind, D.5
Louis, E.J.6
-
26
-
-
84922655919
-
Saccharomyces pastorianus: Genomic insights inspiring innovation for industry
-
Gibson, B., and Liti, G. (2015). Saccharomyces pastorianus: Genomic insights inspiring innovation for industry. Yeast 32, 17-27. doi: 10.1002/yea.3033
-
(2015)
Yeast
, vol.32
, pp. 17-27
-
-
Gibson, B.1
Liti, G.2
-
27
-
-
84992021857
-
Distinct domestication trajectories in top-fermenting beer yeasts and wine yeasts
-
Gonçalves, M., Pontes, A., Almeida, P., Barbosa, R., Serra, M., Libkind, D., et al. (2016). Distinct domestication trajectories in top-fermenting beer yeasts and wine yeasts. Curr. Biol. 26, 2750-2761. doi: 10.1016/j.cub.2016.08.040
-
(2016)
Curr. Biol.
, vol.26
, pp. 2750-2761
-
-
Gonçalves, M.1
Pontes, A.2
Almeida, P.3
Barbosa, R.4
Serra, M.5
Libkind, D.6
-
28
-
-
42349105178
-
Molecular characterization of new natural hybrids of Saccharomyces cerevisiae and S
-
González, S. S., Barrio, E., and Querol, A. (2008). Molecular characterization of new natural hybrids of Saccharomyces cerevisiae and S. kudriavzevii in brewing. Appl. Environ. Microbiol. 74, 2314-2320. doi: 10.1128/AEM.01867-07
-
(2008)
Kudriavzevii in Brewing. Appl. Environ. Microbiol.
, vol.74
, pp. 2314-2320
-
-
González, S.S.1
Barrio, E.2
Querol, A.3
-
29
-
-
0032704161
-
A natural chimeric yeast containing genetic material from three species
-
Groth, C., Hansen, J., and Piskur, J. (1999). A natural chimeric yeast containing genetic material from three species. Int. J. Syst. Bacteriol. 49(Pt 4), 1933-1938. doi: 10.1099/00207713-49-4-1933
-
(1999)
Int. J. Syst. Bacteriol.
, vol.49
, pp. 1933-1938
-
-
Groth, C.1
Hansen, J.2
Piskur, J.3
-
30
-
-
84911374686
-
Circlize implements and enhances circular visualization in R
-
Gu, Z., Gu, L., Eils, R., Schlesner, M., and Brors, B. (2014). Circlize implements and enhances circular visualization in R. Bioinformatics 30, 2811-2812. doi: 10.1093/bioinformatics/btu393
-
(2014)
Bioinformatics
, vol.30
, pp. 2811-2812
-
-
Gu, Z.1
Gu, L.2
Eils, R.3
Schlesner, M.4
Brors, B.5
-
31
-
-
65949097067
-
FlowCore: A Bioconductor package for high throughput flow cytometry
-
Hahne, F., LeMeur, N., Brinkman, R. R., Ellis, B., Haaland, P., Sarkar, D., et al. (2009). flowCore: a Bioconductor package for high throughput flow cytometry. BMC Bioinformatics 10:106. doi: 10.1186/1471-2105-10-106
-
(2009)
BMC Bioinformatics
, vol.10
, pp. 106
-
-
Hahne, F.1
LeMeur, N.2
Brinkman, R.R.3
Ellis, B.4
Haaland, P.5
Sarkar, D.6
-
32
-
-
46749159290
-
Getting Things in Order?: An Introduction to the R Package seriation
-
Hahsler, M., Hornik, K., and Buchta, C. (2008). Getting Things in Order?: An Introduction to the R Package seriation. J. Stat. Softw. 25, 1-27. doi: 10.1088/0031-9120/44/5/F04
-
(2008)
J. Stat. Softw.
, vol.25
, pp. 1-27
-
-
Hahsler, M.1
Hornik, K.2
Buchta, C.3
-
33
-
-
84945294544
-
Scerevisiae × S. Eubayanus interspecific hybrid, the best of both worlds and beyond
-
Hebly, M., Brickwedde, A., Bolat, I., Driessen, M. R. M., de Hulster, E. A. F., van den Broek, M., et al. (2015). S. cerevisiae × S. eubayanus interspecific hybrid, the best of both worlds and beyond. FEMS Yeast Res. 15, 1-14. doi: 10.1093/femsyr/fov005
-
(2015)
FEMS Yeast Res.
, vol.15
, pp. 1-14
-
-
Hebly, M.1
Brickwedde, A.2
Bolat, I.3
Driessen, M.R.M.4
De Hulster, E.A.F.5
Van Den Broek, M.6
-
34
-
-
84968585979
-
Ploidy influences the functional attributes of de novo lager yeast hybrids
-
Krogerus, K., Arvas, M., De Chiara, M., Magalhães, F., Mattinen, L., Oja, M., et al. (2016). Ploidy influences the functional attributes of de novo lager yeast hybrids. Appl. Microbiol. Biotechnol. 100, 7203-7222. doi: 10.1007/s00253-016-7588-3
-
(2016)
Appl. Microbiol. Biotechnol.
, vol.100
, pp. 7203-7222
-
-
Krogerus, K.1
Arvas, M.2
De Chiara, M.3
Magalhães, F.4
Mattinen, L.5
Oja, M.6
-
35
-
-
85041305822
-
Enhanced wort fermentation with de novo lager hybrids adapted to high-ethanol environments
-
Krogerus, K., Holmström, S., and Gibson, B. (2018). Enhanced wort fermentation with de novo lager hybrids adapted to high-ethanol environments. Appl. Environ. Microbiol. 84, e2302-e2317. doi: 10.1128/AEM.02302-17
-
(2018)
Appl. Environ. Microbiol.
, vol.84
, pp. e2302-e2317
-
-
Krogerus, K.1
Holmström, S.2
Gibson, B.3
-
36
-
-
84939968287
-
New lager yeast strains generated by interspecific hybridization
-
Krogerus, K., Magalhães, F., Vidgren, V., and Gibson, B. (2015). New lager yeast strains generated by interspecific hybridization. J. Ind. Microbiol. Biotechnol. 42, 769-778. doi: 10.1007/s10295-015-1597-6
-
(2015)
J. Ind. Microbiol. Biotechnol.
, vol.42
, pp. 769-778
-
-
Krogerus, K.1
Magalhães, F.2
Vidgren, V.3
Gibson, B.4
-
37
-
-
85018501297
-
Inheritance of brewing-relevant phenotypes in constructed Saccharomyces cerevisiae x Saccharomyces eubayanus hybrids
-
Krogerus, K., Seppänen-Laakso, T., Castillo, S., and Gibson, B. (2017). Inheritance of brewing-relevant phenotypes in constructed Saccharomyces cerevisiae x Saccharomyces eubayanus hybrids. Microb. Cell Fact. 16:66. doi: 10.1186/s12934-017-0679-8
-
(2017)
Microb. Cell Fact.
, vol.16
, pp. 66
-
-
Krogerus, K.1
Seppänen-Laakso, T.2
Castillo, S.3
Gibson, B.4
-
38
-
-
80054915847
-
A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data
-
Li, H. (2011). A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data. Bioinformatics 27, 2987-2993. doi: 10.1093/bioinformatics/btr509
-
(2011)
Bioinformatics
, vol.27
, pp. 2987-2993
-
-
Li, H.1
-
39
-
-
68549104404
-
The sequence alignment/map format and SAMtools
-
Li, H., Handsaker, B., Wysoker, A., Fennell, T., Ruan, J., Homer, N., et al. (2009). The sequence alignment/map format and SAMtools. Bioinformatics 25, 2078-2079. doi: 10.1093/bioinformatics/btp352
-
(2009)
Bioinformatics
, vol.25
, pp. 2078-2079
-
-
Li, H.1
Handsaker, B.2
Wysoker, A.3
Fennell, T.4
Ruan, J.5
Homer, N.6
-
40
-
-
85040687999
-
Saccharomyces interspecies hybrids as model organisms for studying yeast adaptation to stressful environments
-
Lopandic, K. (2018). Saccharomyces interspecies hybrids as model organisms for studying yeast adaptation to stressful environments. Yeast 35, 21-38. doi: 10.1002/yea.3294
-
(2018)
Yeast
, vol.35
, pp. 21-38
-
-
Lopandic, K.1
-
41
-
-
84963681282
-
Genotypic and phenotypic evolution of yeast interspecies hybrids during high-sugar fermentation
-
Lopandic, K., Pfliegler, W. P., Tiefenbrunner, W., Gangl, H., Sipiczki, M., and Sterflinger, K. (2016). Genotypic and phenotypic evolution of yeast interspecies hybrids during high-sugar fermentation. Appl. Microbiol. Biotechnol. 100, 6331-6343. doi: 10.1007/s00253-016-7481-0
-
(2016)
Appl. Microbiol. Biotechnol.
, vol.100
, pp. 6331-6343
-
-
Lopandic, K.1
Pfliegler, W.P.2
Tiefenbrunner, W.3
Gangl, H.4
Sipiczki, M.5
Sterflinger, K.6
-
42
-
-
80255127234
-
Cutadapt removes adapter sequences from high-throughput sequencing reads
-
Martin, M. (2011). Cutadapt removes adapter sequences from high-throughput sequencing reads. EMBnet.journal 17:10. doi: 10.14806/ej.17.1.200
-
(2011)
EMBnet.journal
, vol.17
, pp. 10
-
-
Martin, M.1
-
43
-
-
0031657475
-
New hybrids between Saccharomyces sensu stricto yeast species found among wine and cider production strains
-
Masneuf, I., Hansen, J., Groth, C., Piskur, J., and Dubourdieu, D. (1998). New hybrids between Saccharomyces sensu stricto yeast species found among wine and cider production strains. Appl. Environ. Microbiol. 64, 3887-3892.
-
(1998)
Appl. Environ. Microbiol.
, vol.64
, pp. 3887-3892
-
-
Masneuf, I.1
Hansen, J.2
Groth, C.3
Piskur, J.4
Dubourdieu, D.5
-
44
-
-
85050617036
-
Saccharomyces cerevisiae variety diastaticus friend or foe? - Spoilage potential and brewing ability of different Saccharomyces cerevisiae variety diastaticus yeast isolates by genetic, phenotypic and physiological characterization
-
Meier-Dörnberg, T., Kory, O. I., Jacob, F., Michel, M., and Hutzler, M. (2018). Saccharomyces cerevisiae variety diastaticus friend or foe? - spoilage potential and brewing ability of different Saccharomyces cerevisiae variety diastaticus yeast isolates by genetic, phenotypic and physiological characterization. FEMS Yeast Res 18, foy023. doi: 10.1093/femsyr/foy023
-
(2018)
FEMS Yeast Res
, vol.18
, pp. foy023
-
-
Meier-Dörnberg, T.1
Kory, O.I.2
Jacob, F.3
Michel, M.4
Hutzler, M.5
-
45
-
-
0000876439
-
Prediction of flavor differences between beers from their chemical composition
-
Meilgaard, M. C. (1982). Prediction of flavor differences between beers from their chemical composition. J. Agric. Food Chem. 30, 1009-1017. doi: 10.1021/jf00114a002
-
(1982)
J. Agric. Food Chem.
, vol.30
, pp. 1009-1017
-
-
Meilgaard, M.C.1
-
46
-
-
85039437949
-
Rapid Screening Method for Phenolic Off-Flavor (POF) Production in Yeast
-
Mertens, S., Steensels, J., Gallone, B., Souffriau, B., Malcorps, P., and Verstrepen, K. J. (2017). Rapid Screening Method for Phenolic Off-Flavor (POF) Production in Yeast. J. Am. Soc. Brew. Chem. 75, 318-323. doi: 10.1094/ASBCJ-2017-4142-01
-
(2017)
J. Am. Soc. Brew. Chem.
, vol.75
, pp. 318-323
-
-
Mertens, S.1
Steensels, J.2
Gallone, B.3
Souffriau, B.4
Malcorps, P.5
Verstrepen, K.J.6
-
47
-
-
84946043832
-
A large set of newly created interspecific Saccharomyces hybrids increases aromatic diversity in lager beers
-
Mertens, S., Steensels, J., Saels, V., De Rouck, G., Aerts, G., and Verstrepen, K. J. (2015). A large set of newly created interspecific Saccharomyces hybrids increases aromatic diversity in lager beers. Appl. Environ. Microbiol. 81, 8202-8214. doi: 10.1128/AEM.02464-15
-
(2015)
Appl. Environ. Microbiol.
, vol.81
, pp. 8202-8214
-
-
Mertens, S.1
Steensels, J.2
Saels, V.3
De Rouck, G.4
Aerts, G.5
Verstrepen, K.J.6
-
48
-
-
84876519306
-
Ultrafast approximation for phylogenetic bootstrap
-
Minh, B. Q., Nguyen, M. A. T., and Von Haeseler, A. (2013). Ultrafast approximation for phylogenetic bootstrap. Mol. Biol. Evol. 30, 1188-1195. doi: 10.1093/molbev/mst024
-
(2013)
Mol. Biol. Evol.
, vol.30
, pp. 1188-1195
-
-
Minh, B.Q.1
Nguyen, M.A.T.2
Von Haeseler, A.3
-
49
-
-
85040681980
-
The hybrid genomes of Saccharomyces pastorianus: A current perspective
-
Monerawela, C., and Bond, U. (2018). The hybrid genomes of Saccharomyces pastorianus: A current perspective. Yeast 35, 39-50. doi: 10.1002/yea.3250
-
(2018)
Yeast
, vol.35
, pp. 39-50
-
-
Monerawela, C.1
Bond, U.2
-
50
-
-
80053985815
-
A multiplex set of species-specific primers for rapid identification of members of the genus Saccharomyces
-
Muir, A., Harrison, E., and Wheals, A. (2011). A multiplex set of species-specific primers for rapid identification of members of the genus Saccharomyces. FEMS Yeast Res. 11, 552-563. doi: 10.1111/j.1567-1364.2011.00745.x
-
(2011)
FEMS Yeast Res.
, vol.11
, pp. 552-563
-
-
Muir, A.1
Harrison, E.2
Wheals, A.3
-
51
-
-
80053610821
-
Deciphering the hybridisation history leading to the lager lineage based on the mosaic genomes of Saccharomyces bayanus strains NBRC1948 and CBS380 T
-
Nguyen, H. V., Legras, J. L., Neuvéglise, C., and Gaillardin, C. (2011). Deciphering the hybridisation history leading to the lager lineage based on the mosaic genomes of Saccharomyces bayanus strains NBRC1948 and CBS380 T. PLoS ONE 6:e25821. doi: 10.1371/journal.pone.0025821
-
(2011)
PLoS ONE
, vol.6
, pp. e25821
-
-
Nguyen, H.V.1
Legras, J.L.2
Neuvéglise, C.3
Gaillardin, C.4
-
52
-
-
84922362345
-
IQ-TREE: A fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies
-
Nguyen, L. T., Schmidt, H. A., Von Haeseler, A., and Minh, B. Q. (2015). IQ-TREE: A fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies. Mol. Biol. Evol. 32, 268-274. doi: 10.1093/molbev/msu300
-
(2015)
Mol. Biol. Evol.
, vol.32
, pp. 268-274
-
-
Nguyen, L.T.1
Schmidt, H.A.2
Von Haeseler, A.3
Minh, B.Q.4
-
53
-
-
85040688557
-
Alternative Saccharomyces interspecies hybrid combinations and their potential for low-temperature wort fermentation
-
Nikulin, J., Krogerus, K., and Gibson, B. (2018). Alternative Saccharomyces interspecies hybrid combinations and their potential for low-temperature wort fermentation. Yeast 35, 113-127. doi: 10.1002/yea.3246
-
(2018)
Yeast
, vol.35
, pp. 113-127
-
-
Nikulin, J.1
Krogerus, K.2
Gibson, B.3
-
54
-
-
84960131150
-
Next-generation sequencing analysis of lager brewing yeast strains reveals the evolutionary history of interspecies hybridization
-
Okuno, M., Kajitani, R., Ryusui, R., Morimoto, H., Kodama, Y., and Itoh, T. (2015). Next-generation sequencing analysis of lager brewing yeast strains reveals the evolutionary history of interspecies hybridization. DNA Res 23, 67-80. doi: 10.1093/dnares/dsv037
-
(2015)
DNA Res
, vol.23
, pp. 67-80
-
-
Okuno, M.1
Kajitani, R.2
Ryusui, R.3
Morimoto, H.4
Kodama, Y.5
Itoh, T.6
-
55
-
-
85040649637
-
Saccharomyces cerevisiae × Saccharomyces uvarum hybrids generated under different conditions share similar winemaking features
-
Origone, A. C., Rodríguez, M. E., Oteiza, J. M., Querol, A., and Lopes, C. A. (2018). Saccharomyces cerevisiae × Saccharomyces uvarum hybrids generated under different conditions share similar winemaking features. Yeast 35, 157-171. doi: 10.1002/yea.3295
-
(2018)
Yeast
, vol.35
, pp. 157-171
-
-
Origone, A.C.1
Rodríguez, M.E.2
Oteiza, J.M.3
Querol, A.4
Lopes, C.A.5
-
56
-
-
84873748187
-
Rapid identification of Saccharomyces eubayanus and its hybrids
-
Pengelly, R. J., and Wheals, A. E. (2013). Rapid identification of Saccharomyces eubayanus and its hybrids. FEMS Yeast Res. 13, 156-161. doi: 10.1111/1567-1364.12018
-
(2013)
FEMS Yeast Res.
, vol.13
, pp. 156-161
-
-
Pengelly, R.J.1
Wheals, A.E.2
-
57
-
-
85018471286
-
Hybridization and adaptive evolution of diverse Saccharomyces species for cellulosic biofuel production
-
Peris, D., Moriarty, R. V., Alexander, W. G., Baker, E., Sylvester, K., Sardi, M., et al. (2017). Hybridization and adaptive evolution of diverse Saccharomyces species for cellulosic biofuel production. Biotechnol. Biofuels 10:78. doi: 10.1186/s13068-017-0763-7
-
(2017)
Biotechnol. Biofuels
, vol.10
, pp. 78
-
-
Peris, D.1
Moriarty, R.V.2
Alexander, W.G.3
Baker, E.4
Sylvester, K.5
Sardi, M.6
-
58
-
-
85045540242
-
Genome evolution across 1,011 Saccharomyces cerevisiae isolates
-
Peter, J., De Chiara, M., Friedrich, A., Yue, J.-X., Pflieger, D., Bergström, A., et al. (2018). Genome evolution across 1,011 Saccharomyces cerevisiae isolates. Nature 556, 339-344. doi: 10.1038/s41586-018-0030-5
-
(2018)
Nature
, vol.556
, pp. 339-344
-
-
Peter, J.1
De Chiara, M.2
Friedrich, A.3
Yue, J.-X.4
Pflieger, D.5
Bergström, A.6
-
59
-
-
84857953414
-
Evaluation of ITS PCR and RFLP for differentiation and identification of brewing yeast and brewery "wild" yeast contaminants
-
Pham, T., Wimalasena, T., Box, W. G., Koivuranta, K., Storgårds, E., Smart, K. A., et al. (2011). Evaluation of ITS PCR and RFLP for differentiation and identification of brewing yeast and brewery "wild" yeast contaminants. J. Inst. Brew. 117, 556-568. doi: 10.1002/j.2050-0416.2011.tb00504.x
-
(2011)
J. Inst. Brew.
, vol.117
, pp. 556-568
-
-
Pham, T.1
Wimalasena, T.2
Box, W.G.3
Koivuranta, K.4
Storgårds, E.5
Smart, K.A.6
-
60
-
-
84859133877
-
Different selective pressures lead to different genomic outcomes as newly-formed hybrid yeasts evolve
-
Piotrowski, J. S., Nagarajan, S., Kroll, E., Stanbery, A., Chiotti, K. E., Kruckeberg, A. L., et al. (2012). Different selective pressures lead to different genomic outcomes as newly-formed hybrid yeasts evolve. BMC Evol. Biol. 12:46. doi: 10.1186/1471-2148-12-46
-
(2012)
BMC Evol. Biol.
, vol.12
, pp. 46
-
-
Piotrowski, J.S.1
Nagarajan, S.2
Kroll, E.3
Stanbery, A.4
Chiotti, K.E.5
Kruckeberg, A.L.6
-
61
-
-
84894574236
-
Heterosis is prevalent among domesticated but not wild strains of Saccharomyces cerevisiae
-
Plech, M., de Visser, J. A. G. M., and Korona, R. (2014). Heterosis is prevalent among domesticated but not wild strains of Saccharomyces cerevisiae. G 3, 315-323. doi: 10.1534/g3.113.009381
-
(2014)
G.
, vol.3
, pp. 315-323
-
-
Plech, M.1
De Visser, J.A.G.M.2
Korona, R.3
-
62
-
-
85055127578
-
Traditional Norwegian kveik are a genetically distinct group of domesticated Saccharomyces cerevisiae brewing yeasts
-
Preiss, R., Tyrawa, C., Krogerus, K., Garshol, L. M., and van der Merwe, G. (2018). Traditional Norwegian kveik are a genetically distinct group of domesticated Saccharomyces cerevisiae brewing yeasts. Front. Microbiol. 9:2137. doi: 10.3389/fmicb.2018.02137
-
(2018)
Front. Microbiol.
, vol.9
, pp. 2137
-
-
Preiss, R.1
Tyrawa, C.2
Krogerus, K.3
Garshol, L.M.4
Van Der Merwe, G.5
-
63
-
-
77951770756
-
BEDTools: A flexible suite of utilities for comparing genomic features
-
Quinlan, A. R., and Hall, I. M. (2010). BEDTools: A flexible suite of utilities for comparing genomic features. Bioinformatics 26, 841-842. doi: 10.1093/bioinformatics/btq033
-
(2010)
Bioinformatics
, vol.26
, pp. 841-842
-
-
Quinlan, A.R.1
Hall, I.M.2
-
64
-
-
33745164287
-
Pure and mixed genetic lines of Saccharomyces bayanus and Saccharomyces pastorianus and their contribution to the lager brewing strain genome
-
Rainieri, S., Kodama, Y., Kaneko, Y., Mikata, K., Nakao, Y., and Ashikari, T. (2006). Pure and mixed genetic lines of Saccharomyces bayanus and Saccharomyces pastorianus and their contribution to the lager brewing strain genome. Appl. Environ. Microbiol. 72, 3968-3974. doi: 10.1128/AEM.02769-05
-
(2006)
Appl. Environ. Microbiol.
, vol.72
, pp. 3968-3974
-
-
Rainieri, S.1
Kodama, Y.2
Kaneko, Y.3
Mikata, K.4
Nakao, Y.5
Ashikari, T.6
-
65
-
-
85045985271
-
NASP: An accurate, rapid method for the identification of SNPs in WGS datasets that supports flexible input and output formats
-
Roe, C., Smith, D. E., Williamson, C. H. D., Aziz, M., Keim, P., Hepp, C. M., et al. (2016). NASP: an accurate, rapid method for the identification of SNPs in WGS datasets that supports flexible input and output formats. Microb. Genomics 2:e000074. doi: 10.1099/mgen.0.000074
-
(2016)
Microb. Genomics
, vol.2
, pp. e000074
-
-
Roe, C.1
Smith, D.E.2
Williamson, C.H.D.3
Aziz, M.4
Keim, P.5
Hepp, C.M.6
-
66
-
-
0036085289
-
Breeding of brewer's yeast by hybridization between a top-fermenting yeast Saccharomyces cerevisiae and a cryophilic yeast Saccharomyces bayanus
-
Sato, M., Kishimoto, M., Watari, J., and Takashio, M. (2002). Breeding of brewer's yeast by hybridization between a top-fermenting yeast Saccharomyces cerevisiae and a cryophilic yeast Saccharomyces bayanus. J. Biosci. Bioeng. 93, 509-511. doi: 10.1016/S1389-1723(02)80101-r3
-
(2002)
J. Biosci. Bioeng.
, vol.93
, pp. 509-511
-
-
Sato, M.1
Kishimoto, M.2
Watari, J.3
Takashio, M.4
-
67
-
-
84883006832
-
The awesome power of yeast evolutionary genetics: New genome sequences and strain resources for the Saccharomyces sensu stricto Genus
-
Scannell, D. R., Zill, O. A., Rokas, A., Payen, C., Dunham, M. J., Eisen, M. B., et al. (2011). The awesome power of yeast evolutionary genetics: new genome sequences and strain resources for the Saccharomyces sensu stricto Genus. G3 1, 11-25. doi: 10.1534/g3.111.000273
-
(2011)
G3
, vol.1
, pp. 11-25
-
-
Scannell, D.R.1
Zill, O.A.2
Rokas, A.3
Payen, C.4
Dunham, M.J.5
Eisen, M.B.6
-
68
-
-
85021154864
-
Loss of heterozygosity drives adaptation in hybrid yeast
-
Smukowski Heil, C. S., DeSevo, C. G., Pai, D. A., Tucker, C. M., Hoang, M. L., and Dunham, M. J. (2017). Loss of heterozygosity drives adaptation in hybrid yeast. Mol. Biol. Evol. 34, 1596-1612. doi: 10.1093/molbev/msx098
-
(2017)
Mol. Biol. Evol.
, vol.34
, pp. 1596-1612
-
-
Smukowski Heil, C.S.1
DeSevo, C.G.2
Pai, D.A.3
Tucker, C.M.4
Hoang, M.L.5
Dunham, M.J.6
-
69
-
-
84928713612
-
Large-scale robot-assisted genome shuffling yields industrial Saccharomyces cerevisiae yeasts with increased ethanol tolerance
-
Snoek, T., Picca Nicolino, M., Van den Bremt, S., Mertens, S., Saels, V., Verplaetse, A., et al. (2015). Large-scale robot-assisted genome shuffling yields industrial Saccharomyces cerevisiae yeasts with increased ethanol tolerance. Biotechnol. Biofuels 8:32. doi: 10.1186/s13068-015-0216-0
-
(2015)
Biotechnol. Biofuels
, vol.8
, pp. 32
-
-
Snoek, T.1
Picca Nicolino, M.2
Van Den Bremt, S.3
Mertens, S.4
Saels, V.5
Verplaetse, A.6
-
70
-
-
84908302290
-
Large-scale selection and breeding to generate industrial yeasts with superior aroma production
-
Steensels, J., Meersman, E., Snoek, T., Saels, V., and Verstrepen, K. J. (2014a). Large-scale selection and breeding to generate industrial yeasts with superior aroma production. Appl. Environ. Microbiol. 80, 6965-6975. doi: 10.1128/AEM.02235-14
-
(2014)
Appl. Environ. Microbiol.
, vol.80
, pp. 6965-6975
-
-
Steensels, J.1
Meersman, E.2
Snoek, T.3
Saels, V.4
Verstrepen, K.J.5
-
71
-
-
84907510835
-
Improving industrial yeast strains: Exploiting natural and artificial diversity
-
Steensels, J., Snoek, T., Meersman, E., Nicolino, M. P., Voordeckers, K., and Verstrepen, K. J. (2014b). Improving industrial yeast strains: Exploiting natural and artificial diversity. FEMS Microbiol. Rev. 38, 947-995. doi: 10.1111/1574-6976.12073
-
(2014)
FEMS Microbiol. Rev.
, vol.38
, pp. 947-995
-
-
Steensels, J.1
Snoek, T.2
Meersman, E.3
Nicolino, M.P.4
Voordeckers, K.5
Verstrepen, K.J.6
-
72
-
-
84945273677
-
Chromosomal copy number variation in Saccharomyces pastorianus is evidence for extensive genome dynamics in industrial lager brewing strains
-
van den Broek, M., Bolat, I., Nijkamp, J. F., Ramos, E., Luttik, M. A. H., Koopman, F., et al. (2015). Chromosomal copy number variation in Saccharomyces pastorianus is evidence for extensive genome dynamics in industrial lager brewing strains. Appl. Environ. Microbiol. 81, 6253-6267. doi: 10.1128/AEM.01263-15
-
(2015)
Appl. Environ. Microbiol.
, vol.81
, pp. 6253-6267
-
-
Van Den Broek, M.1
Bolat, I.2
Nijkamp, J.F.3
Ramos, E.4
Luttik, M.A.H.5
Koopman, F.6
-
73
-
-
85040686083
-
The inheritance of mitochondrial DNA in interspecific Saccharomyces hybrids and their properties in winemaking
-
Verspohl, A., Pignedoli, S., and Giudici, P. (2018). The inheritance of mitochondrial DNA in interspecific Saccharomyces hybrids and their properties in winemaking. Yeast 35, 173-187. doi: 10.1002/yea.3288
-
(2018)
Yeast
, vol.35
, pp. 173-187
-
-
Verspohl, A.1
Pignedoli, S.2
Giudici, P.3
-
74
-
-
77952205484
-
The temperature dependence of maltose transport in ale and lager strains of brewer's yeast
-
Vidgren, V., Multanen, J. P., Ruohonen, L., and Londesborough, J. (2010). The temperature dependence of maltose transport in ale and lager strains of brewer's yeast. FEMS Yeast Res. 10, 402-411. doi: 10.1111/j.1567-1364.2010.00627.x
-
(2010)
FEMS Yeast Res.
, vol.10
, pp. 402-411
-
-
Vidgren, V.1
Multanen, J.P.2
Ruohonen, L.3
Londesborough, J.4
-
75
-
-
85046353913
-
Mitochondrial recombination reveals mito-mito epistasis in yeast
-
Wolters, J. F., Charron, G., Gaspary, A., Landry, C. R., Fiumera, A. C., and Fiumera, H. L. (2018). Mitochondrial recombination reveals mito-mito epistasis in yeast. Genetics 209, 307-319. doi: 10.1534/genetics.117.300660
-
(2018)
Genetics
, vol.209
, pp. 307-319
-
-
Wolters, J.F.1
Charron, G.2
Gaspary, A.3
Landry, C.R.4
Fiumera, A.C.5
Fiumera, H.L.6
-
76
-
-
0021925972
-
Polymorphic extracellular glucoamylase genes and their evolutionary origin in the yeast Saccharomyces diastaticus
-
Yamashita, I., Maemura, T., Hatano, T., and Fukui, S. (1985). Polymorphic extracellular glucoamylase genes and their evolutionary origin in the yeast Saccharomyces diastaticus. J. Bacteriol. 161, 574-582.
-
(1985)
J. Bacteriol.
, vol.161
, pp. 574-582
-
-
Yamashita, I.1
Maemura, T.2
Hatano, T.3
Fukui, S.4
-
77
-
-
0008582657
-
Rapid methods for detecting Saccharomyces diastaticus, a beer spoilage yeast, using the polymerase chain reaction
-
Yamauchi, H., Yamamoto, H., Shibano, Y., Amaya, N., and Saeki, T. (1998). Rapid methods for detecting Saccharomyces diastaticus, a beer spoilage yeast, using the polymerase chain reaction. J. Am. Soc. Brew. Chem. 56, 58-63. doi: 10.1094/ASBCJ-56-0058
-
(1998)
J. Am. Soc. Brew. Chem.
, vol.56
, pp. 58-63
-
-
Yamauchi, H.1
Yamamoto, H.2
Shibano, Y.3
Amaya, N.4
Saeki, T.5
-
78
-
-
85017506126
-
Contrasting evolutionary genome dynamics between domesticated and wild yeasts
-
Yue, J. X., Li, J., Aigrain, L., Hallin, J., Persson, K., Oliver, K., et al. (2017). Contrasting evolutionary genome dynamics between domesticated and wild yeasts. Nat. Genet. 49, 913-924. doi: 10.1038/ng.3847
-
(2017)
Nat. Genet.
, vol.49
, pp. 913-924
-
-
Yue, J.X.1
Li, J.2
Aigrain, L.3
Hallin, J.4
Persson, K.5
Oliver, K.6
|