메뉴 건너뛰기




Volumn 1, Issue 1, 2011, Pages 11-25

The awesome power of yeast evolutionary genetics: New genome sequences and strain resources for the Saccharomyces sensu stricto genus

Author keywords

Assembly; Evolutionary; Genetics; Genome; Genomics; Saccharomyces; Sensu stricto; Yeast species

Indexed keywords

SACCHAROMYCES; SACCHAROMYCES BAYANUS; SACCHAROMYCES CEREVISIAE; SACCHAROMYCES KUDRIAVZEVII; SACCHAROMYCES MIKATAE; SACCHAROMYCES PARADOXUS;

EID: 84883006832     PISSN: None     EISSN: 21601836     Source Type: Journal    
DOI: 10.1534/g3.111.000273     Document Type: Article
Times cited : (248)

References (95)
  • 2
    • 0030801002 scopus 로고    scopus 로고
    • Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
    • Altschul, S. F., T. L. Madden, A. A. Schaffer, J. Zhang, Z. Zhang et al., 1997 Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25: 3389-3402.
    • Nucleic Acids Res. , vol.25 , pp. 3389-3402
    • Altschul, S.F.1    Madden, T.L.2    Schaffer, A.A.3    Zhang, J.4    Zhang, Z.5
  • 3
    • 77953233453 scopus 로고    scopus 로고
    • Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines
    • Atwell, S., Y. S. Huang, B. J. Vilhjalmsson, G. Willems, M. Horton et al., 2010 Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines. Nature. 465: 627-631.
    • (2010) Nature. , vol.465 , pp. 627-631
    • Atwell, S.1    Huang, Y.S.2    Vilhjalmsson, B.J.3    Willems, G.4    Horton, M.5
  • 5
    • 77950388941 scopus 로고    scopus 로고
    • Polygenic and directional regulatory evolution across pathways in Saccharomyces
    • USA
    • Bullard, J. H., Y. Mostovoy, S. Dudoit, and R. B. Brem, 2010 Polygenic and directional regulatory evolution across pathways in Saccharomyces. Proc. Natl. Acad. Sci. USA 107: 5058-5063.
    • (2010) Proc.Natl. Acad. Sci. , vol.107 , pp. 5058-5063
    • Bullard, J.H.1    Mostovoy, Y.2    Dudoit, S.3    Brem, R.B.4
  • 6
    • 66649105285 scopus 로고    scopus 로고
    • Evolution of pathogenicity and sexual reproduction in eight Candida genomes
    • Butler, G., M. D. Rasmussen, M. F. Lin, M. A. Santos, S. Sakthikumar et al., 2009 Evolution of pathogenicity and sexual reproduction in eight Candida genomes. Nature. 459: 657-662.
    • (2009) Nature. , vol.459 , pp. 657-662
    • Butler, G.1    Rasmussen, M.D.2    Lin, M.F.3    Santos, M.A.4    Sakthikumar, S.5
  • 7
    • 25844471721 scopus 로고    scopus 로고
    • The Yeast Gene Order Browser: combining curated homology and syntenic context reveals gene fate in polyploid species
    • Byrne, K. P., and K. H. Wolfe, 2005 The Yeast Gene Order Browser: combining curated homology and syntenic context reveals gene fate in polyploid species. Genome Res. 15: 1456-1461.
    • (2005) Genome Res. , vol.15 , pp. 1456-1461
    • Byrne, K.P.1    Wolfe, K.H.2
  • 8
    • 33644875753 scopus 로고    scopus 로고
    • Visualizing syntenic relationships among the hemiascomycetes with the Yeast Gene Order Browser
    • Byrne, K. P., and K. H. Wolfe, 2006 Visualizing syntenic relationships among the hemiascomycetes with the Yeast Gene Order Browser. Nucleic Acids Res. 34: D452-D455.
    • (2006) Nucleic Acids Res. , vol.34
    • Byrne, K.P.1    Wolfe, K.H.2
  • 9
    • 0036137277 scopus 로고    scopus 로고
    • DNA sequence quality trimming and vector removal
    • Chou, H. H., and M. H. Holmes, 2001 DNA sequence quality trimming and vector removal. Bioinformatics. 17: 1093-1104.
    • (2001) Bioinformatics. , vol.17 , pp. 1093-1104
    • Chou, H.H.1    Holmes, M.H.2
  • 10
    • 77955041686 scopus 로고    scopus 로고
    • Multiple molecular mechanisms cause reproductive isolation between three yeast species
    • Chou, J. Y., Y. S. Hung, K. H. Lin, H. Y. Lee, and J. Y. Leu, 2010 Multiple molecular mechanisms cause reproductive isolation between three yeast species. PLoS Biol. 8: e1000432.
    • (2010) PLoS Biol. , vol.8
    • Chou, J.Y.1    Hung, Y.S.2    Lin, K.H.3    Lee, H.Y.4    Leu, J.Y.5
  • 11
    • 77951726798 scopus 로고    scopus 로고
    • Speciation through cytonuclear incompatibility: insights from yeast and implications for higher eukaryotes
    • Chou, J. Y., and J. Y. Leu, 2010 Speciation through cytonuclear incompatibility: insights from yeast and implications for higher eukaryotes. Bioessays. 32: 401-411.
    • (2010) Bioessays. , vol.32 , pp. 401-411
    • Chou, J.Y.1    Leu, J.Y.2
  • 12
    • 47149117454 scopus 로고    scopus 로고
    • Evolution of genes and genomes on the Drosophila phylogeny
    • Clark, A. G., M. B. Eisen, D. R. Smith, C. M. Bergman, B. Oliver et al., 2007 Evolution of genes and genomes on the Drosophila phylogeny. Nature. 450: 203-218.
    • (2007) Nature. , vol.450 , pp. 203-218
    • Clark, A.G.1    Eisen, M.B.2    Smith, D.R.3    Bergman, C.M.4    Oliver, B.5
  • 13
    • 0038724989 scopus 로고    scopus 로고
    • Finding functional features in Saccharomyces genomes by phylogenetic footprinting
    • Cliften, P., P. Sudarsanam, A. Desikan, L. Fulton, B. Fulton et al., 2003 Finding functional features in Saccharomyces genomes by phylogenetic footprinting. Science. 301: 71-76.
    • (2003) Science. , vol.301 , pp. 71-76
    • Cliften, P.1    Sudarsanam, P.2    Desikan, A.3    Fulton, L.4    Fulton, B.5
  • 14
    • 33644783716 scopus 로고    scopus 로고
    • After the duplication: gene loss and adaptation in Saccharomyces genomes
    • Cliften, P. F., R. S. Fulton, R. K. Wilson, and M. Johnston, 2006 After the duplication: gene loss and adaptation in Saccharomyces genomes. Genetics. 172: 863-872.
    • (2006) Genetics. , vol.172 , pp. 863-872
    • Cliften, P.F.1    Fulton, R.S.2    Wilson, R.K.3    Johnston, M.4
  • 15
    • 70350537273 scopus 로고    scopus 로고
    • Generation of a large set of genetically tractable haploid and diploid Saccharomyces strains
    • Cubillos, F. A., E. J. Louis, and G. Liti, 2009 Generation of a large set of genetically tractable haploid and diploid Saccharomyces strains. FEM. Yeast Res. 9: 1217-1225.
    • (2009) FEM.Yeast Res. , vol.9 , pp. 1217-1225
    • Cubillos, F.A.1    Louis, E.J.2    Liti, G.3
  • 16
    • 11144355642 scopus 로고    scopus 로고
    • The Ashbya gossypii genome as a tool for mapping the ancient Saccharomyces cerevisiae genome
    • Dietrich, F. S., S. Voegeli, S. Brachat, A. Lerch, K. Gates et al., 2004 The Ashbya gossypii genome as a tool for mapping the ancient Saccharomyces cerevisiae genome. Science. 304: 304-307.
    • (2004) Science. , vol.304 , pp. 304-307
    • Dietrich, F.S.1    Voegeli, S.2    Brachat, S.3    Lerch, A.4    Gates, K.5
  • 19
    • 38649110663 scopus 로고    scopus 로고
    • BEAST: Bayesian evolutionary analysis by sampling trees
    • Drummond, A. J., and A. Rambaut, 2007 BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evol. Biol. 7: 214.
    • (2007) BMC Evol.Biol. , vol.7 , pp. 214
    • Drummond, A.J.1    Rambaut, A.2
  • 20
    • 77953754620 scopus 로고    scopus 로고
    • Yeast evolutionary genomics
    • Dujon, B., 2010 Yeast evolutionary genomics. Nat. Rev. Genet. 11: 512-524. Dujon, B., 2006 Yeasts illustrate the molecular mechanisms of eukaryotic genome evolution. Trends Genet. 22: 375-387.
    • (2010) Nat.Rev. Genet. , vol.11 , pp. 512-524
    • Dujon, B.1
  • 21
    • 33745736295 scopus 로고    scopus 로고
    • Yeasts illustrate the molecular mechanisms of eukaryotic genome evolution
    • Dujon, B., 2006 Yeasts illustrate the molecular mechanisms of eukaryotic genome evolution. Trends Genet. 22: 375-387.
    • (2006) Trends Genet. , vol.22 , pp. 375-387
    • Dujon, B.1
  • 23
    • 77952988108 scopus 로고    scopus 로고
    • A new generation of homology search tools based on probabilistic inference
    • Eddy, S. R., 2009 A new generation of homology search tools based on probabilistic inference. Genome Inform. 23: 205-211.
    • (2009) Genome Inform. , vol.23 , pp. 205-211
    • Eddy, S.R.1
  • 25
    • 0031978181 scopus 로고    scopus 로고
    • Base-calling of automated sequencer traces using phred
    • Ewing, B., and P. Green, 1998 Base-calling of automated sequencer traces using phred. II. Error probabilities. Genome Res. 8: 186-194.
    • (1998) II.Error probabilities. Genome Res. , vol.8 , pp. 186-194
    • Ewing, B.1    Green, P.2
  • 26
    • 25444530606 scopus 로고    scopus 로고
    • Hypervariable noncoding sequences in Saccharomyces cerevisiae
    • Fay, J. C., and J. A. Benavides, 2005 Hypervariable noncoding sequences in Saccharomyces cerevisiae. Genetics. 170: 1575-1587.
    • (2005) Genetics. , vol.170 , pp. 1575-1587
    • Fay, J.C.1    Benavides, J.A.2
  • 29
    • 67650337476 scopus 로고    scopus 로고
    • Elaboration, diversification and regulation of the Sir1 family of silencing proteins in Saccharomyces
    • Gallagher, J. E., J. E. Babiarz, L. Teytelman, K. H. Wolfe, and J. Rine, 2009 Elaboration, diversification and regulation of the Sir1 family of silencing proteins in Saccharomyces. Genetics. 181: 1477-1491.
    • (2009) Genetics. , vol.181 , pp. 1477-1491
    • Gallagher, J.E.1    Babiarz, J.E.2    Teytelman, L.3    Wolfe, K.H.4    Rine, J.5
  • 30
    • 14044252090 scopus 로고    scopus 로고
    • Conservation and evolution of cis-regulatory systems in ascomycete fungi
    • Gasch, A. P., A. M. Moses, D. Y. Chiang, H. B. Fraser, M. Berardini et al., 2004 Conservation and evolution of cis-regulatory systems in ascomycete fungi. PLoS Biol. 2: e398.
    • (2004) PLoS Biol. , vol.2
    • Gasch, A.P.1    Moses, A.M.2    Chiang, D.Y.3    Fraser, H.B.4    Berardini, M.5
  • 31
    • 58849139595 scopus 로고    scopus 로고
    • Genetic interactions between transcription factors cause natural variation in yeast
    • Gerke, J., K. Lorenz, and B. Cohen, 2009 Genetic interactions between transcription factors cause natural variation in yeast. Science. 323: 498-501.
    • (2009) Science. , vol.323 , pp. 498-501
    • Gerke, J.1    Lorenz, K.2    Cohen, B.3
  • 33
    • 0032873415 scopus 로고    scopus 로고
    • Three new dominant drug resistance cassettes for gene disruption in Saccharomyces cerevisiae
    • Goldstein, A. L., and J. H. McCusker, 1999 Three new dominant drug resistance cassettes for gene disruption in Saccharomyces cerevisiae. Yeast. 15: 1541-1553.
    • (1999) Yeast. , vol.15 , pp. 1541-1553
    • Goldstein, A.L.1    McCusker, J.H.2
  • 35
    • 67149106149 scopus 로고    scopus 로고
    • Additions, losses, and rearrangements on the evolutionary route from a reconstructed ancestor to the modern Saccharomyces cerevisiae genome
    • Gordon, J. L., K. P. Byrne, and K. H. Wolfe, 2009 Additions, losses, and rearrangements on the evolutionary route from a reconstructed ancestor to the modern Saccharomyces cerevisiae genome. PLoS Genet. 5: e1000485.
    • (2009) PLoS Genet. , vol.5
    • Gordon, J.L.1    Byrne, K.P.2    Wolfe, K.H.3
  • 36
    • 57749178593 scopus 로고    scopus 로고
    • Reproductive isolation in Saccharomyces
    • Greig, D., 2009 Reproductive isolation in Saccharomyces. Heredity. 102: 39-44.
    • (2009) Heredity. , vol.102 , pp. 39-44
    • Greig, D.1
  • 37
    • 0037195624 scopus 로고    scopus 로고
    • Hybrid speciation in experimental populations of yeast
    • Greig, D., E. J. Louis, R. H. Borts, and M. Travisano, 2002 Hybrid speciation in experimental populations of yeast. Science. 298: 1773-1775.
    • (2002) Science. , vol.298 , pp. 1773-1775
    • Greig, D.1    Louis, E.J.2    Borts, R.H.3    Travisano, M.4
  • 38
    • 0037546919 scopus 로고    scopus 로고
    • A role for the mismatch repair system during incipient speciation in Saccharomyces
    • Greig, D., M. Travisano, E. J. Louis, and R. H. Borts, 2003 A role for the mismatch repair system during incipient speciation in Saccharomyces. J. Evol. Biol. 16: 429-437.
    • (2003) J.Evol. Biol. , vol.16 , pp. 429-437
    • Greig, D.1    Travisano, M.2    Louis, E.J.3    Borts, R.H.4
  • 39
    • 77950850438 scopus 로고    scopus 로고
    • Systematic planning of genome-scale experiments in poorly studied species
    • Guan, Y., M. Dunham, A. Caudy, and O. Troyanskaya, 2010 Systematic planning of genome-scale experiments in poorly studied species. PLOS Comput. Biol. 6: e1000698.
    • (2010) PLOS Comput.Biol. , vol.6
    • Guan, Y.1    Dunham, M.2    Caudy, A.3    Troyanskaya, O.4
  • 40
    • 34247847827 scopus 로고    scopus 로고
    • Functional analysis of gene duplications in Saccharomyces cerevisiae
    • Guan, Y., M. J. Dunham, and O. G. Troyanskaya, 2007 Functional analysis of gene duplications in Saccharomyces cerevisiae. Genetics. 175: 933-943.
    • (2007) Genetics. , vol.175 , pp. 933-943
    • Guan, Y.1    Dunham, M.J.2    Troyanskaya, O.G.3
  • 41
    • 0029994841 scopus 로고    scopus 로고
    • A new efficient gene disruption cassette for repeated use in budding yeast
    • Guldener, U., S. Heck, T. Fielder, J. Beinhauer, and J. H. Hegemann, 1996 A new efficient gene disruption cassette for repeated use in budding yeast. Nucleic Acids Res. 24: 2519-2524.
    • (1996) Nucleic Acids Res. , vol.24 , pp. 2519-2524
    • Guldener, U.1    Heck, S.2    Fielder, T.3    Beinhauer, J.4    Hegemann, J.H.5
  • 42
    • 37249016359 scopus 로고    scopus 로고
    • The reacquisition of biotin prototrophy in Saccharomyces cerevisiae involved horizontal gene transfer, gene duplication and gene clustering
    • Hall, C., and F. S. Dietrich, 2007 The reacquisition of biotin prototrophy in Saccharomyces cerevisiae involved horizontal gene transfer, gene duplication and gene clustering. Genetics. 177: 2293-2307.
    • (2007) Genetics. , vol.177 , pp. 2293-2307
    • Hall, C.1    Dietrich, F.S.2
  • 43
    • 77950863293 scopus 로고    scopus 로고
    • Remarkably ancient balanced polymorphisms in a multi-locus gene network
    • Hittinger, C. T., P. Goncalves, J. P. Sampaio, J. Dover, M. Johnston et al., 2010 Remarkably ancient balanced polymorphisms in a multi-locus gene network. Nature. 464: 54-58.
    • (2010) Nature. , vol.464 , pp. 54-58
    • Hittinger, C.T.1    Goncalves, P.2    Sampaio, J.P.3    Dover, J.4    Johnston, M.5
  • 44
    • 4644304792 scopus 로고    scopus 로고
    • Parallel inactivation of multiple GAL pathway genes and ecological diversification in yeasts
    • USA
    • Hittinger, C. T., A. Rokas, and S. B. Carroll, 2004 Parallel inactivation of multiple GAL pathway genes and ecological diversification in yeasts. Proc. Natl. Acad. Sci. USA 101: 14144-14149.
    • (2004) Proc.Natl. Acad. Sci. , vol.101 , pp. 14144-14149
    • Hittinger, C.T.1    Rokas, A.2    Carroll, S.B.3
  • 45
    • 1942452749 scopus 로고    scopus 로고
    • Proof and evolutionary analysis of ancient genome duplication in the yeast Saccharomyces cerevisiae
    • Kellis, M., B. W. Birren, and E. S. Lander, 2004 Proof and evolutionary analysis of ancient genome duplication in the yeast Saccharomyces cerevisiae. Nature. 428: 617-624.
    • (2004) Nature. , vol.428 , pp. 617-624
    • Kellis, M.1    Birren, B.W.2    Lander, E.S.3
  • 46
    • 0038349948 scopus 로고    scopus 로고
    • Sequencing and comparison of yeast species to identify genes and regulatory elements
    • Kellis, M., N. Patterson, M. Endrizzi, B. Birren, and E. S. Lander, 2003 Sequencing and comparison of yeast species to identify genes and regulatory elements. Nature. 423: 241-254.
    • (2003) Nature. , vol.423 , pp. 241-254
    • Kellis, M.1    Patterson, N.2    Endrizzi, M.3    Birren, B.4    Lander, E.S.5
  • 47
    • 0037540048 scopus 로고    scopus 로고
    • Phylogenetic relationships among yeasts of the 'Saccharomyces complex' determined from multigene sequence analyses
    • Kurtzman, C. P., and C. J. Robnett, 2003 Phylogenetic relationships among yeasts of the 'Saccharomyces complex' determined from multigene sequence analyses. FEM. Yeast Res. 3: 417-432.
    • (2003) FEM.Yeast Res. , vol.3 , pp. 417-432
    • Kurtzman, C.P.1    Robnett, C.J.2
  • 48
    • 55449107183 scopus 로고    scopus 로고
    • Variations in stress sensitivity and genomic expression in diverse S
    • Kvitek, D. J., J. L. Will, and A. P. Gasch, 2008 Variations in stress sensitivity and genomic expression in diverse S. cerevisiae isolates. PLoS Genet. 4: e1000223.
    • (2008) cerevisiae isolates.PLoS Genet. , vol.4
    • Kvitek, D.J.1    Will, J.L.2    Gasch, A.P.3
  • 49
    • 57149133795 scopus 로고    scopus 로고
    • Incompatibility of nuclear and mitochondrial genomes causes hybrid sterility between two yeast species
    • Lee, H. Y., J. Y. Chou, L. Cheong, N. H. Chang, S. Y. Yang et al., 2008 Incompatibility of nuclear and mitochondrial genomes causes hybrid sterility between two yeast species. Cell. 135: 1065-1073.
    • (2008) Cell. , vol.135 , pp. 1065-1073
    • Lee, H.Y.1    Chou, J.Y.2    Cheong, L.3    Chang, N.H.4    Yang, S.Y.5
  • 51
    • 75649124547 scopus 로고    scopus 로고
    • De novo assembly of human genomes with massively parallel short read sequencing
    • Li, R., H. Zhu, J. Ruan, W. Qian, X. Fang et al., 2010 De novo assembly of human genomes with massively parallel short read sequencing. Genome Res. 20: 265-272.
    • (2010) Genome Res. , vol.20 , pp. 265-272
    • Li, R.1    Zhu, H.2    Ruan, J.3    Qian, W.4    Fang, X.5
  • 52
    • 33750437730 scopus 로고    scopus 로고
    • Sequence diversity, reproductive isolation and species concepts in Saccharomyces
    • Liti, G., D. B. Barton, and E. J. Louis, 2006 Sequence diversity, reproductive isolation and species concepts in Saccharomyces. Genetics. 174: 839-850.
    • (2006) Genetics. , vol.174 , pp. 839-850
    • Liti, G.1    Barton, D.B.2    Louis, E.J.3
  • 54
    • 0029914164 scopus 로고    scopus 로고
    • Saccharomyces cerevisiae S288C has a mutation in FLO8, a gene required for filamentous growth
    • Liu, H., C. A. Styles, and G. R. Fink, 1996 Saccharomyces cerevisiae S288C has a mutation in FLO8, a gene required for filamentous growth. Genetics. 144: 967-978.
    • (1996) Genetics. , vol.144 , pp. 967-978
    • Liu, H.1    Styles, C.A.2    Fink, G.R.3
  • 55
    • 0031820288 scopus 로고    scopus 로고
    • Additional modules for versatile and economical PCR-based gene deletion and modification in Saccharomyces cerevisiae
    • Longtine, M. S., A. McKenzie 3rd, D. J. Demarini, N. G. Shah, A. Wach et al., 1998 Additional modules for versatile and economical PCR-based gene deletion and modification in Saccharomyces cerevisiae. Yeast. 14: 953- 961.
    • (1998) Yeast. , vol.14
    • Longtine, M.S.1    McKenzie, A.2    Demarini, D.J.3    Shah, N.G.4    Wach, A.5
  • 56
    • 0029417194 scopus 로고
    • The chromosome ends of Saccharomyces cerevisiae
    • Louis, E. J., 1995 The chromosome ends of Saccharomyces cerevisiae. Yeast. 11: 1553-1573.
    • (1995) Yeast. , vol.11 , pp. 1553-1573
    • Louis, E.J.1
  • 57
    • 0030854739 scopus 로고    scopus 로고
    • tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence
    • Lowe, T. M., and S. R. Eddy, 1997 tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res. 25: 955-964.
    • (1997) Nucleic Acids Res. , vol.25 , pp. 955-964
    • Lowe, T.M.1    Eddy, S.R.2
  • 58
    • 0034634395 scopus 로고    scopus 로고
    • The evolutionary fate and consequences of duplicate genes
    • Lynch, M., and J. S. Conery, 2000 The evolutionary fate and consequences of duplicate genes. Science. 290: 1151-1155.
    • (2000) Science. , vol.290 , pp. 1151-1155
    • Lynch, M.1    Conery, J.S.2
  • 59
    • 0031657475 scopus 로고    scopus 로고
    • New hybrids between Saccharomyces sensu stricto yeast species found among wine and cider production strains
    • Masneuf, I., J. Hansen, C. Groth, J. Piskur, and D. Dubourdieu, 1998 New hybrids between Saccharomyces sensu stricto yeast species found among wine and cider production strains. Appl. Environ. Microbiol. 64: 3887- 3892.
    • (1998) Appl.Environ. Microbiol. , vol.64
    • Masneuf, I.1    Hansen, J.2    Groth, C.3    Piskur, J.4    Dubourdieu, D.5
  • 61
    • 67649602562 scopus 로고    scopus 로고
    • Genome sequence of the lager brewing yeast, an interspecies hybrid
    • Nakao, Y., T. Kanamori, T. Itoh, Y. Kodama, S. Rainieri et al., 2009 Genome sequence of the lager brewing yeast, an interspecies hybrid. DNA Res. 16: 115-129.
    • (2009) DNA Res. , vol.16 , pp. 115-129
    • Nakao, Y.1    Kanamori, T.2    Itoh, T.3    Kodama, Y.4    Rainieri, S.5
  • 62
    • 0033814080 scopus 로고    scopus 로고
    • Three new species in the Saccharomyces sensu stricto complex: Saccharomyces cariocanus, Saccharomyces kudriavzevii and Saccharomyces mikatae
    • Naumov, G. I., S. A. James, E. S. Naumova, E. J. Louis, and I. N. Roberts, 2000 Three new species in the Saccharomyces sensu stricto complex: Saccharomyces cariocanus, Saccharomyces kudriavzevii and Saccharomyces mikatae. Int. J. Syst. Evol. Microbiol. 501Pt 5: 1931-1942
    • (2000) Int.J. Syst. Evol. Microbiol. , vol.50 , Issue.5 , pp. 1931-1942
    • Naumov, G.I.1    James, S.A.2    Naumova, E.S.3    Louis, E.J.4    Roberts, I.N.5
  • 63
    • 80052048400 scopus 로고    scopus 로고
    • From sequence to function: insights from natural variation in budding yeasts
    • DOI:10.1016/j.bbagen.2011.02.004
    • Nieduszynski C. A., and G. Liti, 2011 From sequence to function: insights from natural variation in budding yeasts. Biochim. Biophys. Acta. DOI:10.1016/j.bbagen.2011.02.004
    • (2011) Biochim.Biophys. Acta.
    • Nieduszynski, C.A.1    Liti, G.2
  • 64
    • 67651119869 scopus 로고    scopus 로고
    • Fitness and its role in evolutionary genetics
    • Orr, H. A., 2009 Fitness and its role in evolutionary genetics. Nat. Rev. Genet. 10: 531-539.
    • (2009) Nat.Rev. Genet. , vol.10 , pp. 531-539
    • Orr, H.A.1
  • 65
    • 28444462466 scopus 로고    scopus 로고
    • Fishing for the secrets of vertebrate evolution in threespine sticklebacks
    • Peichel, C. L., 2005 Fishing for the secrets of vertebrate evolution in threespine sticklebacks. Dev. Dyn. 234: 815-823.
    • (2005) Dev.Dyn. , vol.234 , pp. 815-823
    • Peichel, C.L.1
  • 66
    • 3242886892 scopus 로고    scopus 로고
    • Yeast genome sequencing: the power of comparative genomics
    • Piskur, J., and R. B. Langkjaer, 2004 Yeast genome sequencing: the power of comparative genomics. Mol. Microbiol. 53: 381-389.
    • (2004) Mol.Microbiol. , vol.53 , pp. 381-389
    • Piskur, J.1    Langkjaer, R.B.2
  • 68
    • 38549173734 scopus 로고    scopus 로고
    • What can comparative genomics tell us about species concepts in the genus Aspergillus? Stud
    • Rokas, A., G. Payne, N. D. Fedorova, S. E. Baker, M. Machida et al., 2007 What can comparative genomics tell us about species concepts in the genus Aspergillus? Stud. Mycol. 59: 11-17.
    • (2007) Mycol. , vol.59 , pp. 11-17
    • Rokas, A.1    Payne, G.2    Fedorova, N.D.3    Baker, S.E.4    Machida, M.5
  • 69
    • 0242365676 scopus 로고    scopus 로고
    • Genome-scale approaches to resolving incongruence in molecular phylogenies
    • Rokas, A., B. L. Williams, N. King, and S. B. Carroll, 2003 Genome-scale approaches to resolving incongruence in molecular phylogenies. Nature. 425: 798-804.
    • (2003) Nature. , vol.425 , pp. 798-804
    • Rokas, A.1    Williams, B.L.2    King, N.3    Carroll, S.B.4
  • 70
    • 42049085470 scopus 로고    scopus 로고
    • Natural populations of Saccharomyces kudriavzevii in Portugal are associated with oak bark and are sympatric with S
    • Sampaio, J. P., and P. Goncalves, 2008 Natural populations of Saccharomyces kudriavzevii in Portugal are associated with oak bark and are sympatric with S. cerevisiae and S. paradoxus. Appl. Environ. Microbiol. 74: 2144-2152.
    • (2008) cerevisiae and S.paradoxus. Appl. Environ. Microbiol. , vol.74 , pp. 2144-2152
    • Sampaio, J.P.1    Goncalves, P.2
  • 71
    • 36949031286 scopus 로고    scopus 로고
    • Yeast genome evolution- the origin of the species
    • Scannell, D. R., G. Butler, and K. H. Wolfe, 2007a Yeast genome evolution- the origin of the species. Yeast. 24: 929-942.
    • (2007) Yeast. , vol.24 , pp. 929-942
    • Scannell, D.R.1    Butler, G.2    Wolfe, K.H.3
  • 72
    • 33645023614 scopus 로고    scopus 로고
    • Multiple rounds of speciation associated with reciprocal gene loss in polyploid yeasts
    • Scannell, D. R., K. P. Byrne, J. L. Gordon, S. Wong, and K. H. Wolfe, 2006 Multiple rounds of speciation associated with reciprocal gene loss in polyploid yeasts. Nature. 440: 341-345.
    • (2006) Nature. , vol.440 , pp. 341-345
    • Scannell, D.R.1    Byrne, K.P.2    Gordon, J.L.3    Wong, S.4    Wolfe, K.H.5
  • 73
    • 34347209089 scopus 로고    scopus 로고
    • Independent sorting-out of thousands of duplicated gene pairs in two yeast species descended from a whole-genome duplication
    • Scannell, D. R., A. C. Frank, G. C. Conant, K. P. Byrne, M. Woolfit et al., 2007b Independent sorting-out of thousands of duplicated gene pairs in two yeast species descended from a whole-genome duplication. Proc. Natl. Acad. Sci. USA 104: 8397-8402.
    • (2007) Proc.Natl. Acad. Sci. USA , vol.104 , pp. 8397-8402
    • Scannell, D.R.1    Frank, A.C.2    Conant, G.C.3    Byrne, K.P.4    Woolfit, M.5
  • 74
    • 38049038829 scopus 로고    scopus 로고
    • A burst of protein sequence evolution and a prolonged period of asymmetric evolution follow gene duplication in yeast
    • Scannell, D. R., and K. H. Wolfe, 2008 A burst of protein sequence evolution and a prolonged period of asymmetric evolution follow gene duplication in yeast. Genome Res. 18: 137-147.
    • (2008) Genome Res. , vol.18 , pp. 137-147
    • Scannell, D.R.1    Wolfe, K.H.2
  • 76
    • 28944450584 scopus 로고    scopus 로고
    • Choosing appropriate substitution models for the phylogenetic analysis of protein-coding sequences
    • Shapiro, B., A. Rambaut, and A. J. Drummond, 2006 Choosing appropriate substitution models for the phylogenetic analysis of protein-coding sequences. Mol. Biol. Evol. 23: 7-9.
    • (2006) Mol.Biol. Evol. , vol.23 , pp. 7-9
    • Shapiro, B.1    Rambaut, A.2    Drummond, A.J.3
  • 77
    • 24044447664 scopus 로고    scopus 로고
    • Automated generation of heuristics for biological sequence comparison
    • Slater, G. S., and E. Birney, 2005 Automated generation of heuristics for biological sequence comparison. BMC Bioinformatics. 6: 31.
    • (2005) BMC Bioinformatics. , vol.6 , pp. 31
    • Slater, G.S.1    Birney, E.2
  • 79
    • 4243088097 scopus 로고    scopus 로고
    • The genome sequence of Caenorhabditis briggsae: a platform for comparative genomics
    • Stein, L. D., Z. Bao, D. Blasiar, T. Blumenthal, M. R. Brent et al., 2003 The genome sequence of Caenorhabditis briggsae: a platform for comparative genomics. PLoS Biol. 1: E45.
    • (2003) PLoS Biol. , vol.1
    • Stein, L.D.1    Bao, Z.2    Blasiar, D.3    Blumenthal, T.4    Brent, M.5
  • 80
    • 0034903337 scopus 로고    scopus 로고
    • In vivo site-directed mutagenesis using oligonucleotides
    • Storici, F., L. K. Lewis, and M. A. Resnick, 2001 In vivo site-directed mutagenesis using oligonucleotides. Nat. Biotechnol. 19: 773-776.
    • (2001) Nat.Biotechnol. , vol.19 , pp. 773-776
    • Storici, F.1    Lewis, L.K.2    Resnick, M.A.3
  • 81
    • 33745225170 scopus 로고    scopus 로고
    • The delitto perfetto approach to in vivo site-directed mutagenesis and chromosome rearrangements with synthetic oligonucleotides in yeast
    • Storici, F., and M. A. Resnick, 2006 The delitto perfetto approach to in vivo site-directed mutagenesis and chromosome rearrangements with synthetic oligonucleotides in yeast. Methods Enzymol. 409: 329-345.
    • (2006) Methods Enzymol. , vol.409 , pp. 329-345
    • Storici, F.1    Resnick, M.A.2
  • 82
    • 34247601439 scopus 로고    scopus 로고
    • Dating divergences in the Fungal Tree of Life: review and new analyses
    • Taylor, J. W., and M. L. Berbee, 2006 Dating divergences in the Fungal Tree of Life: review and new analyses. Mycologia. 98: 838-849.
    • (2006) Mycologia. , vol.98 , pp. 838-849
    • Taylor, J.W.1    Berbee, M.L.2
  • 83
    • 65549086559 scopus 로고    scopus 로고
    • A yeast hybrid provides insight into the evolution of gene expression regulation
    • Tirosh, I., S. Reikhav, A. A. Levy, and N. Barkai, 2009 A yeast hybrid provides insight into the evolution of gene expression regulation. Science. 324: 659-662.
    • (2009) Science. , vol.324 , pp. 659-662
    • Tirosh, I.1    Reikhav, S.2    Levy, A.A.3    Barkai, N.4
  • 85
    • 34547844121 scopus 로고    scopus 로고
    • Automatic genome-wide reconstruction of phylogenetic gene trees
    • Wapinski, I., A. Pfeffer, N. Friedman, and A. Regev, 2007a Automatic genome-wide reconstruction of phylogenetic gene trees. Bioinformatics. 23: i549-i558.
    • (2007) Bioinformatics. , vol.23
    • Wapinski, I.1    Pfeffer, A.2    Friedman, N.3    Regev, A.4
  • 86
    • 34548501747 scopus 로고    scopus 로고
    • Natural history and evolutionary principles of gene duplication in fungi
    • Wapinski, I., A. Pfeffer, N. Friedman, and A. Regev, 2007b Natural history and evolutionary principles of gene duplication in fungi. Nature. 449: 54-61.
    • (2007) Nature. , vol.449 , pp. 54-61
    • Wapinski, I.1    Pfeffer, A.2    Friedman, N.3    Regev, A.4
  • 87
    • 0043123111 scopus 로고    scopus 로고
    • RevTrans: Multiple alignment of coding DNA from aligned amino acid sequences
    • Wernersson, R., and A. G. Pedersen, 2003 RevTrans: Multiple alignment of coding DNA from aligned amino acid sequences. Nucleic Acids Res. 31: 3537-3539.
    • (2003) Nucleic Acids Res. , vol.31 , pp. 3537-3539
    • Wernersson, R.1    Pedersen, A.G.2
  • 88
    • 39149120619 scopus 로고    scopus 로고
    • Figaro: a novel statistical method for vector sequence removal
    • White, J. R., M. Roberts, J. A. Yorke, and M. Pop, 2008 Figaro: a novel statistical method for vector sequence removal. Bioinformatics. 24: 462-467.
    • (2008) Bioinformatics. , vol.24 , pp. 462-467
    • White, J.R.1    Roberts, M.2    Yorke, J.A.3    Pop, M.4
  • 89
    • 77952332278 scopus 로고    scopus 로고
    • Incipient balancing selection through adaptive loss of aquaporins in natural Saccharomyces cerevisiae populations
    • Will, J. L., H. S. Kim, J. Clarke, J. C. Painter, J. C. Fay et al., 2010 Incipient balancing selection through adaptive loss of aquaporins in natural Saccharomyces cerevisiae populations. PLoS Genet. 6: e1000893.
    • (2010) PLoS Genet. , vol.6
    • Will, J.L.1    Kim, H.S.2    Clarke, J.3    Painter, J.C.4    Fay, J.C.5
  • 90
    • 0030947344 scopus 로고    scopus 로고
    • Molecular evidence for an ancient duplication of the entire yeast genome
    • Wolfe, K. H., and D. C. Shields, 1997 Molecular evidence for an ancient duplication of the entire yeast genome. Nature. 387: 708-713.
    • (1997) Nature. , vol.387 , pp. 708-713
    • Wolfe, K.H.1    Shields, D.C.2
  • 91
  • 92
    • 34547803197 scopus 로고    scopus 로고
    • PAML 4: phylogenetic analysis by maximum likelihood
    • Yang, Z., 2007 PAML 4: phylogenetic analysis by maximum likelihood. Mol. Biol. Evol. 24: 1586-1591.
    • (2007) Mol.Biol. Evol. , vol.24 , pp. 1586-1591
    • Yang, Z.1
  • 93
    • 43149115851 scopus 로고    scopus 로고
    • Velvet: algorithms for de novo short read assembly using de Bruijn graphs
    • Zerbino, D. R., and E. Birney, 2008 Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res. 18: 821-829.
    • (2008) Genome Res. , vol.18 , pp. 821-829
    • Zerbino, D.R.1    Birney, E.2
  • 94
    • 45349098761 scopus 로고    scopus 로고
    • Interspecies variation reveals a conserved repressor of alpha-specific genes in Saccharomyces yeasts
    • Zill, O. A., and J. Rine, 2008 Interspecies variation reveals a conserved repressor of alpha-specific genes in Saccharomyces yeasts. Genes Dev. 22: 1704-1716.
    • (2008) Genes Dev. , vol.22 , pp. 1704-1716
    • Zill, O.A.1    Rine, J.2
  • 95
    • 78649980458 scopus 로고    scopus 로고
    • Co-evolution of transcriptional silencing proteins and the DNA elements specifying their assembly
    • Zill, O. A., D. Scannell, L. Teytelman, and J. Rine, 2010 Co-evolution of transcriptional silencing proteins and the DNA elements specifying their assembly. PLoS Biol. 8: e1000550
    • (2010) PLoS Biol. , vol.8
    • Zill, O.A.1    Scannell, D.2    Teytelman, L.3    Rine, J.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.