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Volumn 5, Issue , 2014, Pages

A Gondwanan imprint on global diversity and domestication of wine and cider yeast Saccharomyces uvarum

Author keywords

[No Author keywords available]

Indexed keywords

ASPARAGINE; NITROGEN; NITROGEN DERIVATIVE; FUNGAL DNA;

EID: 84901925216     PISSN: None     EISSN: 20411723     Source Type: Journal    
DOI: 10.1038/ncomms5044     Document Type: Article
Times cited : (179)

References (69)
  • 3
    • 84876783002 scopus 로고    scopus 로고
    • Saccharomyces diversity and evolution: A budding model genus
    • Hittinger, C. T. Saccharomyces diversity and evolution: a budding model genus. Trends Genet. 29, 309-317 (2013).
    • (2013) Trends Genet. , vol.29 , pp. 309-317
    • Hittinger, C.T.1
  • 4
    • 42049085470 scopus 로고    scopus 로고
    • Natural populations of Saccharomyces kudriavzevii in Portugal are associated with Oak bark and are sympatric with S. Cerevisiae and S. Paradoxus
    • DOI 10.1128/AEM.02396-07
    • Sampaio, J. P. & Gonçalves, P. Natural populations of Saccharomyces kudriavzevii in Portugal are associated with oak bark and are sympatric with S. cerevisiae and S. paradoxus. Appl. Environ. Microbiol. 74, 2144-2152 (2008). (Pubitemid 351522069)
    • (2008) Applied and Environmental Microbiology , vol.74 , Issue.7 , pp. 2144-2152
    • Sampaio, J.P.1    Goncalves, P.2
  • 5
    • 84868206362 scopus 로고    scopus 로고
    • Surprisingly diverged populations of Saccharomyces cerevisiae in natural environments remote from human activity
    • Wang, Q. M., Liu,W. Q., Liti, G., Wang, S. A. & Bai, F. Y. Surprisingly diverged populations of Saccharomyces cerevisiae in natural environments remote from human activity. Mol. Ecol. 21, 5404-5417 (2012).
    • (2012) Mol. Ecol. , vol.21 , pp. 5404-5417
    • Wang, Q.M.1    Liu, W.Q.2    Liti, G.3    Wang, S.A.4    Bai, F.Y.5
  • 6
    • 62649089109 scopus 로고    scopus 로고
    • Population genomics of domestic and wild yeasts
    • Liti, G. et al. Population genomics of domestic and wild yeasts. Nature 458, 337-341 (2009).
    • (2009) Nature , vol.458 , pp. 337-341
    • Liti, G.1
  • 7
    • 84890831000 scopus 로고    scopus 로고
    • Genomic sequence diversity and population structure of Saccharomyces cerevisiae Assessed by RAD-seq
    • Cromie, G. A. et al. Genomic sequence diversity and population structure of Saccharomyces cerevisiae Assessed by RAD-seq. G3 (Bethesda) 3, 2163-2171 (2013).
    • (2013) G3 (Bethesda) , vol.3 , pp. 2163-2171
    • Cromie, G.A.1
  • 8
    • 62649126517 scopus 로고    scopus 로고
    • Comprehensive polymorphism survey elucidates population structure of Saccharomyces cerevisiae
    • Schacherer, J., Shapiro, J., Ruderfer, D. M. & Kruglyak, L. Comprehensive polymorphism survey elucidates population structure of Saccharomyces cerevisiae. Nature 458, 342-345 (2009).
    • (2009) Nature , vol.458 , pp. 342-345
    • Schacherer, J.1    Shapiro, J.2    Ruderfer, D.M.3    Kruglyak, L.4
  • 9
    • 84897883016 scopus 로고    scopus 로고
    • A high-definition view of functional genetic variation from natural yeast genomes
    • Bergström, A. et al. A high-definition view of functional genetic variation from natural yeast genomes. Mol. Biol. Evol. 31, 872-888 (2014).
    • (2014) Mol Biol. Evol. , vol.31 , pp. 872-888
    • Bergström, A.1
  • 10
    • 84878462125 scopus 로고    scopus 로고
    • Mixing of vineyard and oak-tree ecotypes of Saccharomyces cerevisiae in North American vineyards
    • Hyma, K. E. & Fay, J. C. Mixing of vineyard and oak-tree ecotypes of Saccharomyces cerevisiae in North American vineyards. Mol. Ecol. 22, 2917-2930 (2013).
    • (2013) Mol. Ecol. , vol.22 , pp. 2917-2930
    • Hyma, K.E.1    Fay, J.C.2
  • 11
    • 53549098548 scopus 로고    scopus 로고
    • Reconstruction of the genome origins and evolution of the hybrid lager yeast Saccharomyces pastorianus
    • Dunn, B. & Sherlock, G. Reconstruction of the genome origins and evolution of the hybrid lager yeast Saccharomyces pastorianus. Genome Res. 18, 1610-1623 (2008).
    • (2008) Genome Res. , vol.18 , pp. 1610-1623
    • Dunn, B.1    Sherlock, G.2
  • 12
    • 80052293238 scopus 로고    scopus 로고
    • Microbe domestication and the identification of the wild genetic stock of lager-brewing yeast
    • Libkind, D. et al. Microbe domestication and the identification of the wild genetic stock of lager-brewing yeast. Proc. Natl Acad. Sci. USA 108, 14539-14544 (2011).
    • (2011) Proc. Natl Acad. Sci. USA , vol.108 , pp. 14539-14544
    • Libkind, D.1
  • 13
    • 33751260855 scopus 로고    scopus 로고
    • Natural hybrids from Saccharomyces cerevisiae, Saccharomyces bayanus and Saccharomyces kudriavzevii in wine fermentations
    • DOI 10.1111/j.1567-1364.2006.00126.x
    • González, S. S., Barrio, E., Gafner, J. & Querol, A. Natural hybrids from Saccharomyces cerevisiae, Saccharomyces bayanus and Saccharomyces kudriavzevii in wine fermentations. FEMS Yeast Res. 6, 1221-1234 (2006). (Pubitemid 44800319)
    • (2006) FEMS Yeast Research , vol.6 , Issue.8 , pp. 1221-1234
    • Gonzalez, S.S.1    Barrio, E.2    Gafner, J.3    Querol, A.4
  • 14
    • 34547897386 scopus 로고    scopus 로고
    • Genetically different wine yeasts isolated from Austrian vine-growing regions influence wine aroma differently and contain putative hybrids between Saccharomyces cerevisiae and Saccharomyces kudriavzevii
    • DOI 10.1111/j.1567-1364.2007.00240.x
    • Lopandic, K. et al. Genetically different wine yeasts isolated from Austrian vine-growing regions influence wine aroma differently and contain putative hybrids between Saccharomyces cerevisiae and Saccharomyces kudriavzevii. FEMS Yeast Res. 7, 953-965 (2007). (Pubitemid 47256355)
    • (2007) FEMS Yeast Research , vol.7 , Issue.6 , pp. 953-965
    • Lopandic, K.1    Gangl, H.2    Wallner, E.3    Tscheik, G.4    Leitner, G.5    Querol, A.6    Borth, N.7    Breitenbach, M.8    Prillinger, H.9    Tiefenbrunner, W.10
  • 15
    • 42349105178 scopus 로고    scopus 로고
    • Molecular characterization of new natural hybrids of Saccharomyces cerevisiae and S. Kudriavzevii in brewing
    • DOI 10.1128/AEM.01867-07
    • González, S. S., Barrio, E. & Querol, A. Molecular characterization of new natural hybrids of Saccharomyces cerevisiae and S. kudriavzevii in brewing. Appl. Environ. Microbiol. 74, 2314-2320 (2008). (Pubitemid 351555441)
    • (2008) Applied and Environmental Microbiology , vol.74 , Issue.8 , pp. 2314-2320
    • Gonzalez, S.S.1    Barrio, E.2    Querol, A.3
  • 16
    • 0006004427 scopus 로고
    • Identification and enological characteristics of cryophilic wine yeasts
    • Kishimoto, M., Shinohara, T., Soma, E. & Goto, S. Identification and enological characteristics of cryophilic wine yeasts. J. Brew. Soc. Jpn 88, 708-713 (1993).
    • (1993) J. Brew. Soc. Jpn , vol.88 , pp. 708-713
    • Kishimoto, M.1    Shinohara, T.2    Soma, E.3    Goto, S.4
  • 17
  • 20
    • 0347069825 scopus 로고    scopus 로고
    • Hybrids saccharomyces cerevisiae x Saccharomyces bayanus var uvarum having a high liberating ability of some sulfur varietal aromas of vitis vinifera sauvignon blanc wines
    • Masneuf, I., Murat, M. L., Naumov, G. I., Tominaga, T. & Dubourdieu, D. Hybrids Saccharomyces cerevisiae X Saccharomyces bayanus var. uvarum having a high liberating ability of some sulfur varietal aroms of Vitis vinifera Sauvignon blanc wines. J. Int. Sci. Vigne Vin. 36, 205-212 (2002). (Pubitemid 135712138)
    • (2002) Journal International des Sciences de la Vigne et du Vin , vol.36 , Issue.4 , pp. 205-212
    • Masneuf, I.1    Murat, M.-L.2    Naumov, G.I.3    Tominaga, T.4    Dubourdieu, D.5
  • 21
    • 84877734723 scopus 로고    scopus 로고
    • Yeast proteome variations reveal different adaptive responses to grape must fermentation
    • Blein-Nicolas, M. et al. Yeast proteome variations reveal different adaptive responses to grape must fermentation. Mol. Biol. Evol. 30, 1368-1383 (2013).
    • (2013) Mol. Biol. Evol. , vol.30 , pp. 1368-1383
    • Blein-Nicolas, M.1
  • 23
    • 0033780212 scopus 로고    scopus 로고
    • Association of Saccharomyces bayanus var uvarum with some French wines: Genetic analysis of yeast population
    • Naumov, G. I., Masneuf, I., Naumova, E. S., Aigle, M. & Dubourdieu, D. Association of Saccharomyces bayanus var. uvarum with some French wines: genetic analysis of yeast population. Res. Microbiol. 151, 683-691 (2000).
    • (2000) Res. Microbiol. , vol.151 , pp. 683-691
    • Naumov, G.I.1    Masneuf, I.2    Naumova, E.S.3    Aigle, M.4    Dubourdieu, D.5
  • 26
    • 9644283045 scopus 로고    scopus 로고
    • Predominance of Saccharomyces uvarum during spontaneous alcoholic fermentation, for three consecutive years, in an Alsatian winery
    • DOI 10.1111/j.1365-2672.2004.02394.x
    • Demuyter, C., Lollier, M., Legras, J.-L. & Le Jeune, C. Predominance of Saccharomyces uvarum during spontaneous alcoholic fermentation for three consecutive years in an Alsatian winery. J. Appl. Microbiol. 97, 1140-1148 (2004). (Pubitemid 39573937)
    • (2004) Journal of Applied Microbiology , vol.97 , Issue.6 , pp. 1140-1148
    • Demuyter, C.1    Lollier, M.2    Legras, J.-L.3    Le Jeune, C.4
  • 29
    • 33746718727 scopus 로고    scopus 로고
    • Yeast species associated with the spontaneous fermentation of cider
    • DOI 10.1016/j.fm.2006.04.001, PII S0740002006000888
    • Valles, B. S., Bedriñana, R. P., Tascón, N. F., Querol, A. & Madrera, R. Yeast species associated with spontaneous fermentation of cider. Food Microbiol. 24, 25-31 (2007). (Pubitemid 44163779)
    • (2007) Food Microbiology , vol.24 , Issue.1 , pp. 25-31
    • Valles, B.S.1    Bedrinana, R.P.2    Tascon, N.F.3    Simon, A.Q.4    Madrera, R.R.5
  • 30
    • 33750437730 scopus 로고    scopus 로고
    • Sequence diversity, reproductive isolation and species concepts in saccharomyces
    • DOI 10.1534/genetics.106.062166
    • Liti, G., Barton, D. B. & Louis, E. J. Sequence diversity, reproductive isolation and species concepts in Saccharomyces. Genetics 174, 839-850 (2006). (Pubitemid 44656472)
    • (2006) Genetics , vol.174 , Issue.2 , pp. 839-850
    • Liti, G.1    Barton, D.B.H.2    Louis, E.J.3
  • 31
    • 50849102293 scopus 로고    scopus 로고
    • A catalog of neutral and deleterious polymorphism in yeast
    • Doniger, S. W. et al. A catalog of neutral and deleterious polymorphism in yeast. PLoS Genet. 4, e1000183 (2008).
    • (2008) PLoS Genet , vol.4 , pp. 1000183
    • Doniger, S.W.1
  • 32
    • 58149339807 scopus 로고    scopus 로고
    • A multispecies-based taxonomic microarray reveals interspecies hybridization and introgression in Saccharomyces cerevisiae
    • Muller, L. A. & McCusker, J. H. A multispecies-based taxonomic microarray reveals interspecies hybridization and introgression in Saccharomyces cerevisiae. FEMS Yeast Res. 9, 143-152 (2009).
    • (2009) FEMS Yeast Res , vol.9 , pp. 143-152
    • Muller, L.A.1    McCusker, J.H.2
  • 33
    • 77950863293 scopus 로고    scopus 로고
    • Remarkably ancient balanced polymorphisms in a multi-locus gene network
    • Hittinger, C. T. et al. Remarkably ancient balanced polymorphisms in a multi-locus gene network. Nature 464, 54-58 (2010).
    • (2010) Nature , vol.464 , pp. 54-58
    • Hittinger, C.T.1
  • 34
    • 70349515584 scopus 로고    scopus 로고
    • Eukaryote-to-eukaryote gene transfer events revealed by the genome sequence of the wine yeast Saccharomyces cerevisiae EC1118
    • Novo, M. et al. Eukaryote-to-eukaryote gene transfer events revealed by the genome sequence of the wine yeast Saccharomyces cerevisiae EC1118. Proc. Natl Acad. Sci. USA 106, 16333-16338 (2009).
    • (2009) Proc. Natl Acad. Sci. USA , vol.106 , pp. 16333-16338
    • Novo, M.1
  • 35
    • 84867627006 scopus 로고    scopus 로고
    • The ASP3 locus in Saccharomyces cerevisiae originated by horizontal gene transfer from Wickerhamomyces
    • League, G. P., Slot, J. C. & Rokas, A. The ASP3 locus in Saccharomyces cerevisiae originated by horizontal gene transfer from Wickerhamomyces. FEMS Yeast Res. 12, 859-863 (2012).
    • (2012) FEMS Yeast Res. , vol.12 , pp. 859-863
    • League, G.P.1    Slot, J.C.2    Rokas, A.3
  • 36
    • 0036796474 scopus 로고    scopus 로고
    • Molecular characterization of a chromosomal rearrangement involved in the adaptie evolution of yeast strains
    • DOI 10.1101/gr.436602
    • Pérez-Ortín, J. E., Querol, A., Puig, S. & Barrio, E. Molecular characterization of a chromosomal rearrangement involved in the adaptive evolution of yeast strains. Genome Res. 10, 1533-1539 (2002). (Pubitemid 35175091)
    • (2002) Genome Research , vol.12 , Issue.10 , pp. 1533-1539
    • Perez-Ortin, J.E.1    Querol, A.2    Puig, S.3    Barrio, E.4
  • 37
  • 38
    • 84864029159 scopus 로고    scopus 로고
    • Divergence of the yeast transcription factor FZF1 affects sulfite resistance
    • Engle, E. K. & Fay, J. C. Divergence of the yeast transcription factor FZF1 affects sulfite resistance. PLoS Genet. 8, e1002763 (2012).
    • (2012) PLoS Genet. , vol.8
    • Engle, E.K.1    Fay, J.C.2
  • 39
    • 84883233414 scopus 로고    scopus 로고
    • ZRT1 harbors an excess of nonsynonymous polymorphism and shows evidence of balancing selection in Saccharomyces cerevisiae
    • Engle, E. K. & Fay, J. C. ZRT1 harbors an excess of nonsynonymous polymorphism and shows evidence of balancing selection in Saccharomyces cerevisiae. G3 (Bethesda) 3, 665-673 (2013).
    • (2013) G3 (Bethesda) , vol.3 , pp. 665-673
    • Engle, E.K.1    Fay, J.C.2
  • 40
    • 79959847334 scopus 로고    scopus 로고
    • Trait variation in yeast is defined by population history
    • Warringer, J. et al. Trait variation in yeast is defined by population history. PLoS Genet. 7, e1002111 (2011).
    • (2011) PLoS Genet. , vol.7
    • Warringer, J.1
  • 41
    • 84900305093 scopus 로고    scopus 로고
    • QTL Dissection of lag phase in wine fermentation reveals a new translocation responsible for Saccharomyces cerevisiae adaptation to sulphite
    • Zimmer, A. et al. QTL Dissection of lag phase in wine fermentation reveals a new translocation responsible for Saccharomyces cerevisiae adaptation to sulphite. Plos ONE 9, e86298 (2014).
    • (2014) Plos ONE , vol.9
    • Zimmer, A.1
  • 42
    • 33645096818 scopus 로고    scopus 로고
    • Evidence for domesticated and wild populations of Saccharomyces cerevisiae
    • Fay, J. C. & Benavides, J. A. Evidence for domesticated and wild populations of Saccharomyces cerevisiae. PLoS Genet. 1, e5 (2005).
    • (2005) PLoS Genet. , vol.1
    • Fay, J.C.1    Benavides, J.A.2
  • 43
    • 34248192358 scopus 로고    scopus 로고
    • Bread, beer and wine: Saccharomyces cerevisiae diversity reflects human history
    • DOI 10.1111/j.1365-294X.2007.03266.x
    • Legras, J.-L., Merdinoglu, D., Cornuet, J. & Karst, F. Bread, beer and wine: Saccharomyces cerevisiae diversity reflects human history. Mol. Ecol. 16, 2091-2102 (2007). (Pubitemid 46718913)
    • (2007) Molecular Ecology , vol.16 , Issue.10 , pp. 2091-2102
    • Legras, J.-L.1    Merdinoglu, D.2    Cornuet, J.-M.3    Karst, F.4
  • 44
    • 33845618112 scopus 로고    scopus 로고
    • The Molecular Genetics of Crop Domestication
    • DOI 10.1016/j.cell.2006.12.006, PII S0092867406015923
    • Doebley, J. F., Gaut, B. S. & Smith, B. D. The molecular genetics of crop domestication. Cell 127, 1309-1321 (2006). (Pubitemid 44960415)
    • (2006) Cell , vol.127 , Issue.7 , pp. 1309-1321
    • Doebley, J.F.1    Gaut, B.S.2    Smith, B.D.3
  • 45
    • 0028977347 scopus 로고
    • Neogene paleoenvironmental and paleoclimatic change in southern temperate ecosystems-a southern perspective
    • Markgraf, V., McGlone, M. & Hope, G. Neogene paleoenvironmental and paleoclimatic change in southern temperate ecosystems-a southern perspective. Trends Ecol. Evol. 10, 143-147 (1995).
    • (1995) Trends Ecol. Evol. , vol.10 , pp. 143-147
    • Markgraf, V.1    McGlone, M.2    Hope, G.3
  • 46
    • 84898544689 scopus 로고    scopus 로고
    • Population structure and reticulate evolution of Saccharomyces eubayanus and its lager-brewing hybrids
    • Peris, D. et al. Population structure and reticulate evolution of Saccharomyces eubayanus and its lager-brewing hybrids. Mol. Ecol. 23, 2031-2045 (2014).
    • (2014) Mol. Ecol. , vol.23 , pp. 2031-2045
    • Peris, D.1
  • 48
    • 73949121827 scopus 로고    scopus 로고
    • Out in the cold: Genetic variation of Nothofagus pumilio (Nothofagaceae) provides evidence for latitudinally distinct evolutionary histories in austral South America
    • Mathiasen, P. & Premoli, A. C. Out in the cold: genetic variation of Nothofagus pumilio (Nothofagaceae) provides evidence for latitudinally distinct evolutionary histories in austral South America. Mol. Ecol. 19, 371-385 (2010).
    • (2010) Mol. Ecol. , vol.19 , pp. 371-385
    • Mathiasen, P.1    Premoli, A.C.2
  • 49
    • 0027036871 scopus 로고
    • Nothofagus: Evolution from a southern perspective
    • Hill, R. S. Nothofagus: Evolution from a southern perspective. Trends Ecol. Evol. 7, 190-194 (1992). (Pubitemid 23397196)
    • (1992) Trends in Ecology & Evolution , vol.7 , Issue.6 , pp. 190-194
    • Hill, R.S.1
  • 50
    • 84883006832 scopus 로고    scopus 로고
    • The awesome power of yeast evolutionary genetics: New genome sequences and strain resources for the Saccharomyces sensu stricto genus
    • Scannell, D. R. et al. The awesome power of yeast evolutionary genetics: New genome sequences and strain resources for the Saccharomyces sensu stricto genus. G3 (Bethesda) 1, 11-25 (2011).
    • (2011) G3 (Bethesda) , vol.1 , pp. 11-25
    • Scannell, D.R.1
  • 51
    • 68549104404 scopus 로고    scopus 로고
    • The Sequence alignment/map (SAM) format and SAMtools
    • Li, H. et al. The Sequence alignment/map (SAM) format and SAMtools. Bioinformatics 25, 2078-2079 (2009).
    • (2009) Bioinformatics , vol.25 , pp. 2078-2079
    • Li, H.1
  • 52
    • 79957613599 scopus 로고    scopus 로고
    • MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
    • Tamura, K. et al. MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol. Biol. Evol. 28, 2731-2739 (2011).
    • (2011) Mol. Biol. Evol. , vol.28 , pp. 2731-2739
    • Tamura, K.1
  • 53
    • 33750403801 scopus 로고    scopus 로고
    • RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
    • DOI 10.1093/bioinformatics/btl446
    • Stamatakis, A. RAxML-VI-HPC: Maximum Likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22, 2688-2690 (2006). (Pubitemid 44642609)
    • (2006) Bioinformatics , vol.22 , Issue.21 , pp. 2688-2690
    • Stamatakis, A.1
  • 54
    • 0041817568 scopus 로고    scopus 로고
    • Inference of population structure using multilocus genotype data: Linked loci and correlated allele frequencies
    • Falush, D., Stephens, M. & Pritchard, J. K. Inference of population structure: Extensions to linked loci and correlated allele frequencies. Genetics 164, 1567-1587 (2003). (Pubitemid 37102217)
    • (2003) Genetics , vol.164 , Issue.4 , pp. 1567-1587
    • Falush, D.1    Stephens, M.2    Pritchard, J.K.3
  • 55
    • 21244479740 scopus 로고    scopus 로고
    • Detecting the number of clusters of individuals using the software STRUCTURE: A simulation study
    • DOI 10.1111/j.1365-294X.2005.02553.x
    • Evanno, G., Regnaut, S. & Goudet, J. Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study. Mol. Ecol. 14, 2611-2620 (2005). (Pubitemid 40886055)
    • (2005) Molecular Ecology , vol.14 , Issue.8 , pp. 2611-2620
    • Evanno, G.1    Regnaut, S.2    Goudet, J.3
  • 56
    • 34547861256 scopus 로고    scopus 로고
    • CLUMPP: A cluster matching and permutation program for dealing with label switching and multimodality in analysis of population structure
    • DOI 10.1093/bioinformatics/btm233
    • Jakobsson, M. & Rosenberg, N. A. CLUMPP: a cluster matching and permutation program for dealing with label switching and multimodality in analysis of population structure. Bioinformatics 23, 1801-1806 (2007). (Pubitemid 47250313)
    • (2007) Bioinformatics , vol.23 , Issue.14 , pp. 1801-1806
    • Jakobsson, M.1    Rosenberg, N.A.2
  • 57
    • 33749156386 scopus 로고    scopus 로고
    • Genome-wide DNA polymorphism analyses using VariScan
    • Hutter, S., Vilella, A. J. & Rozas, J. Genome-wide DNA polymorphism analyses using VariScan. BMC Bioinformatics 7, 409 (2006).
    • (2006) BMC Bioinformatics , vol.7 , pp. 409
    • Hutter, S.1    Vilella, A.J.2    Rozas, J.3
  • 58
    • 0036184745 scopus 로고    scopus 로고
    • Generating samples under a Wright-Fisher neutral model of genetic variation
    • Hudson, R. R. Generating samples under a Wright-Fisher neutral model of genetic variation. Bioinformatics 18, 337-338 (2002). (Pubitemid 34183119)
    • (2002) Bioinformatics , vol.18 , Issue.2 , pp. 337-338
    • Hudson, R.R.1
  • 59
    • 0344464730 scopus 로고    scopus 로고
    • Libsequence: A C++ class library for evolutionary genetic analysis
    • DOI 10.1093/bioinformatics/btg316
    • Thornton, K. Libsequence: a C class library for evolutionary genetic analysis. Bioinformatics 19, 2325-2327 (2003). (Pubitemid 37483994)
    • (2003) Bioinformatics , vol.19 , Issue.17 , pp. 2325-2327
    • Thornton, K.1
  • 60
    • 0022211482 scopus 로고
    • Statistical properties of the number of recombination events in the history of a sample of DNA sequences
    • Hudson, R. R. & Kaplan, N. L. Statistical properties of the number of recombination events in the history of a sample of DNA sequences. Genetics 111, 147-164 (1985). (Pubitemid 16248827)
    • (1985) Genetics , vol.111 , Issue.1 , pp. 147-164
    • Hudson, R.R.1    Kaplan, N.L.2
  • 61
    • 84864530626 scopus 로고    scopus 로고
    • Bayesian phylogenetics with BEAUti and the BEAST 1. 7
    • Drummond, A. J., Suchard, M. A., Xie, D. & Rambaut, A. Bayesian phylogenetics with BEAUti and the BEAST 1. 7. Mol. Biol. Evol. 29, 1969-1973 (2012).
    • (2012) Mol. Biol. Evol. , vol.29 , pp. 1969-1973
    • Drummond, A.J.1    Suchard, M.A.2    Xie, D.3    Rambaut, A.4
  • 62
    • 84881546150 scopus 로고    scopus 로고
    • Primers for fourteen protein-coding genes and the deep phylogeny of the true yeasts
    • Koufopanou, V., Swire, J., Lomas, S. & Burt, A. Primers for fourteen protein-coding genes and the deep phylogeny of the true yeasts. FEMS Yeast Res. 13, 574-584 (2013).
    • (2013) FEMS Yeast Res. , vol.13 , pp. 574-584
    • Koufopanou, V.1    Swire, J.2    Lomas, S.3    Burt, A.4
  • 63
    • 84873036642 scopus 로고    scopus 로고
    • High quality de novo sequencing and assembly of the Saccharomyces arboricolus genome
    • Liti, G. et al. High quality de novo sequencing and assembly of the Saccharomyces arboricolus genome. BMC Genomics 31, 69 (2013).
    • (2013) BMC Genomics , vol.31 , pp. 69
    • Liti, G.1
  • 64
    • 67049158348 scopus 로고    scopus 로고
    • Fast statistical alignment
    • Bradley, R. K. et al. Fast statistical alignment. PLoS Comput. Biol. 5, e1000392 (2009).
    • (2009) PLoS Comput. Biol. , vol.5
    • Bradley, R.K.1
  • 65
    • 0242578620 scopus 로고    scopus 로고
    • A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood
    • DOI 10.1080/10635150390235520
    • Guindon, S. & Gascuel, O. PhyML: A simple, fast and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst. Biol. 52, 696-704 (2003). (Pubitemid 37365050)
    • (2003) Systematic Biology , vol.52 , Issue.5 , pp. 696-704
    • Guindon, S.1    Gascuel, O.2
  • 66
    • 67649884743 scopus 로고    scopus 로고
    • Fast and accurate short read alignment with Burrows-Wheeler transform
    • Li, H. & Durbin, R. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25, 1754-1760 (2009).
    • (2009) Bioinformatics , vol.25 , pp. 1754-1760
    • Li, H.1    Durbin, R.2
  • 67
    • 43149115851 scopus 로고    scopus 로고
    • Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
    • DOI 10.1101/gr.074492.107
    • Zerbino, D. R. & Birney, E. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res. 18, 821-829 (2008). (Pubitemid 351645072)
    • (2008) Genome Research , vol.18 , Issue.5 , pp. 821-829
    • Zerbino, D.R.1    Birney, E.2
  • 68
    • 12344269924 scopus 로고    scopus 로고
    • GO::TermFinder - Open source software for accessing Gene Ontology information and finding significantly enriched Gene Ontology terms associated with a list of genes
    • DOI 10.1093/bioinformatics/bth456
    • Boyle, E. I. et al. GO::TermFinder-open source software for accessing Gene Ontology information and finding significantly enriched Gene Ontology terms associated with a list of genes. Bioinformatics 20, 3710-3715 (2004). (Pubitemid 40136825)
    • (2004) Bioinformatics , vol.20 , Issue.18 , pp. 3710-3715
    • Boyle, E.I.1    Weng, S.2    Gollub, J.3    Jin, H.4    Botstein, D.5    Cherry, J.M.6    Sherlock, G.7
  • 69
    • 84860591356 scopus 로고    scopus 로고
    • Analysis of the Saccharomyces cerevisiae pan-genome reveals a pool of copy number variants distributed in diverse yeast strains from differing industrial environments
    • Dunn, B., Richter, C., Kvitek, D. J., Pugh, T. & Sherlock, G. Analysis of the Saccharomyces cerevisiae pan-genome reveals a pool of copy number variants distributed in diverse yeast strains from differing industrial environments. Genome Res. 22, 908-924 (2012).
    • (2012) Genome Res. , vol.22 , pp. 908-924
    • Dunn, B.1    Richter, C.2    Kvitek, D.J.3    Pugh, T.4    Sherlock, G.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.