-
1
-
-
0346750650
-
Evidence for S cerevisiae Fermentation in Ancient Wine
-
DOI 10.1007/s00239-003-0031-2
-
Cavalieri, D., McGovern, P. E., Hartl, D. L., Mortimer, R. & Polsineli, M. Evidence for S. cerevisiae fermentation in ancient wine. J. Mol. Evol. 57(Suppl 1): S226-S232 (2003). (Pubitemid 37544011)
-
(2003)
Journal of Molecular Evolution
, vol.57
, Issue.SUPPL. 1
-
-
Cavalieri, D.1
McGovern, P.E.2
Hartl, D.L.3
Mortimer, R.4
Polsinelli, M.5
-
2
-
-
19944403184
-
Fermented beverages of pre- and proto-historic China
-
DOI 10.1073/pnas.0407921102
-
McGovern, P. E. et al. Fermented beverages of pre-and proto-historic China. Proc. Natl Acad. Sci. USA 101, 17593-17598 (2004). (Pubitemid 40051931)
-
(2004)
Proceedings of the National Academy of Sciences of the United States of America
, vol.101
, Issue.51
, pp. 17593-17598
-
-
McGovern, P.E.1
Zhang, J.2
Tang, J.3
Zhang, Z.4
Hall, G.R.5
Moreau, R.A.6
Nunez, A.7
Butrym, E.D.8
Richards, M.P.9
Wang, C.-S.10
Cheng, G.11
Zhao, Z.12
Wang, C.13
-
3
-
-
84876783002
-
Saccharomyces diversity and evolution: A budding model genus
-
Hittinger, C. T. Saccharomyces diversity and evolution: a budding model genus. Trends Genet. 29, 309-317 (2013).
-
(2013)
Trends Genet.
, vol.29
, pp. 309-317
-
-
Hittinger, C.T.1
-
4
-
-
42049085470
-
Natural populations of Saccharomyces kudriavzevii in Portugal are associated with Oak bark and are sympatric with S. Cerevisiae and S. Paradoxus
-
DOI 10.1128/AEM.02396-07
-
Sampaio, J. P. & Gonçalves, P. Natural populations of Saccharomyces kudriavzevii in Portugal are associated with oak bark and are sympatric with S. cerevisiae and S. paradoxus. Appl. Environ. Microbiol. 74, 2144-2152 (2008). (Pubitemid 351522069)
-
(2008)
Applied and Environmental Microbiology
, vol.74
, Issue.7
, pp. 2144-2152
-
-
Sampaio, J.P.1
Goncalves, P.2
-
5
-
-
84868206362
-
Surprisingly diverged populations of Saccharomyces cerevisiae in natural environments remote from human activity
-
Wang, Q. M., Liu,W. Q., Liti, G., Wang, S. A. & Bai, F. Y. Surprisingly diverged populations of Saccharomyces cerevisiae in natural environments remote from human activity. Mol. Ecol. 21, 5404-5417 (2012).
-
(2012)
Mol. Ecol.
, vol.21
, pp. 5404-5417
-
-
Wang, Q.M.1
Liu, W.Q.2
Liti, G.3
Wang, S.A.4
Bai, F.Y.5
-
6
-
-
62649089109
-
Population genomics of domestic and wild yeasts
-
Liti, G. et al. Population genomics of domestic and wild yeasts. Nature 458, 337-341 (2009).
-
(2009)
Nature
, vol.458
, pp. 337-341
-
-
Liti, G.1
-
7
-
-
84890831000
-
Genomic sequence diversity and population structure of Saccharomyces cerevisiae Assessed by RAD-seq
-
Cromie, G. A. et al. Genomic sequence diversity and population structure of Saccharomyces cerevisiae Assessed by RAD-seq. G3 (Bethesda) 3, 2163-2171 (2013).
-
(2013)
G3 (Bethesda)
, vol.3
, pp. 2163-2171
-
-
Cromie, G.A.1
-
8
-
-
62649126517
-
Comprehensive polymorphism survey elucidates population structure of Saccharomyces cerevisiae
-
Schacherer, J., Shapiro, J., Ruderfer, D. M. & Kruglyak, L. Comprehensive polymorphism survey elucidates population structure of Saccharomyces cerevisiae. Nature 458, 342-345 (2009).
-
(2009)
Nature
, vol.458
, pp. 342-345
-
-
Schacherer, J.1
Shapiro, J.2
Ruderfer, D.M.3
Kruglyak, L.4
-
9
-
-
84897883016
-
A high-definition view of functional genetic variation from natural yeast genomes
-
Bergström, A. et al. A high-definition view of functional genetic variation from natural yeast genomes. Mol. Biol. Evol. 31, 872-888 (2014).
-
(2014)
Mol Biol. Evol.
, vol.31
, pp. 872-888
-
-
Bergström, A.1
-
10
-
-
84878462125
-
Mixing of vineyard and oak-tree ecotypes of Saccharomyces cerevisiae in North American vineyards
-
Hyma, K. E. & Fay, J. C. Mixing of vineyard and oak-tree ecotypes of Saccharomyces cerevisiae in North American vineyards. Mol. Ecol. 22, 2917-2930 (2013).
-
(2013)
Mol. Ecol.
, vol.22
, pp. 2917-2930
-
-
Hyma, K.E.1
Fay, J.C.2
-
11
-
-
53549098548
-
Reconstruction of the genome origins and evolution of the hybrid lager yeast Saccharomyces pastorianus
-
Dunn, B. & Sherlock, G. Reconstruction of the genome origins and evolution of the hybrid lager yeast Saccharomyces pastorianus. Genome Res. 18, 1610-1623 (2008).
-
(2008)
Genome Res.
, vol.18
, pp. 1610-1623
-
-
Dunn, B.1
Sherlock, G.2
-
12
-
-
80052293238
-
Microbe domestication and the identification of the wild genetic stock of lager-brewing yeast
-
Libkind, D. et al. Microbe domestication and the identification of the wild genetic stock of lager-brewing yeast. Proc. Natl Acad. Sci. USA 108, 14539-14544 (2011).
-
(2011)
Proc. Natl Acad. Sci. USA
, vol.108
, pp. 14539-14544
-
-
Libkind, D.1
-
13
-
-
33751260855
-
Natural hybrids from Saccharomyces cerevisiae, Saccharomyces bayanus and Saccharomyces kudriavzevii in wine fermentations
-
DOI 10.1111/j.1567-1364.2006.00126.x
-
González, S. S., Barrio, E., Gafner, J. & Querol, A. Natural hybrids from Saccharomyces cerevisiae, Saccharomyces bayanus and Saccharomyces kudriavzevii in wine fermentations. FEMS Yeast Res. 6, 1221-1234 (2006). (Pubitemid 44800319)
-
(2006)
FEMS Yeast Research
, vol.6
, Issue.8
, pp. 1221-1234
-
-
Gonzalez, S.S.1
Barrio, E.2
Gafner, J.3
Querol, A.4
-
14
-
-
34547897386
-
Genetically different wine yeasts isolated from Austrian vine-growing regions influence wine aroma differently and contain putative hybrids between Saccharomyces cerevisiae and Saccharomyces kudriavzevii
-
DOI 10.1111/j.1567-1364.2007.00240.x
-
Lopandic, K. et al. Genetically different wine yeasts isolated from Austrian vine-growing regions influence wine aroma differently and contain putative hybrids between Saccharomyces cerevisiae and Saccharomyces kudriavzevii. FEMS Yeast Res. 7, 953-965 (2007). (Pubitemid 47256355)
-
(2007)
FEMS Yeast Research
, vol.7
, Issue.6
, pp. 953-965
-
-
Lopandic, K.1
Gangl, H.2
Wallner, E.3
Tscheik, G.4
Leitner, G.5
Querol, A.6
Borth, N.7
Breitenbach, M.8
Prillinger, H.9
Tiefenbrunner, W.10
-
15
-
-
42349105178
-
Molecular characterization of new natural hybrids of Saccharomyces cerevisiae and S. Kudriavzevii in brewing
-
DOI 10.1128/AEM.01867-07
-
González, S. S., Barrio, E. & Querol, A. Molecular characterization of new natural hybrids of Saccharomyces cerevisiae and S. kudriavzevii in brewing. Appl. Environ. Microbiol. 74, 2314-2320 (2008). (Pubitemid 351555441)
-
(2008)
Applied and Environmental Microbiology
, vol.74
, Issue.8
, pp. 2314-2320
-
-
Gonzalez, S.S.1
Barrio, E.2
Querol, A.3
-
16
-
-
0006004427
-
Identification and enological characteristics of cryophilic wine yeasts
-
Kishimoto, M., Shinohara, T., Soma, E. & Goto, S. Identification and enological characteristics of cryophilic wine yeasts. J. Brew. Soc. Jpn 88, 708-713 (1993).
-
(1993)
J. Brew. Soc. Jpn
, vol.88
, pp. 708-713
-
-
Kishimoto, M.1
Shinohara, T.2
Soma, E.3
Goto, S.4
-
17
-
-
0029140199
-
Improvement of wine composition with cryotolerant Saccharomyces strains
-
Giudici, P., Zambonelli, C., Passarelli, P. & Castellari, L. Improvement of wine composition with cryotolerant Saccharomyces strains. Am. J. Enol. Vitic. 46, 143-147 (1995).
-
(1995)
Am. J. Enol. Vitic.
, vol.46
, pp. 143-147
-
-
Giudici, P.1
Zambonelli, C.2
Passarelli, P.3
Castellari, L.4
-
18
-
-
0029862587
-
Higher alcohol production by cryotolerant Saccharomyces strains
-
Bertolini, L., Zambonelli, C., Giudici, P. & Castellari, L. Higher alcohol production by cryotolerant Saccharomyces strains. Am. J. Enol. Vitic. 47, 343-345 (1996). (Pubitemid 26369453)
-
(1996)
American Journal of Enology and Viticulture
, vol.47
, Issue.3
, pp. 343-345
-
-
Bertolini, L.1
Zambonelli, C.2
Giudici, P.3
Castellari, L.4
-
19
-
-
77949915405
-
Reassessment of phenotypic traits for Saccharomyces bayanus var uvarum wine yeast strains
-
Masneuf-Pomarède, I., Bely, M., Marullo, P., Lonvaud-Funel, A. & Dubourdieu, D. Reassessment of phenotypic traits for Saccharomyces bayanus var. uvarum wine yeast strains. Int. J. Food Microbiol. 139, 79-86 (2010).
-
(2010)
Int. J. Food Microbiol.
, vol.139
, pp. 79-86
-
-
Masneuf-Pomarède, I.1
Bely, M.2
Marullo, P.3
Lonvaud-Funel, A.4
Dubourdieu, D.5
-
20
-
-
0347069825
-
Hybrids saccharomyces cerevisiae x Saccharomyces bayanus var uvarum having a high liberating ability of some sulfur varietal aromas of vitis vinifera sauvignon blanc wines
-
Masneuf, I., Murat, M. L., Naumov, G. I., Tominaga, T. & Dubourdieu, D. Hybrids Saccharomyces cerevisiae X Saccharomyces bayanus var. uvarum having a high liberating ability of some sulfur varietal aroms of Vitis vinifera Sauvignon blanc wines. J. Int. Sci. Vigne Vin. 36, 205-212 (2002). (Pubitemid 135712138)
-
(2002)
Journal International des Sciences de la Vigne et du Vin
, vol.36
, Issue.4
, pp. 205-212
-
-
Masneuf, I.1
Murat, M.-L.2
Naumov, G.I.3
Tominaga, T.4
Dubourdieu, D.5
-
21
-
-
84877734723
-
Yeast proteome variations reveal different adaptive responses to grape must fermentation
-
Blein-Nicolas, M. et al. Yeast proteome variations reveal different adaptive responses to grape must fermentation. Mol. Biol. Evol. 30, 1368-1383 (2013).
-
(2013)
Mol. Biol. Evol.
, vol.30
, pp. 1368-1383
-
-
Blein-Nicolas, M.1
-
22
-
-
0032790188
-
Genetic and phenotypic diversity of Saccharomyces sensu stricto strains isolated from Amarone wine
-
DOI 10.1023/A:1001773916407
-
Torriani, S., Zapparoli, G. & Suzzi, G. Genetic and phenotypic diversity of Saccharomyces sensu stricto strains isolated from Amarone wine. Antonie Van Leeuwenhoek 75, 207-215 (1999). (Pubitemid 29324752)
-
(1999)
Antonie van Leeuwenhoek, International Journal of General and Molecular Microbiology
, vol.75
, Issue.3
, pp. 207-215
-
-
Torriani, S.1
Zapparoli, G.2
Suzzi, G.3
-
23
-
-
0033780212
-
Association of Saccharomyces bayanus var uvarum with some French wines: Genetic analysis of yeast population
-
Naumov, G. I., Masneuf, I., Naumova, E. S., Aigle, M. & Dubourdieu, D. Association of Saccharomyces bayanus var. uvarum with some French wines: genetic analysis of yeast population. Res. Microbiol. 151, 683-691 (2000).
-
(2000)
Res. Microbiol.
, vol.151
, pp. 683-691
-
-
Naumov, G.I.1
Masneuf, I.2
Naumova, E.S.3
Aigle, M.4
Dubourdieu, D.5
-
24
-
-
0035040369
-
Analysis of yeasts derived from natural fermentation in a Tokaj winery
-
DOI 10.1023/A:1010249408975
-
Sipiczki, M., Romano, P., Lipani, G., Miklos, I. & Antunovics, Z. Analysis of yeasts derived from natural fermentation in a Tokaj winery. Antonie Van Leeuwenhoek 79, 97-105 (2001). (Pubitemid 32396635)
-
(2001)
Antonie van Leeuwenhoek, International Journal of General and Molecular Microbiology
, vol.79
, Issue.1
, pp. 97-105
-
-
Sipiczki, M.1
Romano, P.2
Lipani, G.3
Miklos, I.4
Antunovics, Z.5
-
25
-
-
0042845702
-
Yeast associated with spontaneous fermentations of white wines from the "Txakoli de Bizkaia" region (Basque Country, North Spain)
-
DOI 10.1016/S0168-1605(03)00289-7
-
Rementeria, A. et al. Yeasts associated with spontaneous fermentations of white wines from the 'Txakoli de Bizkaia' region (Basque Country, North Spain). Int. J. Food. Microbiol. 86, 201-207 (2003). (Pubitemid 36900419)
-
(2003)
International Journal of Food Microbiology
, vol.86
, Issue.1-2
, pp. 201-207
-
-
Rementeria, A.1
Rodriguez, J.A.2
Cadaval, A.3
Amenabar, R.4
Muguruza, J.R.5
Hernando, F.L.6
Sevilla, M.J.7
-
26
-
-
9644283045
-
Predominance of Saccharomyces uvarum during spontaneous alcoholic fermentation, for three consecutive years, in an Alsatian winery
-
DOI 10.1111/j.1365-2672.2004.02394.x
-
Demuyter, C., Lollier, M., Legras, J.-L. & Le Jeune, C. Predominance of Saccharomyces uvarum during spontaneous alcoholic fermentation for three consecutive years in an Alsatian winery. J. Appl. Microbiol. 97, 1140-1148 (2004). (Pubitemid 39573937)
-
(2004)
Journal of Applied Microbiology
, vol.97
, Issue.6
, pp. 1140-1148
-
-
Demuyter, C.1
Lollier, M.2
Legras, J.-L.3
Le Jeune, C.4
-
27
-
-
0036383469
-
Saccharomyces bayanus var uvarum in Tokaj wine-making of Slovakia and Hungary
-
Naumov, G. I., Naumova, E. S., Antunovics, A. & Sipiczki, M. Saccharomyces bayanus var. uvarum in Tokaj wine-making of Slovakia and Hungary. Appl. Microbiol. Biotechnol. 59, 727-730 (2002).
-
(2002)
Appl. Microbiol. Biotechnol.
, vol.59
, pp. 727-730
-
-
Naumov, G.I.1
Naumova, E.S.2
Antunovics, A.3
Sipiczki, M.4
-
28
-
-
0035837491
-
Genetic identification of Saccharomyces bayanus var uvarum, a cider-fermenting yeast
-
DOI 10.1016/S0168-1605(00)00515-8, PII S0168160500005158
-
Naumov, G. I. et al. Genetic identification of Saccharomyces bayanus var. uvarum, a cider-fermenting yeast. Int. J. Food. Microbiol. 65, 163-171 (2001). (Pubitemid 32396858)
-
(2001)
International Journal of Food Microbiology
, vol.65
, Issue.3
, pp. 163-171
-
-
Naumov, G.I.1
Nguyen, H.-V.2
Naumova, E.S.3
Michel, A.4
Aigle, M.5
Gaillardin, C.6
-
29
-
-
33746718727
-
Yeast species associated with the spontaneous fermentation of cider
-
DOI 10.1016/j.fm.2006.04.001, PII S0740002006000888
-
Valles, B. S., Bedriñana, R. P., Tascón, N. F., Querol, A. & Madrera, R. Yeast species associated with spontaneous fermentation of cider. Food Microbiol. 24, 25-31 (2007). (Pubitemid 44163779)
-
(2007)
Food Microbiology
, vol.24
, Issue.1
, pp. 25-31
-
-
Valles, B.S.1
Bedrinana, R.P.2
Tascon, N.F.3
Simon, A.Q.4
Madrera, R.R.5
-
30
-
-
33750437730
-
Sequence diversity, reproductive isolation and species concepts in saccharomyces
-
DOI 10.1534/genetics.106.062166
-
Liti, G., Barton, D. B. & Louis, E. J. Sequence diversity, reproductive isolation and species concepts in Saccharomyces. Genetics 174, 839-850 (2006). (Pubitemid 44656472)
-
(2006)
Genetics
, vol.174
, Issue.2
, pp. 839-850
-
-
Liti, G.1
Barton, D.B.H.2
Louis, E.J.3
-
31
-
-
50849102293
-
A catalog of neutral and deleterious polymorphism in yeast
-
Doniger, S. W. et al. A catalog of neutral and deleterious polymorphism in yeast. PLoS Genet. 4, e1000183 (2008).
-
(2008)
PLoS Genet
, vol.4
, pp. 1000183
-
-
Doniger, S.W.1
-
32
-
-
58149339807
-
A multispecies-based taxonomic microarray reveals interspecies hybridization and introgression in Saccharomyces cerevisiae
-
Muller, L. A. & McCusker, J. H. A multispecies-based taxonomic microarray reveals interspecies hybridization and introgression in Saccharomyces cerevisiae. FEMS Yeast Res. 9, 143-152 (2009).
-
(2009)
FEMS Yeast Res
, vol.9
, pp. 143-152
-
-
Muller, L.A.1
McCusker, J.H.2
-
33
-
-
77950863293
-
Remarkably ancient balanced polymorphisms in a multi-locus gene network
-
Hittinger, C. T. et al. Remarkably ancient balanced polymorphisms in a multi-locus gene network. Nature 464, 54-58 (2010).
-
(2010)
Nature
, vol.464
, pp. 54-58
-
-
Hittinger, C.T.1
-
34
-
-
70349515584
-
Eukaryote-to-eukaryote gene transfer events revealed by the genome sequence of the wine yeast Saccharomyces cerevisiae EC1118
-
Novo, M. et al. Eukaryote-to-eukaryote gene transfer events revealed by the genome sequence of the wine yeast Saccharomyces cerevisiae EC1118. Proc. Natl Acad. Sci. USA 106, 16333-16338 (2009).
-
(2009)
Proc. Natl Acad. Sci. USA
, vol.106
, pp. 16333-16338
-
-
Novo, M.1
-
35
-
-
84867627006
-
The ASP3 locus in Saccharomyces cerevisiae originated by horizontal gene transfer from Wickerhamomyces
-
League, G. P., Slot, J. C. & Rokas, A. The ASP3 locus in Saccharomyces cerevisiae originated by horizontal gene transfer from Wickerhamomyces. FEMS Yeast Res. 12, 859-863 (2012).
-
(2012)
FEMS Yeast Res.
, vol.12
, pp. 859-863
-
-
League, G.P.1
Slot, J.C.2
Rokas, A.3
-
36
-
-
0036796474
-
Molecular characterization of a chromosomal rearrangement involved in the adaptie evolution of yeast strains
-
DOI 10.1101/gr.436602
-
Pérez-Ortín, J. E., Querol, A., Puig, S. & Barrio, E. Molecular characterization of a chromosomal rearrangement involved in the adaptive evolution of yeast strains. Genome Res. 10, 1533-1539 (2002). (Pubitemid 35175091)
-
(2002)
Genome Research
, vol.12
, Issue.10
, pp. 1533-1539
-
-
Perez-Ortin, J.E.1
Querol, A.2
Puig, S.3
Barrio, E.4
-
37
-
-
34547906098
-
Single QTL mapping and nucleotide-level resolution of a physiologic trait in wine Saccharomyces cerevisiae strains
-
DOI 10.1111/j.1567-1364.2007.00252.x
-
Marullo, P. et al. Single QTL mapping and nucleotide-level resolution of a physiologic trait in wine Saccharomyces cerevisiae strains. FEMS Yeast Res. 7, 941-952 (2007). (Pubitemid 47256362)
-
(2007)
FEMS Yeast Research
, vol.7
, Issue.6
, pp. 941-952
-
-
Marullo, P.1
Aigle, M.2
Bely, M.3
Masneuf-Pomarede, I.4
Durrens, P.5
Dubourdieu, D.6
Yvert, G.7
-
38
-
-
84864029159
-
Divergence of the yeast transcription factor FZF1 affects sulfite resistance
-
Engle, E. K. & Fay, J. C. Divergence of the yeast transcription factor FZF1 affects sulfite resistance. PLoS Genet. 8, e1002763 (2012).
-
(2012)
PLoS Genet.
, vol.8
-
-
Engle, E.K.1
Fay, J.C.2
-
39
-
-
84883233414
-
ZRT1 harbors an excess of nonsynonymous polymorphism and shows evidence of balancing selection in Saccharomyces cerevisiae
-
Engle, E. K. & Fay, J. C. ZRT1 harbors an excess of nonsynonymous polymorphism and shows evidence of balancing selection in Saccharomyces cerevisiae. G3 (Bethesda) 3, 665-673 (2013).
-
(2013)
G3 (Bethesda)
, vol.3
, pp. 665-673
-
-
Engle, E.K.1
Fay, J.C.2
-
40
-
-
79959847334
-
Trait variation in yeast is defined by population history
-
Warringer, J. et al. Trait variation in yeast is defined by population history. PLoS Genet. 7, e1002111 (2011).
-
(2011)
PLoS Genet.
, vol.7
-
-
Warringer, J.1
-
41
-
-
84900305093
-
QTL Dissection of lag phase in wine fermentation reveals a new translocation responsible for Saccharomyces cerevisiae adaptation to sulphite
-
Zimmer, A. et al. QTL Dissection of lag phase in wine fermentation reveals a new translocation responsible for Saccharomyces cerevisiae adaptation to sulphite. Plos ONE 9, e86298 (2014).
-
(2014)
Plos ONE
, vol.9
-
-
Zimmer, A.1
-
42
-
-
33645096818
-
Evidence for domesticated and wild populations of Saccharomyces cerevisiae
-
Fay, J. C. & Benavides, J. A. Evidence for domesticated and wild populations of Saccharomyces cerevisiae. PLoS Genet. 1, e5 (2005).
-
(2005)
PLoS Genet.
, vol.1
-
-
Fay, J.C.1
Benavides, J.A.2
-
43
-
-
34248192358
-
Bread, beer and wine: Saccharomyces cerevisiae diversity reflects human history
-
DOI 10.1111/j.1365-294X.2007.03266.x
-
Legras, J.-L., Merdinoglu, D., Cornuet, J. & Karst, F. Bread, beer and wine: Saccharomyces cerevisiae diversity reflects human history. Mol. Ecol. 16, 2091-2102 (2007). (Pubitemid 46718913)
-
(2007)
Molecular Ecology
, vol.16
, Issue.10
, pp. 2091-2102
-
-
Legras, J.-L.1
Merdinoglu, D.2
Cornuet, J.-M.3
Karst, F.4
-
44
-
-
33845618112
-
The Molecular Genetics of Crop Domestication
-
DOI 10.1016/j.cell.2006.12.006, PII S0092867406015923
-
Doebley, J. F., Gaut, B. S. & Smith, B. D. The molecular genetics of crop domestication. Cell 127, 1309-1321 (2006). (Pubitemid 44960415)
-
(2006)
Cell
, vol.127
, Issue.7
, pp. 1309-1321
-
-
Doebley, J.F.1
Gaut, B.S.2
Smith, B.D.3
-
45
-
-
0028977347
-
Neogene paleoenvironmental and paleoclimatic change in southern temperate ecosystems-a southern perspective
-
Markgraf, V., McGlone, M. & Hope, G. Neogene paleoenvironmental and paleoclimatic change in southern temperate ecosystems-a southern perspective. Trends Ecol. Evol. 10, 143-147 (1995).
-
(1995)
Trends Ecol. Evol.
, vol.10
, pp. 143-147
-
-
Markgraf, V.1
McGlone, M.2
Hope, G.3
-
46
-
-
84898544689
-
Population structure and reticulate evolution of Saccharomyces eubayanus and its lager-brewing hybrids
-
Peris, D. et al. Population structure and reticulate evolution of Saccharomyces eubayanus and its lager-brewing hybrids. Mol. Ecol. 23, 2031-2045 (2014).
-
(2014)
Mol. Ecol.
, vol.23
, pp. 2031-2045
-
-
Peris, D.1
-
47
-
-
84901941927
-
-
Veblen, T. T., Hill, R. S. & Read, J. Yale University Press
-
Markgraf, V., Romero, E. & Villagrán, C. In The Ecology and Biogeography of Nothofagus Forests. (eds Veblen, T. T., Hill, R. S. & Read, J. ) (Yale University Press, 1996).
-
The Ecology and Biogeography of Nothofagus Forests
, vol.1996
-
-
Markgraf, V.1
Romero, E.2
Villagrán, C.3
-
48
-
-
73949121827
-
Out in the cold: Genetic variation of Nothofagus pumilio (Nothofagaceae) provides evidence for latitudinally distinct evolutionary histories in austral South America
-
Mathiasen, P. & Premoli, A. C. Out in the cold: genetic variation of Nothofagus pumilio (Nothofagaceae) provides evidence for latitudinally distinct evolutionary histories in austral South America. Mol. Ecol. 19, 371-385 (2010).
-
(2010)
Mol. Ecol.
, vol.19
, pp. 371-385
-
-
Mathiasen, P.1
Premoli, A.C.2
-
49
-
-
0027036871
-
Nothofagus: Evolution from a southern perspective
-
Hill, R. S. Nothofagus: Evolution from a southern perspective. Trends Ecol. Evol. 7, 190-194 (1992). (Pubitemid 23397196)
-
(1992)
Trends in Ecology & Evolution
, vol.7
, Issue.6
, pp. 190-194
-
-
Hill, R.S.1
-
50
-
-
84883006832
-
The awesome power of yeast evolutionary genetics: New genome sequences and strain resources for the Saccharomyces sensu stricto genus
-
Scannell, D. R. et al. The awesome power of yeast evolutionary genetics: New genome sequences and strain resources for the Saccharomyces sensu stricto genus. G3 (Bethesda) 1, 11-25 (2011).
-
(2011)
G3 (Bethesda)
, vol.1
, pp. 11-25
-
-
Scannell, D.R.1
-
51
-
-
68549104404
-
The Sequence alignment/map (SAM) format and SAMtools
-
Li, H. et al. The Sequence alignment/map (SAM) format and SAMtools. Bioinformatics 25, 2078-2079 (2009).
-
(2009)
Bioinformatics
, vol.25
, pp. 2078-2079
-
-
Li, H.1
-
52
-
-
79957613599
-
MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
-
Tamura, K. et al. MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol. Biol. Evol. 28, 2731-2739 (2011).
-
(2011)
Mol. Biol. Evol.
, vol.28
, pp. 2731-2739
-
-
Tamura, K.1
-
53
-
-
33750403801
-
RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
-
DOI 10.1093/bioinformatics/btl446
-
Stamatakis, A. RAxML-VI-HPC: Maximum Likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22, 2688-2690 (2006). (Pubitemid 44642609)
-
(2006)
Bioinformatics
, vol.22
, Issue.21
, pp. 2688-2690
-
-
Stamatakis, A.1
-
54
-
-
0041817568
-
Inference of population structure using multilocus genotype data: Linked loci and correlated allele frequencies
-
Falush, D., Stephens, M. & Pritchard, J. K. Inference of population structure: Extensions to linked loci and correlated allele frequencies. Genetics 164, 1567-1587 (2003). (Pubitemid 37102217)
-
(2003)
Genetics
, vol.164
, Issue.4
, pp. 1567-1587
-
-
Falush, D.1
Stephens, M.2
Pritchard, J.K.3
-
55
-
-
21244479740
-
Detecting the number of clusters of individuals using the software STRUCTURE: A simulation study
-
DOI 10.1111/j.1365-294X.2005.02553.x
-
Evanno, G., Regnaut, S. & Goudet, J. Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study. Mol. Ecol. 14, 2611-2620 (2005). (Pubitemid 40886055)
-
(2005)
Molecular Ecology
, vol.14
, Issue.8
, pp. 2611-2620
-
-
Evanno, G.1
Regnaut, S.2
Goudet, J.3
-
56
-
-
34547861256
-
CLUMPP: A cluster matching and permutation program for dealing with label switching and multimodality in analysis of population structure
-
DOI 10.1093/bioinformatics/btm233
-
Jakobsson, M. & Rosenberg, N. A. CLUMPP: a cluster matching and permutation program for dealing with label switching and multimodality in analysis of population structure. Bioinformatics 23, 1801-1806 (2007). (Pubitemid 47250313)
-
(2007)
Bioinformatics
, vol.23
, Issue.14
, pp. 1801-1806
-
-
Jakobsson, M.1
Rosenberg, N.A.2
-
57
-
-
33749156386
-
Genome-wide DNA polymorphism analyses using VariScan
-
Hutter, S., Vilella, A. J. & Rozas, J. Genome-wide DNA polymorphism analyses using VariScan. BMC Bioinformatics 7, 409 (2006).
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 409
-
-
Hutter, S.1
Vilella, A.J.2
Rozas, J.3
-
58
-
-
0036184745
-
Generating samples under a Wright-Fisher neutral model of genetic variation
-
Hudson, R. R. Generating samples under a Wright-Fisher neutral model of genetic variation. Bioinformatics 18, 337-338 (2002). (Pubitemid 34183119)
-
(2002)
Bioinformatics
, vol.18
, Issue.2
, pp. 337-338
-
-
Hudson, R.R.1
-
59
-
-
0344464730
-
Libsequence: A C++ class library for evolutionary genetic analysis
-
DOI 10.1093/bioinformatics/btg316
-
Thornton, K. Libsequence: a C class library for evolutionary genetic analysis. Bioinformatics 19, 2325-2327 (2003). (Pubitemid 37483994)
-
(2003)
Bioinformatics
, vol.19
, Issue.17
, pp. 2325-2327
-
-
Thornton, K.1
-
60
-
-
0022211482
-
Statistical properties of the number of recombination events in the history of a sample of DNA sequences
-
Hudson, R. R. & Kaplan, N. L. Statistical properties of the number of recombination events in the history of a sample of DNA sequences. Genetics 111, 147-164 (1985). (Pubitemid 16248827)
-
(1985)
Genetics
, vol.111
, Issue.1
, pp. 147-164
-
-
Hudson, R.R.1
Kaplan, N.L.2
-
61
-
-
84864530626
-
Bayesian phylogenetics with BEAUti and the BEAST 1. 7
-
Drummond, A. J., Suchard, M. A., Xie, D. & Rambaut, A. Bayesian phylogenetics with BEAUti and the BEAST 1. 7. Mol. Biol. Evol. 29, 1969-1973 (2012).
-
(2012)
Mol. Biol. Evol.
, vol.29
, pp. 1969-1973
-
-
Drummond, A.J.1
Suchard, M.A.2
Xie, D.3
Rambaut, A.4
-
62
-
-
84881546150
-
Primers for fourteen protein-coding genes and the deep phylogeny of the true yeasts
-
Koufopanou, V., Swire, J., Lomas, S. & Burt, A. Primers for fourteen protein-coding genes and the deep phylogeny of the true yeasts. FEMS Yeast Res. 13, 574-584 (2013).
-
(2013)
FEMS Yeast Res.
, vol.13
, pp. 574-584
-
-
Koufopanou, V.1
Swire, J.2
Lomas, S.3
Burt, A.4
-
63
-
-
84873036642
-
High quality de novo sequencing and assembly of the Saccharomyces arboricolus genome
-
Liti, G. et al. High quality de novo sequencing and assembly of the Saccharomyces arboricolus genome. BMC Genomics 31, 69 (2013).
-
(2013)
BMC Genomics
, vol.31
, pp. 69
-
-
Liti, G.1
-
64
-
-
67049158348
-
Fast statistical alignment
-
Bradley, R. K. et al. Fast statistical alignment. PLoS Comput. Biol. 5, e1000392 (2009).
-
(2009)
PLoS Comput. Biol.
, vol.5
-
-
Bradley, R.K.1
-
65
-
-
0242578620
-
A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood
-
DOI 10.1080/10635150390235520
-
Guindon, S. & Gascuel, O. PhyML: A simple, fast and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst. Biol. 52, 696-704 (2003). (Pubitemid 37365050)
-
(2003)
Systematic Biology
, vol.52
, Issue.5
, pp. 696-704
-
-
Guindon, S.1
Gascuel, O.2
-
66
-
-
67649884743
-
Fast and accurate short read alignment with Burrows-Wheeler transform
-
Li, H. & Durbin, R. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25, 1754-1760 (2009).
-
(2009)
Bioinformatics
, vol.25
, pp. 1754-1760
-
-
Li, H.1
Durbin, R.2
-
67
-
-
43149115851
-
Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
-
DOI 10.1101/gr.074492.107
-
Zerbino, D. R. & Birney, E. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res. 18, 821-829 (2008). (Pubitemid 351645072)
-
(2008)
Genome Research
, vol.18
, Issue.5
, pp. 821-829
-
-
Zerbino, D.R.1
Birney, E.2
-
68
-
-
12344269924
-
GO::TermFinder - Open source software for accessing Gene Ontology information and finding significantly enriched Gene Ontology terms associated with a list of genes
-
DOI 10.1093/bioinformatics/bth456
-
Boyle, E. I. et al. GO::TermFinder-open source software for accessing Gene Ontology information and finding significantly enriched Gene Ontology terms associated with a list of genes. Bioinformatics 20, 3710-3715 (2004). (Pubitemid 40136825)
-
(2004)
Bioinformatics
, vol.20
, Issue.18
, pp. 3710-3715
-
-
Boyle, E.I.1
Weng, S.2
Gollub, J.3
Jin, H.4
Botstein, D.5
Cherry, J.M.6
Sherlock, G.7
-
69
-
-
84860591356
-
Analysis of the Saccharomyces cerevisiae pan-genome reveals a pool of copy number variants distributed in diverse yeast strains from differing industrial environments
-
Dunn, B., Richter, C., Kvitek, D. J., Pugh, T. & Sherlock, G. Analysis of the Saccharomyces cerevisiae pan-genome reveals a pool of copy number variants distributed in diverse yeast strains from differing industrial environments. Genome Res. 22, 908-924 (2012).
-
(2012)
Genome Res.
, vol.22
, pp. 908-924
-
-
Dunn, B.1
Richter, C.2
Kvitek, D.J.3
Pugh, T.4
Sherlock, G.5
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