Rapid identification of Saccharomyces eubayanus and its hybrids

FEMS Yeast Research

Volumn 13, Issue 2, 2013, Pages 156-161

  Pengelly, Reuben J ^a,b   Wheals, Alan E ^a  

^a University of Bath   (United Kingdom)

^b UNIVERSITY OF SOUTHAMPTON   (United Kingdom)

Author keywords

Colony PCR; Multiplex; Species specific primers

Indexed keywords

ARTICLE; FUNGAL GENOME; FUNGUS ISOLATION; NONHUMAN; PHYLOGENY; POLYMERASE CHAIN REACTION; SACCHAROMYCES; SACCHAROMYCES BAYANUS; SACCHAROMYCES EUBAYANUS;

ARGENTINA; CROSSES, GENETIC; DNA PRIMERS; DNA, FUNGAL; MYCOLOGY; POLYMERASE CHAIN REACTION; RECOMBINATION, GENETIC; SACCHAROMYCES;

SACCHAROMYCES; SACCHAROMYCES BAYANUS; SACCHAROMYCES CEREVISIAE; SACCHAROMYCES PASTORIANUS;

EID: 84873748187     PISSN: 15671356     EISSN: 15671364     Source Type: Journal    
DOI: 10.1111/1567-1364.12018     Document Type: Article

References (22)

1. Dunn B & Sherlock G (2008) Reconstruction of the genome origins and evolution of the hybrid lager yeast Saccharomyces pastorianus. Genome Res 18: 1610-1623.
2. Galeote V, Novo M, Salema-Oom M, Brion C, Valério E, Gonçalves P & Dequin S (2010) FSY1, a horizontally transferred gene in the Saccharomyces cerevisiae EC1118 wine yeast strain, encodes a high affinity fructose/H+ symporter. Microbiol UK 156: 3754-3761.
3. Gonçalves P, Rodrigues de Sousa H & Spencer-Martins I (2000) FSY1, a novel gene encoding a specific fructose/H+ symporter in the type strain of Saccharomyces carlsbergensis. J Bacteriol 182: 5628-5630.
4. Gonzalez SS, Barrio E, Gafner J & Querol A (2006) Natural hybrids from Saccharomyces cerevisiae, Saccharomyces bayanus and Saccharomyces kudriavzevii in wine fermentations. FEMS Yeast Res 6: 1221-1234.
5. Harrison E, Muir A, Stratford M & Wheals A (2011) Species-specific PCR primers for the rapid identification of yeast of the genus Zygosaccharomyces. FEMS Yeast Res 11: 356-365.
6. Libkind D, Hittinger CT, Valério E, Gonçalves C, Dover J, Johnston M, Gonçalves P & Sampaio JP (2011) Microbe domestication and the identification of the wild genetic stock of lager-brewing yeast. P Natl Acad Sci USA 108: 14539-14544.
7. Liti G, Carter DM, Moses AM et al. (2009) Population genomics of domestic and wild yeasts. Nature 458: 337-341.
8. Muir A, Harrison E & Wheals A (2011) A multiplex set of species-specific primers for rapid identification of members of the genus Saccharomyces. FEMS Yeast Res 11: 522-563.
9. Nakao Y, Kanomori T, Itoh T, Kodama Y, Rainieri S, Nakamura N, Shimonaga T, Hattori M & Ashikari T (2009) Genome sequence of the lager brewing yeast, an interspecies hybrid. DNA Res 16: 115-129.
10. Naumov GI, Naumova ES, Aigle M, Masneuf I & Belarbi A (2001) Genetic reidentification of the pectinolytic yeast strain SCPP as Saccharomyces bayanus var. uvarum. Appl Microbiol Biotechnol 55: 108-111.
11. Naumov GI, Serpova EV & Naumova ES (2006) A genetically isolated population of Saccharomyces cerevisiae in Malaysia. Mikrobiologiia (in Russian) 75: 245-249.
12. Naumova ES, Naumov GI, Michailova YV, Martynenko NN & Masneuf-Pomarède I (2011) Genetic diversity study of the yeast Saccharomyces bayanus var. uvarum reveals introgressed subtelomeric Saccharomyces cerevisiae genes. Res Microbiol 162: 204-213.
13. Nguyen H-V & Gaillardin C (2005) Evolutionary relationships between the former species Saccharomyces uvarum and the hybrids Saccharomyces bayanus and Saccharomyces pastorianus; reinstatement of Saccharomyces uvarum (Beijerinck) as a distinct species. FEMS Yeast Res 5: 471-483.
14. T. PLoS One 6: e25821.
15. Novo M, Bigey F, Beyne E et al. (2010) Eukaryote-to-eukaryote gene transfer events revealed by the genome sequence of the wine yeast Saccharomyces cerevisiae EC1118. P Natl Acad Sci USA 106: 16333-16338.
16. Peterson SW & Kurtzman CP (1991) Ribosomal RNA sequence divergence among sibling species of yeasts. Syst Appl Microbiol 14: 124-129.
17. Saitou N & Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4: 406-425.
18. Sampaio JP & Gonçalves P (2008) Natural populations of Saccharomyces kudriavzevii in Portugal are associated with oak bark and are sympatric with S. cerevisiae and S. paradoxus. Appl Environ Microbiol 74: 2144-2152.
19. Scannell DR, Butler G & Wolfe KH (2007) Yeast genome evolution - the origin of the species. Yeast 24: 929-942.
20. Scannell DR, Zill OA, Rokas A, Payen C, Dunham MJ, Eisen MB, Rine J, Johnston M & Hittinger CT (2011) The awesome power of yeast evolutionary genetics: new genome sequences and strain resources for the Saccharomyces sensu stricto genus. G3 1: 11-25.
21. Tamura K, Peterson D, Peterson N, Stecher G, Nei M & Kumar S (2011) MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28: 2731-2739.
22. Torriani S, Zapparoli G, Malacrinò P, Suzzi G & Dellaglio F (2004) Rapid identification and differentiation of Saccharomyces cerevisiae, Saccharomyces bayanus and their hybrids by multiplex PCR. Letts Appl Microbiol 38: 239-244.