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e225 This report reinforces the utility of whole-genome sequencing of resistant mutants for target identification coupled with structure-guided drug design in the transition between lead molecules and drugs.
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Discovery of a potent and specific M. tuberculosis Leucyl-tRNA synthetase inhibitor: (S)-3-(aminomethyl)-4-chloro-7-(2-hydroxyethoxy)benzo[c][1,2]oxaborol-1(3H)-ol (GSK656)
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Palencia, A., Li, X., Bu, W., Choi, W., Ding, C.Z., Easom, E.E., Feng, L., Hernandez, V., Houston, P., Liu, L., et al. Discovery of novel oral protein synthesis inhibitors of M. tuberculosis that target leucyl-tRNA synthetase. Antimicrob Agents Chemother 60 (2016), 6271–6280.
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Kasbekar, M., Fischer, G., Mott, B.T., Yasgar, A., Hyvonen, M., Boshoff, H.I., Abell, C., Barry, C.E. 3rd, Thomas, C.J., Selective small molecule inhibitor of the Mycobacterium tuberculosis fumarate hydratase reveals an allosteric regulatory site. Proc Natl Acad Sci U S A 113 (2016), 7503–7508.
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Liu, Y., Zhou, S., Deng, Q., Li, X., Meng, J., Guan, Y., Li, C., Xiao, C., Identification of a novel inhibitor of isocitrate lyase as a potent antitubercular agent against both active and non-replicating Mycobacterium tuberculosis. Tuberculosis (Edinb) 97 (2016), 38–46.
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VanderVen, B.C., Fahey, R.J., Lee, W., Liu, Y., Abramovitch, R.B., Memmott, C., Crowe, A.M., Eltis, L.D., Perola, E., Deininger, D.D., et al. Novel inhibitors of cholesterol degradation in Mycobacterium tuberculosis reveal how the bacterium's metabolism is constrained by the intracellular environment. PLoS Pathog, 11, 2015, e1004679.
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Christophe, T., Jackson, M., Jeon, H.K., Fenistein, D., Contreras-Dominguez, M., Kim, J., Genovesio, A., Carralot, J.P., Ewann, F., Kim, E.H., et al. High content screening identifies decaprenyl-phosphoribose 2’ epimerase as a target for intracellular antimycobacterial inhibitors. PLoS Pathog, 5, 2009, e1000645.
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Silva-Miranda, M., Ekaza, E., Breiman, A., Asehnoune, K., Barros-Aguirre, D., Pethe, K., Ewann, F., Brodin, P., Ballell-Pages, L., Altare, F., High-content screening technology combined with a human granuloma model as a new approach to evaluate the activities of drugs against Mycobacterium tuberculosis. Antimicrob Agents Chemother 59 (2015), 693–697.
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Puissegur, M.P., Botanch, C., Duteyrat, J.L., Delsol, G., Caratero, C., Altare, F., An in vitro dual model of mycobacterial granulomas to investigate the molecular interactions between mycobacteria and human host cells. Cell Microbiol 6 (2004), 423–433.
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Inhibiting mycobacterial tryptophan synthase by targeting the inter-subunit interface
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Abrahams, K.A., Cox, J.A.G., Futterer, K., Rullas, J., Ortega-Muro, F., Loman, N.J., Moynihan, P.J., Perez-Herran, E., Jimenez, E., Esquivias, J., et al. Inhibiting mycobacterial tryptophan synthase by targeting the inter-subunit interface. Sci Rep, 7, 2017, 9430.
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This paper describes the inhibition of a highly dynamic, multi-subunit metabolic enzyme within vivo essentiality via uncompetitive mechanisms using a small molecule that binds to an allosteric site. This paper opened up a new paradigm in the design of next-generation antimicrobials that don't necessarily bind to the active site.
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Wellington, S., Nag, P.P., Michalska, K., Johnston, S.E., Jedrzejczak, R.P., Kaushik, V.K., Clatworthy, A.E., Siddiqi, N., McCarren, P., Bajrami, B., et al. A small-molecule allosteric inhibitor of Mycobacterium tuberculosis tryptophan synthase. Nat Chem Biol 13 (2017), 943–950 This paper describes the inhibition of a highly dynamic, multi-subunit metabolic enzyme within vivo essentiality via uncompetitive mechanisms using a small molecule that binds to an allosteric site. This paper opened up a new paradigm in the design of next-generation antimicrobials that don't necessarily bind to the active site.
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Brunner, K., Maric, S., Reshma, R.S., Almqvist, H., Seashore-Ludlow, B., Gustavsson, A.L., Poyraz, O., Yogeeswari, P., Lundback, T., Vallin, M., et al. Inhibitors of the cysteine synthase CysM with antibacterial potency against dormant Mycobacterium tuberculosis. J Med Chem 59 (2016), 6848–6859.
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Brunner, K.1
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Mishra, A., Mamidi, A.S., Rajmani, R.S., Ray, A., Roy, R., Surolia, A., An allosteric inhibitor of Mycobacterium tuberculosis ArgJ: implications to a novel combinatorial therapy. EMBO Mol Med, 2018.
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Zhang, Y.J., Reddy, M.C., Ioerger, T.R., Rothchild, A.C., Dartois, V., Schuster, B.M., Trauner, A., Wallis, D., Galaviz, S., Huttenhower, C., et al. Tryptophan biosynthesis protects mycobacteria from CD4 T-cell-mediated killing. Cell 155 (2013), 1296–1308.
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This paper argues that while inhibition of essential enzymes should intuitively lead toin vivo efficacy, levels of bioavailable metabolites can rescue bacterial growth and render the drug inactive. Hence, drug discovery efforts should not bias against non-essential targets.
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Park, Y., Pacitto, A., Bayliss, T., Cleghorn, L.A., Wang, Z., Hartman, T., Arora, K., Ioerger, T.R., Sacchettini, J., Rizzi, M., et al. Essential but not vulnerable: indazole sulfonamides targeting inosine monophosphate dehydrogenase as potential leads against Mycobacterium tuberculosis. ACS Infect Dis 3 (2017), 18–33 This paper argues that while inhibition of essential enzymes should intuitively lead toin vivo efficacy, levels of bioavailable metabolites can rescue bacterial growth and render the drug inactive. Hence, drug discovery efforts should not bias against non-essential targets.
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Park, Y.1
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22
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Fragment-based approach to targeting inosine-5’-monophosphate dehydrogenase (IMPDH) from Mycobacterium tuberculosis
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Trapero, A., Pacitto, A., Singh, V., Sabbah, M., Coyne, A.G., Mizrahi, V., Blundell, T.L., Ascher, D.B., Abell, C., Fragment-based approach to targeting inosine-5’-monophosphate dehydrogenase (IMPDH) from Mycobacterium tuberculosis. J Med Chem, 2018.
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Trapero, A.1
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Mizrahi, V.6
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23
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A novel small-molecule inhibitor of the Mycobacterium tuberculosis demethylmenaquinone methyltransferase MenG is bactericidal to both growing and nutritionally deprived persister cells
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Sukheja, P., Kumar, P., Mittal, N., Li, S.G., Singleton, E., Russo, R., Perryman, A.L., Shrestha, R., Awasthi, D., Husain, S., et al. A novel small-molecule inhibitor of the Mycobacterium tuberculosis demethylmenaquinone methyltransferase MenG is bactericidal to both growing and nutritionally deprived persister cells. MBio, 8, 2017.
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Sukheja, P.1
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24
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Rational design, synthesis, and biological evaluation of heterocyclic quinolones targeting the respiratory chain of Mycobacterium tuberculosis
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Hong, W.D., Gibbons, P.D., Leung, S.C., Amewu, R., Stocks, P.A., Stachulski, A., Horta, P., Cristiano, M.L.S., Shone, A.E., Moss, D., et al. Rational design, synthesis, and biological evaluation of heterocyclic quinolones targeting the respiratory chain of Mycobacterium tuberculosis. J Med Chem 60 (2017), 3703–3726.
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Hong, W.D.1
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25
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Discovery of imidazo[1,2-a]pyridine ethers and squaramides as selective and potent inhibitors of mycobacterial adenosine triphosphate (ATP) synthesis
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Tantry, S.J., Markad, S.D., Shinde, V., Bhat, J., Balakrishnan, G., Gupta, A.K., Ambady, A., Raichurkar, A., Kedari, C., Sharma, S., et al. Discovery of imidazo[1,2-a]pyridine ethers and squaramides as selective and potent inhibitors of mycobacterial adenosine triphosphate (ATP) synthesis. J Med Chem 60 (2017), 1379–1399.
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Tantry, S.J.1
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Ambady, A.7
Raichurkar, A.8
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26
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This paper reported twoM. tuberculosis strains that can be used to rapidly triage hits from whole-cell screening to filter out cell wall biosynthesis inhibitors and DNA damaging agents avoiding the identification of redundant targets downstream of the MOA studies.
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Naran, K., Moosa, A., Barry, C.E. 3rd, Boshoff, H.I., Mizrahi, V., Warner, D.F., Bioluminescent reporters for rapid mechanism of action assessment in tuberculosis drug discovery. Antimicrob Agents Chemother 60 (2016), 6748–6757 This paper reported twoM. tuberculosis strains that can be used to rapidly triage hits from whole-cell screening to filter out cell wall biosynthesis inhibitors and DNA damaging agents avoiding the identification of redundant targets downstream of the MOA studies.
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Naran, K.1
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27
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Arora, K., Ochoa-Montano, B., Tsang, P.S., Blundell, T.L., Dawes, S.S., Mizrahi, V., Bayliss, T., Mackenzie, C.J., Cleghorn, L.A., Ray, P.C., et al. Respiratory flexibility in response to inhibition of cytochrome C oxidase in Mycobacterium tuberculosis. Antimicrob Agents Chemother 58 (2014), 6962–6965.
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Antimicrob Agents Chemother
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Arora, K.1
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Tsang, P.S.3
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Mizrahi, V.6
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28
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Synthesis and evaluation of analogues of the tuberculosis drug bedaquiline containing heterocyclic B-ring units
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Choi, P.J., Sutherland, H.S., Tong, A.S.T., Blaser, A., Franzblau, S.G., Cooper, C.B., Lotlikar, M.U., Upton, A.M., Guillemont, J., Motte, M., et al. Synthesis and evaluation of analogues of the tuberculosis drug bedaquiline containing heterocyclic B-ring units. Bioorg Med Chem Lett 27 (2017), 5190–5196.
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Choi, P.J.1
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Blaser, A.4
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29
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Structure–activity relationships for analogs of the tuberculosis drug bedaquiline with the naphthalene unit replaced by bicyclic heterocycles
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Sutherland, H.S., Tong, A.S.T., Choi, P.J., Conole, D., Blaser, A., Franzblau, S.G., Cooper, C.B., Upton, A.M., Lotlikar, M.U., Denny, W.A., et al. Structure–activity relationships for analogs of the tuberculosis drug bedaquiline with the naphthalene unit replaced by bicyclic heterocycles. Bioorg Med Chem, 2018.
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Bioorg Med Chem
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Sutherland, H.S.1
Tong, A.S.T.2
Choi, P.J.3
Conole, D.4
Blaser, A.5
Franzblau, S.G.6
Cooper, C.B.7
Upton, A.M.8
Lotlikar, M.U.9
Denny, W.A.10
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Structure–activity relationships of spectinamide antituberculosis agents: a dissection of ribosomal inhibition and native efflux avoidance contributions
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Liu, J., Bruhn, D.F., Lee, R.B., Zheng, Z., Janusic, T., Scherbakov, D., Scherman, M.S., Boshoff, H.I., Das, S., Rakesh, et al. Structure–activity relationships of spectinamide antituberculosis agents: a dissection of ribosomal inhibition and native efflux avoidance contributions. ACS Infect Dis 3 (2017), 72–88.
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Liu, J.1
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Madhura, D.B., Liu, J., Meibohm, B., Lee, R.E., Phase II metabolic pathways of spectinamide antitubercular agents: a comparative study of the reactivity of 4-substituted pyridines to glutathione conjugation. MedChemComm 7 (2016), 114–117.
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