메뉴 건너뛰기




Volumn 16, Issue 2, 2018, Pages 67-79

Functional horizontal gene transfer from bacteria to eukaryotes

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; PEPTIDOGLYCAN;

EID: 85043706978     PISSN: 17401526     EISSN: 17401534     Source Type: Journal    
DOI: 10.1038/nrmicro.2017.137     Document Type: Review
Times cited : (335)

References (150)
  • 1
    • 0034780910 scopus 로고    scopus 로고
    • Horizontal gene transfer in prokaryotes: Quantification and classification
    • Koonin, E. V., Makarova, K. S. & Aravind, L. Horizontal gene transfer in prokaryotes: quantification and classification. Annu. Rev. Microbiol. 55, 709-742 (2001).
    • (2001) Annu. Rev. Microbiol. , vol.55 , pp. 709-742
    • Koonin, E.V.1    Makarova, K.S.2    Aravind, L.3
  • 2
    • 23944499633 scopus 로고    scopus 로고
    • Horizontal gene transfer, genome innovation and evolution
    • Gogarten, J. P. & Townsend, J. P. Horizontal gene transfer, genome innovation and evolution. Nat. Rev. Microbiol. 3, 679-687 (2005).
    • (2005) Nat. Rev. Microbiol. , vol.3 , pp. 679-687
    • Gogarten, J.P.1    Townsend, J.P.2
  • 3
    • 23944475626 scopus 로고    scopus 로고
    • Mechanisms of, and barriers to, horizontal gene transfer between bacteria
    • Thomas, C. M. & Nielsen, K. M. Mechanisms of, and barriers to, horizontal gene transfer between bacteria. Nat. Rev. Microbiol. 3, 711-721 (2005).
    • (2005) Nat. Rev. Microbiol. , vol.3 , pp. 711-721
    • Thomas, C.M.1    Nielsen, K.M.2
  • 4
    • 84937405121 scopus 로고    scopus 로고
    • Horizontal gene transfer: Building the web of life
    • Soucy, S. M., Huang, J. & Gogarten, J. P. Horizontal gene transfer: building the web of life. Nat. Rev. Genet. 16, 472-482 (2015).
    • (2015) Nat. Rev. Genet. , vol.16 , pp. 472-482
    • Soucy, S.M.1    Huang, J.2    Gogarten, J.P.3
  • 5
    • 85011004599 scopus 로고    scopus 로고
    • Horizontal gene transfer: Essentiality and evolvability in prokaryotes, and roles in evolutionary transitions
    • Koonin, E. V. Horizontal gene transfer: essentiality and evolvability in prokaryotes, and roles in evolutionary transitions. F1000Res. 5, 1805 (2016).
    • (2016) F1000Res. , vol.5 , pp. 1805
    • Koonin, E.V.1
  • 6
    • 85023647176 scopus 로고    scopus 로고
    • Mechanisms of gene flow in archaea
    • Wagner, A. et al. Mechanisms of gene flow in archaea. Nat. Rev. Microbiol. 15, 492-501 (2017).
    • (2017) Nat. Rev. Microbiol. , vol.15 , pp. 492-501
    • Wagner, A.1
  • 7
    • 84870200615 scopus 로고    scopus 로고
    • Evolutionary implications of horizontal gene transfer
    • Syvanen, M. Evolutionary implications of horizontal gene transfer. Annu. Rev. Genet. 46, 341-358 (2012).
    • (2012) Annu. Rev. Genet. , vol.46 , pp. 341-358
    • Syvanen, M.1
  • 8
    • 84964850303 scopus 로고    scopus 로고
    • What is the tree of life?
    • Doolittle, W. F. et al. What is the tree of life? PLOS Genet. 12, e1005912 (2016).
    • (2016) PLOS Genet. , vol.12 , pp. e1005912
    • Doolittle, W.F.1
  • 9
    • 0242354974 scopus 로고    scopus 로고
    • Horizontal gene transfer and phylogenetics
    • Philippe, H. & Douady, C. J. Horizontal gene transfer and phylogenetics. Curr. Opin. Microbiol. 6, 498-505 (2003).
    • (2003) Curr. Opin. Microbiol. , vol.6 , pp. 498-505
    • Philippe, H.1    Douady, C.J.2
  • 10
    • 0742323538 scopus 로고    scopus 로고
    • Endosymbiotic gene transfer: Organelle genomes forge eukaryotic chromosomes
    • Timmis, J. N., Ayliffe, M. A., Huang, C. Y. & Martin, W. Endosymbiotic gene transfer: organelle genomes forge eukaryotic chromosomes. Nat. Rev. Genet. 5, 123-135 (2004).
    • (2004) Nat. Rev. Genet. , vol.5 , pp. 123-135
    • Timmis, J.N.1    Ayliffe, M.A.2    Huang, C.Y.3    Martin, W.4
  • 11
    • 47649104484 scopus 로고    scopus 로고
    • Horizontal gene transfer in eukaryotic evolution
    • Keeling, P. J. & Palmer, J. D. Horizontal gene transfer in eukaryotic evolution. Nat. Rev. Genet. 9, 605-618 (2008).
    • (2008) Nat. Rev. Genet. , vol.9 , pp. 605-618
    • Keeling, P.J.1    Palmer, J.D.2
  • 12
    • 84874163102 scopus 로고    scopus 로고
    • Patterns of prokaryotic lateral gene transfers affecting parasitic microbial eukaryotes
    • Alsmark, C. et al. Patterns of prokaryotic lateral gene transfers affecting parasitic microbial eukaryotes. Genome Biol. 14, R19 (2013).
    • (2013) Genome Biol. , vol.14 , pp. R19
    • Alsmark, C.1
  • 13
    • 84889681836 scopus 로고    scopus 로고
    • Horizontal gene acquisitions by eukaryotes as drivers of adaptive evolution
    • Schönknecht, G., Weber, A. P. M. & Lercher, M. J. Horizontal gene acquisitions by eukaryotes as drivers of adaptive evolution. Bioessays 36, 9-20 (2014).
    • (2014) Bioessays , vol.36 , pp. 9-20
    • Schönknecht, G.1    Weber, A.P.M.2    Lercher, M.J.3
  • 14
    • 84986571195 scopus 로고    scopus 로고
    • Transfer of DNA from bacteria to eukaryotes
    • Lacroix, B. & Citovsky, V. Transfer of DNA from bacteria to eukaryotes. MBio 7, e00863-e00816 (2016).
    • (2016) MBio , vol.7 , pp. e00816-e00863
    • Lacroix, B.1    Citovsky, V.2
  • 15
    • 84887277415 scopus 로고    scopus 로고
    • A review of bacteria-animal lateral gene transfer may inform our understanding of diseases like cancer
    • Robinson, K. M., Sieber, K. B. & Dunning Hotopp, J. C. A review of bacteria-animal lateral gene transfer may inform our understanding of diseases like cancer. PLoS Genet. 9, e1003877 (2013).
    • (2013) PLoS Genet. , vol.9 , pp. e1003877
    • Robinson, K.M.1    Sieber, K.B.2    Dunning Hotopp, J.C.3
  • 16
    • 84891859970 scopus 로고    scopus 로고
    • Horizontal gene transfer in the acquisition of novel traits by metazoans
    • Boto, L. Horizontal gene transfer in the acquisition of novel traits by metazoans. Proc. Biol. Sci. 281, 20132450 (2014).
    • (2014) Proc. Biol. Sci. , vol.281 , pp. 20132450
    • Boto, L.1
  • 17
    • 84992554710 scopus 로고    scopus 로고
    • Horizontal gene transfer contributes to the evolution of arthropod herbivory
    • Wybouw, N., Pauchet, Y., Heckel, D. G. & Van Leeuwen, T. Horizontal gene transfer contributes to the evolution of arthropod herbivory. Genome Biol. Evol. 8, 1785-1801 (2016).
    • (2016) Genome Biol. Evol. , vol.8 , pp. 1785-1801
    • Wybouw, N.1    Pauchet, Y.2    Heckel, D.G.3    Van Leeuwen, T.4
  • 18
    • 0035827328 scopus 로고    scopus 로고
    • Microbial genes in the human genome: Lateral transfer or gene loss?
    • Salzberg, S. L. et al. Microbial genes in the human genome: lateral transfer or gene loss? Science 292, 1903-1906 (2001).
    • (2001) Science , vol.292 , pp. 1903-1906
    • Salzberg, S.L.1
  • 19
    • 85019131965 scopus 로고    scopus 로고
    • Horizontal gene transfer is not a hallmark of the human genome
    • Salzberg, S. L. Horizontal gene transfer is not a hallmark of the human genome. Genome Biol. 18, 85 (2017).
    • (2017) Genome Biol. , vol.18 , pp. 85
    • Salzberg, S.L.1
  • 20
    • 84930632893 scopus 로고    scopus 로고
    • Expression of multiple horizontally acquired genes is a hallmark of both vertebrate and invertebrate genomes
    • Crisp, A. et al. Expression of multiple horizontally acquired genes is a hallmark of both vertebrate and invertebrate genomes. Genome Biol. 16, 50 (2015).
    • (2015) Genome Biol. , vol.16 , pp. 50
    • Crisp, A.1
  • 21
    • 2042437650 scopus 로고    scopus 로고
    • Initial sequencing and analysis of the human genome
    • Lander, E. S. et al. Initial sequencing and analysis of the human genome. Nature 409, 860-921 (2001).
    • (2001) Nature , vol.409 , pp. 860-921
    • Lander, E.S.1
  • 22
    • 0035927649 scopus 로고    scopus 로고
    • Phylogenetic analyses do not support horizontal gene transfers from bacteria to vertebrates
    • Stanhope, M. J. et al. Phylogenetic analyses do not support horizontal gene transfers from bacteria to vertebrates. Nature 411, 940-944 (2001).
    • (2001) Nature , vol.411 , pp. 940-944
    • Stanhope, M.J.1
  • 23
    • 84971379329 scopus 로고    scopus 로고
    • No evidence for extensive horizontal gene transfer from the draft genome of a tardigrade
    • Arakawa, K. No evidence for extensive horizontal gene transfer from the draft genome of a tardigrade. Proc. Natl Acad. Sci. USA 113, E3057 (2016).
    • (2016) Proc. Natl Acad. Sci. USA , vol.113 , pp. E3057
    • Arakawa, K.1
  • 24
    • 84965144516 scopus 로고    scopus 로고
    • No evidence for extensive horizontal gene transfer in the genome of the tardigrade hypsibius dujardini
    • Koutsovoulos, G. et al. No evidence for extensive horizontal gene transfer in the genome of the tardigrade Hypsibius dujardini. Proc. Natl Acad. Sci. USA 113, 5053-5058 (2016).
    • (2016) Proc. Natl Acad. Sci. USA , vol.113 , pp. 5053-5058
    • Koutsovoulos, G.1
  • 25
    • 77649225628 scopus 로고    scopus 로고
    • Bacterial genes in the aphid genome: Absence of functional gene transfer from buchnera to its host
    • Nikoh, N. et al. Bacterial genes in the aphid genome: absence of functional gene transfer from Buchnera to its host. Plos Genet. 6, e1000827 (2010).
    • (2010) Plos Genet. , vol.6 , pp. e1000827
    • Nikoh, N.1
  • 26
    • 84863806861 scopus 로고    scopus 로고
    • Recurrent horizontal transfer of bacterial toxin genes to eukaryotes
    • Moran, Y., Fredman, D., Szczesny, P., Grynberg, M. & Technau, U. Recurrent horizontal transfer of bacterial toxin genes to eukaryotes. Mol. Biol. Evol. 29, 2223-2230 (2012).
    • (2012) Mol. Biol. Evol. , vol.29 , pp. 2223-2230
    • Moran, Y.1    Fredman, D.2    Szczesny, P.3    Grynberg, M.4    Technau, U.5
  • 27
    • 84882826169 scopus 로고    scopus 로고
    • Genomic evidence for ameiotic evolution in the bdelloid rotifer adineta vaga
    • Flot, J. et al. Genomic evidence for ameiotic evolution in the bdelloid rotifer Adineta vaga. Nature 500, 453-457 (2014).
    • (2014) Nature , vol.500 , pp. 453-457
    • Flot, J.1
  • 28
    • 84879348435 scopus 로고    scopus 로고
    • Horizontal gene transfer from diverse bacteria to an insect genome enables a tripartite nested mealybug symbiosis
    • Husnik, F. et al. Horizontal gene transfer from diverse bacteria to an insect genome enables a tripartite nested mealybug symbiosis. Cell 153, 1567-1578 (2013).
    • (2013) Cell , vol.153 , pp. 1567-1578
    • Husnik, F.1
  • 29
    • 84877345730 scopus 로고    scopus 로고
    • Interdomain lateral gene transfer of an essential ferrochelatase gene in human parasitic nematodes
    • Wu, B. et al. Interdomain lateral gene transfer of an essential ferrochelatase gene in human parasitic nematodes. Proc. Natl Acad. Sci. USA 110, 7748-7753 (2013).
    • (2013) Proc. Natl Acad. Sci. USA , vol.110 , pp. 7748-7753
    • Wu, B.1
  • 30
    • 84924927969 scopus 로고    scopus 로고
    • Transferred interbacterial antagonism genes augment eukaryotic innate immune function
    • Chou, S. et al. Transferred interbacterial antagonism genes augment eukaryotic innate immune function. Nature 518, 98-101 (2014).
    • (2014) Nature , vol.518 , pp. 98-101
    • Chou, S.1
  • 32
    • 84897900372 scopus 로고    scopus 로고
    • Parallel histories of horizontal gene transfer facilitated extreme reduction of endosymbiont genomes in sap-feeding insects
    • Sloan, D. B. et al. Parallel histories of horizontal gene transfer facilitated extreme reduction of endosymbiont genomes in sap-feeding insects. Mol. Biol. Evol. 31, 857-871 (2014).
    • (2014) Mol. Biol. Evol. , vol.31 , pp. 857-871
    • Sloan, D.B.1
  • 33
    • 84899644845 scopus 로고    scopus 로고
    • A gene horizontally transferred from bacteria protects arthropods from host plant cyanide poisoning
    • Wybouw, N. et al. A gene horizontally transferred from bacteria protects arthropods from host plant cyanide poisoning. eLife 3, e02365 (2014).
    • (2014) ELife , vol.3 , pp. e02365
    • Wybouw, N.1
  • 34
    • 84946147150 scopus 로고    scopus 로고
    • Metabolic coevolution in the bacterial symbiosis of whiteflies and related plant sap-feeding insects
    • Luan, J. B. et al. Metabolic coevolution in the bacterial symbiosis of whiteflies and related plant sap-feeding insects. Genome Biol. Evol. 7, 2635-2647 (2015).
    • (2015) Genome Biol. Evol. , vol.7 , pp. 2635-2647
    • Luan, J.B.1
  • 35
    • 84880712059 scopus 로고    scopus 로고
    • Exploring the costs of horizontal gene transfer
    • Baltrus, D. A. Exploring the costs of horizontal gene transfer. Trends Ecol. Evol. 28, 489-495 (2013).
    • (2013) Trends Ecol. Evol. , vol.28 , pp. 489-495
    • Baltrus, D.A.1
  • 36
    • 84903470156 scopus 로고    scopus 로고
    • Palaeosymbiosis revealed by genomic fossils of wolbachia in a strongyloidean nematode
    • Koutsovoulos, G. et al. Palaeosymbiosis revealed by genomic fossils of Wolbachia in a strongyloidean nematode. PLoS Genet. 10, e1004397 (2014).
    • (2014) PLoS Genet. , vol.10 , pp. e1004397
    • Koutsovoulos, G.1
  • 37
    • 84954315726 scopus 로고    scopus 로고
    • Population genomics of infectious and integrated wolbachia pipientis genomes in drosophila ananassae
    • Choi, J. Y., Bubnell, J. E. & Aquadro, C. F. Population genomics of infectious and integrated Wolbachia pipientis genomes in Drosophila ananassae. Genome Biol. Evol. 7, 2362-2382 (2015).
    • (2015) Genome Biol. Evol. , vol.7 , pp. 2362-2382
    • Choi, J.Y.1    Bubnell, J.E.2    Aquadro, C.F.3
  • 38
    • 33746830079 scopus 로고    scopus 로고
    • Genome analysis of the smallest free-living eukaryote ostreococcus tauri unveils many unique features
    • Derelle, E. et al. Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique features. Proc. Natl Acad. Sci. USA 103, 11647-11652 (2006).
    • (2006) Proc. Natl Acad. Sci. USA , vol.103 , pp. 11647-11652
    • Derelle, E.1
  • 39
    • 84946213308 scopus 로고    scopus 로고
    • Horizontal gene transfer in bdelloid rotifers is ancient, ongoing and more frequent in species from desiccating habitats
    • Eyres, I. et al. Horizontal gene transfer in bdelloid rotifers is ancient, ongoing and more frequent in species from desiccating habitats. BMC Biol. 13, 90 (2015).
    • (2015) BMC Biol. , vol.13 , pp. 90
    • Eyres, I.1
  • 40
    • 84937507813 scopus 로고    scopus 로고
    • Endosymbiotic gene transfer from prokaryotic pangenomes: Inherited chimerism in eukaryotes
    • Ku, C. et al. Endosymbiotic gene transfer from prokaryotic pangenomes: inherited chimerism in eukaryotes. Proc. Natl Acad. Sci. USA 112, 10139-10146 (2015).
    • (2015) Proc. Natl Acad. Sci. USA , vol.112 , pp. 10139-10146
    • Ku, C.1
  • 41
    • 84940488362 scopus 로고    scopus 로고
    • Endosymbiotic origin and differential loss of eukaryotic genes
    • Ku, C. et al. Endosymbiotic origin and differential loss of eukaryotic genes. Nature 524, 427-432 (2015).
    • (2015) Nature , vol.524 , pp. 427-432
    • Ku, C.1
  • 42
    • 84940697835 scopus 로고    scopus 로고
    • Recent events dominate interdomain lateral gene transfers between prokaryotes and eukaryotes and, with the exception of endosymbiotic gene transfers, few ancient transfer events persist
    • Katz, L. A. Recent events dominate interdomain lateral gene transfers between prokaryotes and eukaryotes and, with the exception of endosymbiotic gene transfers, few ancient transfer events persist. Phil. Trans. R. Soc. B Biol. Sci. 370, 20140324 (2015).
    • (2015) Phil. Trans. R. Soc. B Biol. Sci. , vol.370 , pp. 20140324
    • Katz, L.A.1
  • 43
    • 0037306453 scopus 로고    scopus 로고
    • Ancient horizontal gene transfer
    • Brown, J. R. Ancient horizontal gene transfer. Nat. Rev. Genet. 4, 121-132 (2003).
    • (2003) Nat. Rev. Genet. , vol.4 , pp. 121-132
    • Brown, J.R.1
  • 44
    • 85047290506 scopus 로고    scopus 로고
    • Gene transfers from diverse bacteria compensate for reductive genome evolution in the chromatophore of paulinella chromatophora
    • Nowack, E. C. M. et al. Gene transfers from diverse bacteria compensate for reductive genome evolution in the chromatophore of Paulinella chromatophora. Proc. Natl Acad. Sci. USA 113, 12214-12219 (2016).
    • (2016) Proc. Natl Acad. Sci. USA , vol.113 , pp. 12214-12219
    • Nowack, E.C.M.1
  • 45
    • 84979687755 scopus 로고    scopus 로고
    • On the reversibility of parasitism: Adaptation to a free-living lifestyle via gene acquisitions in the diplomonad trepomonas sp. PC1
    • Xu, F. et al. On the reversibility of parasitism: adaptation to a free-living lifestyle via gene acquisitions in the diplomonad Trepomonas sp. PC1. BMC Biol. 14, 62 (2016).
    • (2016) BMC Biol. , vol.14 , pp. 62
    • Xu, F.1
  • 46
    • 84870601270 scopus 로고    scopus 로고
    • Contribution of lateral gene transfers to the genome composition and parasitic ability of root-knot nematodes
    • Paganini, J. et al. Contribution of lateral gene transfers to the genome composition and parasitic ability of root-knot nematodes. PLoS ONE 7, e50875 (2012).
    • (2012) PLoS ONE , vol.7 , pp. e50875
    • Paganini, J.1
  • 47
    • 84874673466 scopus 로고    scopus 로고
    • Gene transfer from bacteria and archaea facilitated evolution of an extremophilic eukaryote
    • Schönknecht, G. et al. Gene transfer from bacteria and archaea facilitated evolution of an extremophilic eukaryote. Science 339, 1207-1210 (2013).
    • (2013) Science , vol.339 , pp. 1207-1210
    • Schönknecht, G.1
  • 48
    • 84885233255 scopus 로고    scopus 로고
    • Adaptation through horizontal gene transfer in the cryptoendolithic red alga galdieria phlegrea
    • Qiu, H. et al. Adaptation through horizontal gene transfer in the cryptoendolithic red alga Galdieria phlegrea. Curr. Biol. 23, R865-R866 (2013).
    • (2013) Curr. Biol. , vol.23 , pp. R865-R866
    • Qiu, H.1
  • 49
    • 84930363928 scopus 로고    scopus 로고
    • The role of horizontal gene transfer in the evolution of the oomycetes
    • Savory, F., Leonard, G. & Richards, T. A. The role of horizontal gene transfer in the evolution of the oomycetes. PLoS Pathog. 11, e1004805 (2015).
    • (2015) PLoS Pathog. , vol.11 , pp. e1004805
    • Savory, F.1    Leonard, G.2    Richards, T.A.3
  • 50
    • 85014108492 scopus 로고    scopus 로고
    • Lateral gene transfer in the adaptation of the anaerobic parasite blastocystis to the gut
    • Eme, L., Gentekaki, E., Curtis, B., Archibald, J. M. & Roger, A. J. Lateral gene transfer in the adaptation of the anaerobic parasite Blastocystis to the gut. Curr. Biol. 27, 807-820 (2017).
    • (2017) Curr. Biol. , vol.27 , pp. 807-820
    • Eme, L.1    Gentekaki, E.2    Curtis, B.3    Archibald, J.M.4    Roger, A.J.5
  • 51
    • 84987673767 scopus 로고    scopus 로고
    • Repeated replacement of an intrabacterial symbiont in the tripartite nested mealybug symbiosis
    • Husnik, F. & McCutcheon, J. P. Repeated replacement of an intrabacterial symbiont in the tripartite nested mealybug symbiosis. Proc. Natl Acad. Sci. USA 113, E5416-E5424 (2016).
    • (2016) Proc. Natl Acad. Sci. USA , vol.113 , pp. E5416-E5424
    • Husnik, F.1    McCutcheon, J.P.2
  • 52
    • 84870723336 scopus 로고    scopus 로고
    • Biochemical diversification through foreign gene expression in bdelloid rotifers
    • Boschetti, C. et al. Biochemical diversification through foreign gene expression in bdelloid rotifers. PLoS Genet. 8, e1003035 (2012).
    • (2012) PLoS Genet. , vol.8 , pp. e1003035
    • Boschetti, C.1
  • 53
    • 72449164089 scopus 로고    scopus 로고
    • Acquisition of prokaryotic genes by fungal genomes
    • Marcet-Houben, M. & Gabaldón, T. Acquisition of prokaryotic genes by fungal genomes. Trends Genet. 26, 5-8 (2010).
    • (2010) Trends Genet. , vol.26 , pp. 5-8
    • Marcet-Houben, M.1    Gabaldón, T.2
  • 54
    • 0032404453 scopus 로고    scopus 로고
    • You are what you eat: A gene transfer ratchet could account for bacterial genes in eukaryotic nuclear genomes
    • Ford Doolittle, W. You are what you eat: a gene transfer ratchet could account for bacterial genes in eukaryotic nuclear genomes. Trends Genet. 14, 307-311 (1998).
    • (1998) Trends Genet. , vol.14 , pp. 307-311
    • Ford Doolittle, W.1
  • 55
    • 84946033866 scopus 로고    scopus 로고
    • Dimensions of horizontal gene transfer in eukaryotic microbial pathogens
    • Gluck-Thaler, E. & Slot, J. C. Dimensions of horizontal gene transfer in eukaryotic microbial pathogens. PLoS Pathog. 11, e1005156 (2015).
    • (2015) PLoS Pathog. , vol.11 , pp. e1005156
    • Gluck-Thaler, E.1    Slot, J.C.2
  • 56
    • 84884718654 scopus 로고    scopus 로고
    • Horizontal gene transfer in eukaryotes: The weak-link model
    • Huang, J. Horizontal gene transfer in eukaryotes: the weak-link model. Bioessays 35, 868-875 (2013).
    • (2013) Bioessays , vol.35 , pp. 868-875
    • Huang, J.1
  • 57
    • 79953063688 scopus 로고    scopus 로고
    • Horizontal gene transfer between bacteria and animals
    • Dunning Hotopp, J. C. Horizontal gene transfer between bacteria and animals. Trends Genet. 27, 157-163 (2011).
    • (2011) Trends Genet. , vol.27 , pp. 157-163
    • Dunning Hotopp, J.C.1
  • 58
    • 84899506246 scopus 로고    scopus 로고
    • Presence of extensive wolbachia symbiont insertions discovered in the genome of its host glossina morsitans morsitans
    • Brelsfoard, C. et al. Presence of extensive Wolbachia symbiont insertions discovered in the genome of its host Glossina morsitans morsitans. PLoS Negl. Trop. Dis. 8, e2728 (2014).
    • (2014) PLoS Negl. Trop. Dis. , vol.8 , pp. e2728
    • Brelsfoard, C.1
  • 59
    • 84924290240 scopus 로고    scopus 로고
    • Extensive duplication of the wolbachia DNA in chromosome four of drosophila ananassae
    • Klasson, L. et al. Extensive duplication of the Wolbachia DNA in chromosome four of Drosophila ananassae. BMC Genomics 15, 1097 (2014).
    • (2014) BMC Genomics , vol.15 , pp. 1097
    • Klasson, L.1
  • 60
    • 77953229115 scopus 로고    scopus 로고
    • The mechanism of double-strand DNA break repair by the nonhomologous DNA end-joining pathway
    • Lieber, M. R. The mechanism of double-strand DNA break repair by the nonhomologous DNA end-joining pathway. Annu. Rev. Biochem. 79, 181-211 (2010).
    • (2010) Annu. Rev. Biochem. , vol.79 , pp. 181-211
    • Lieber, M.R.1
  • 61
    • 78650727966 scopus 로고    scopus 로고
    • Gorgeous mosaic of mitochondrial genes created by horizontal transfer and gene conversion
    • Hao, W., Richardson, A. O., Zheng, Y. & Palmer, J. D. Gorgeous mosaic of mitochondrial genes created by horizontal transfer and gene conversion. Proc. Natl Acad. Sci. USA 107, 21576-21581 (2010).
    • (2010) Proc. Natl Acad. Sci. USA , vol.107 , pp. 21576-21581
    • Hao, W.1    Richardson, A.O.2    Zheng, Y.3    Palmer, J.D.4
  • 62
    • 34548768028 scopus 로고    scopus 로고
    • Widespread lateral gene transfer from intracellular bacteria to multicellular eukaryotes
    • Dunning Hotopp, J. C. et al. Widespread lateral gene transfer from intracellular bacteria to multicellular eukaryotes. Science 317, 1753-1756 (2007).
    • (2007) Science , vol.317 , pp. 1753-1756
    • Dunning Hotopp, J.C.1
  • 63
    • 84951065506 scopus 로고    scopus 로고
    • Wolbachia co infection in a hybrid zone: Discovery of horizontal gene transfers from two wolbachia supergroups into an animal genome
    • Funkhouser-Jones, L. J. et al. Wolbachia co infection in a hybrid zone: discovery of horizontal gene transfers from two Wolbachia supergroups into an animal genome. PeerJ 3, e1479 (2015).
    • (2015) PeerJ , vol.3 , pp. e1479
    • Funkhouser-Jones, L.J.1
  • 64
    • 85007424328 scopus 로고    scopus 로고
    • Birth of a W sex chromosome by horizontal transfer of wolbachia bacterial symbiont genome
    • Leclercq, S. et al. Birth of a W sex chromosome by horizontal transfer of Wolbachia bacterial symbiont genome. Proc. Natl Acad. Sci. USA 113, 15036-15041 (2016).
    • (2016) Proc. Natl Acad. Sci. USA , vol.113 , pp. 15036-15041
    • Leclercq, S.1
  • 65
    • 84860795612 scopus 로고    scopus 로고
    • Efficient subtraction of insect rRNA prior to transcriptome analysis of wolbachia-drosophila lateral gene transfer
    • Kumar, N. et al. Efficient subtraction of insect rRNA prior to transcriptome analysis of Wolbachia-Drosophila lateral gene transfer. BMC Res. Notes 5, 230 (2012).
    • (2012) BMC Res. Notes , vol.5 , pp. 230
    • Kumar, N.1
  • 66
    • 19344368527 scopus 로고    scopus 로고
    • Continued colonization of the human genome by mitochondrial DNA
    • Ricchetti, M., Tekaia, F. & Dujon, B. Continued colonization of the human genome by mitochondrial DNA. PLoS Biol. 2, E273 (2004).
    • (2004) PLoS Biol. , vol.2 , pp. E273
    • Ricchetti, M.1    Tekaia, F.2    Dujon, B.3
  • 67
    • 0033523903 scopus 로고    scopus 로고
    • Mitochondrial DNA repairs double-strand breaks in yeast chromosomes
    • Ricchetti, M., Fairhead, C. & Dujon, B. Mitochondrial DNA repairs double-strand breaks in yeast chromosomes. Nature 402, 96-100 (1999).
    • (1999) Nature , vol.402 , pp. 96-100
    • Ricchetti, M.1    Fairhead, C.2    Dujon, B.3
  • 69
    • 77955265557 scopus 로고    scopus 로고
    • Endosymbiont DNA in endobacteria-free filarial nematodes indicates ancient horizontal genetic transfer
    • McNulty, S. N. et al. Endosymbiont DNA in endobacteria-free filarial nematodes indicates ancient horizontal genetic transfer. PLoS ONE 5, e11029 (2010).
    • (2010) PLoS ONE , vol.5 , pp. e11029
    • McNulty, S.N.1
  • 70
    • 84863237607 scopus 로고    scopus 로고
    • Adaptive horizontal transfer of a bacterial gene to an invasive insect pest of coffee
    • Acuna, R. et al. Adaptive horizontal transfer of a bacterial gene to an invasive insect pest of coffee. Proc. Natl Acad. Sci. USA 109, 4197-4202 (2012).
    • (2012) Proc. Natl Acad. Sci. USA , vol.109 , pp. 4197-4202
    • Acuna, R.1
  • 71
    • 84892394322 scopus 로고    scopus 로고
    • The genome of the mustard leaf beetle encodes two active xylanases originally acquired from bacteria through horizontal gene transfer
    • Pauchet, Y. & Heckel, D. G. The genome of the mustard leaf beetle encodes two active xylanases originally acquired from bacteria through horizontal gene transfer. Proc. Biol. Sci. 280, 20131021 (2013).
    • (2013) Proc. Biol. Sci. , vol.280 , pp. 20131021
    • Pauchet, Y.1    Heckel, D.G.2
  • 72
    • 45849089569 scopus 로고    scopus 로고
    • Massive horizontal gene transfer in bdelloid rotifers
    • Gladyshev, E. A., Meselson, M. & Arkhipova, I. R. Massive horizontal gene transfer in bdelloid rotifers. Science 320, 1210-1213 (2008).
    • (2008) Science , vol.320 , pp. 1210-1213
    • Gladyshev, E.A.1    Meselson, M.2    Arkhipova, I.R.3
  • 73
    • 84872601972 scopus 로고    scopus 로고
    • Multiple ancient horizontal gene transfers and duplications in lepidopteran species
    • Sun, B. F. et al. Multiple ancient horizontal gene transfers and duplications in lepidopteran species. Insect Mol. Biol. 22, 72-87 (2013).
    • (2013) Insect Mol. Biol. , vol.22 , pp. 72-87
    • Sun, B.F.1
  • 74
    • 0037398519 scopus 로고    scopus 로고
    • How introns influence and enhance eukaryotic gene expression
    • Le Hir, H., Nott, A. & Moore, M. J. How introns influence and enhance eukaryotic gene expression. Trends Biochem. Sci. 28, 215-220 (2003).
    • (2003) Trends Biochem. Sci. , vol.28 , pp. 215-220
    • Le Hir, H.1    Nott, A.2    Moore, M.J.3
  • 75
    • 77957103993 scopus 로고    scopus 로고
    • Evidence for horizontally transferred genes involved in the biosynthesis of vitamin B1, B5, and B7 in heterodera glycines
    • Craig, J. P., Bekal, S., Niblack, T., Domier, L. & Lambert, K. N. Evidence for horizontally transferred genes involved in the biosynthesis of vitamin B1, B5, and B7 in Heterodera glycines. J. Nematol. 41, 281-290 (2009).
    • (2009) J. Nematol. , vol.41 , pp. 281-290
    • Craig, J.P.1    Bekal, S.2    Niblack, T.3    Domier, L.4    Lambert, K.N.5
  • 76
    • 56249098614 scopus 로고    scopus 로고
    • The phaeodactylum genome reveals the evolutionary history of diatom genomes
    • Bowler, C. et al. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Nature 456, 239-244 (2008).
    • (2008) Nature , vol.456 , pp. 239-244
    • Bowler, C.1
  • 77
    • 78049316906 scopus 로고    scopus 로고
    • Multiple lateral gene transfers and duplications have promoted plant parasitism ability in nematodes
    • Danchin, E. G. J. et al. Multiple lateral gene transfers and duplications have promoted plant parasitism ability in nematodes. Proc. Natl Acad. Sci. USA 107, 17651-17656 (2010).
    • (2010) Proc. Natl Acad. Sci. USA , vol.107 , pp. 17651-17656
    • Danchin, E.G.J.1
  • 78
    • 21144441817 scopus 로고    scopus 로고
    • Lateral gene transfer in eukaryotes
    • Andersson, J. O. et al. Lateral gene transfer in eukaryotes. Cell. Mol. Life Sci. 62, 1182-1197 (2005).
    • (2005) Cell. Mol. Life Sci. , vol.62 , pp. 1182-1197
    • Andersson, J.O.1
  • 79
    • 84943402350 scopus 로고    scopus 로고
    • Endosymbiosis and eukaryotic cell evolution
    • Archibald, J. M. Endosymbiosis and eukaryotic cell evolution. Curr. Biol. 25, R911-R921 (2015).
    • (2015) Curr. Biol. , vol.25 , pp. R911-R921
    • Archibald, J.M.1
  • 81
    • 84905513696 scopus 로고    scopus 로고
    • The dispersed archaeal eukaryome and the complex archaeal ancestor of eukaryotes
    • Koonin, E. V. & Yutin, N. The dispersed archaeal eukaryome and the complex archaeal ancestor of eukaryotes. Cold Spring Harb. Perspect. Biol. 6, a016188 (2014).
    • (2014) Cold Spring Harb. Perspect. Biol. , vol.6 , pp. a016188
    • Koonin, E.V.1    Yutin, N.2
  • 82
    • 85010903539 scopus 로고    scopus 로고
    • An early-branching freshwater cyanobacterium at the origin of plastids
    • Ponce-Toledo, R. I. et al. An early-branching freshwater cyanobacterium at the origin of plastids. Curr. Biol. 27, 386-391 (2017).
    • (2017) Curr. Biol. , vol.27 , pp. 386-391
    • Ponce-Toledo, R.I.1
  • 83
    • 84939803790 scopus 로고    scopus 로고
    • An integrated phylogenomic approach toward pinpointing the origin of mitochondria
    • Wang, Z. & Wu, M. An integrated phylogenomic approach toward pinpointing the origin of mitochondria. Sci. Rep. 5, 7949 (2015).
    • (2015) Sci. Rep. , vol.5 , pp. 7949
    • Wang, Z.1    Wu, M.2
  • 84
    • 84939863150 scopus 로고    scopus 로고
    • Mosaic nature of the mitochondrial proteome: Implications for the origin and evolution of mitochondria
    • Gray, M. W. Mosaic nature of the mitochondrial proteome: implications for the origin and evolution of mitochondria. Proc. Natl Acad. Sci. USA 112, 10133-10138 (2015).
    • (2015) Proc. Natl Acad. Sci. USA , vol.112 , pp. 10133-10138
    • Gray, M.W.1
  • 85
    • 84871714058 scopus 로고    scopus 로고
    • Loss, replacement and gain of proteins at the origin of the mitochondria
    • Huynen, M. A., Duarte, I. & Szklarczyk, R. Loss, replacement and gain of proteins at the origin of the mitochondria. Biochim. Biophys. Acta 1827, 224-231 (2013).
    • (2013) Biochim. Biophys. Acta , vol.1827 , pp. 224-231
    • Huynen, M.A.1    Duarte, I.2    Szklarczyk, R.3
  • 86
    • 36949022294 scopus 로고    scopus 로고
    • From endosymbiont to host-controlled organelle: The hijacking of mitochondrial protein synthesis and metabolism
    • Gabaldón, T. & Huynen, M. A. From endosymbiont to host-controlled organelle: the hijacking of mitochondrial protein synthesis and metabolism. PLoS Comput. Biol. 3, e219 (2007).
    • (2007) PLoS Comput. Biol. , vol.3 , pp. e219
    • Gabaldón, T.1    Huynen, M.A.2
  • 87
    • 4143093598 scopus 로고    scopus 로고
    • A genome phylogeny for mitochondria among α-proteobacteria and a predominantly eubacterial ancestry of yeast nuclear genes
    • Esser, C. et al. A genome phylogeny for mitochondria among α-proteobacteria and a predominantly eubacterial ancestry of yeast nuclear genes. Mol. Biol. Evol. 21, 1643-1660 (2004).
    • (2004) Mol. Biol. Evol. , vol.21 , pp. 1643-1660
    • Esser, C.1
  • 88
    • 84862562185 scopus 로고    scopus 로고
    • An evolutionary network of genes present in the eukaryote common ancestor polls genomes on eukaryotic and mitochondrial origin
    • Thiergart, T., Landan, G., Schenk, M., Dagan, T. & Martin, W. F. An evolutionary network of genes present in the eukaryote common ancestor polls genomes on eukaryotic and mitochondrial origin. Genome Biol. Evol. 4, 466-485 (2012).
    • (2012) Genome Biol. Evol. , vol.4 , pp. 466-485
    • Thiergart, T.1    Landan, G.2    Schenk, M.3    Dagan, T.4    Martin, W.F.5
  • 89
    • 0034443285 scopus 로고    scopus 로고
    • Origin and evolution of the mitochondrial proteome
    • Kurland, C. G. & Andersson, S. G. Origin and evolution of the mitochondrial proteome. Microbiol. Mol. Biol. Rev. 64, 786-820 (2000).
    • (2000) Microbiol. Mol. Biol. Rev. , vol.64 , pp. 786-820
    • Kurland, C.G.1    Andersson, S.G.2
  • 90
    • 77249157747 scopus 로고    scopus 로고
    • Eukaryotic and eubacterial contributions to the establishment of plastid proteome estimated by large-scale phylogenetic analyses
    • Suzuki, K. & Miyagishima, S. Eukaryotic and eubacterial contributions to the establishment of plastid proteome estimated by large-scale phylogenetic analyses. Mol. Biol. Evol. 27, 581-590 (2010).
    • (2010) Mol. Biol. Evol. , vol.27 , pp. 581-590
    • Suzuki, K.1    Miyagishima, S.2
  • 91
    • 85009734290 scopus 로고    scopus 로고
    • Asgard arcahea illuminates the origin of eukaryotic cellular complexity
    • Zaremba-Niedzwiedzka, K. et al. Asgard arcahea illuminates the origin of eukaryotic cellular complexity. Nature 541, 353-358 (2017).
    • (2017) Nature , vol.541 , pp. 353-358
    • Zaremba-Niedzwiedzka, K.1
  • 92
    • 84960153141 scopus 로고    scopus 로고
    • Late acquisition of mitochondria by a host with chimaeric prokaryotic ancestry
    • Pittis, A. A. & Gabaldón, T. Late acquisition of mitochondria by a host with chimaeric prokaryotic ancestry. Nature 531, 101-104 (2016).
    • (2016) Nature , vol.531 , pp. 101-104
    • Pittis, A.A.1    Gabaldón, T.2
  • 93
    • 84946478324 scopus 로고    scopus 로고
    • Archaeal ancestors of eukaryotes: Not so elusive any more
    • Koonin, E. V. Archaeal ancestors of eukaryotes: not so elusive any more. BMC Biol. 13, 84 (2015).
    • (2015) BMC Biol. , vol.13 , pp. 84
    • Koonin, E.V.1
  • 94
    • 84929329445 scopus 로고    scopus 로고
    • Complex archaea that bridge the gap between prokaryotes and eukaryotes
    • Spang, A. et al. Complex archaea that bridge the gap between prokaryotes and eukaryotes. Nature 521, 173-179 (2015).
    • (2015) Nature , vol.521 , pp. 173-179
    • Spang, A.1
  • 95
    • 85016738800 scopus 로고    scopus 로고
    • How really ancient is paulinella chromatophora?
    • Delaye, L., Valadez-Cano, C. & Pérez-Zamorano, B. How really ancient is Paulinella chromatophora? PLoS Curr. http://dx.doi.org/10.1371/currents.tol. e68a099364bb1a1e129a17b4e06b0c6b (2016).
    • (2016) PLoS Curr.
    • Delaye, L.1    Valadez-Cano, C.2    Pérez-Zamorano, B.3
  • 96
    • 84896737748 scopus 로고    scopus 로고
    • Biosynthesis of vitamins and cofactors in bacterium-harbouring trypanosomatids depends on the symbiotic association as revealed by genomic analyses
    • Klein, C. C. et al. Biosynthesis of vitamins and cofactors in bacterium-harbouring trypanosomatids depends on the symbiotic association as revealed by genomic analyses. PLoS ONE 8, e79786 (2013).
    • (2013) PLoS ONE , vol.8 , pp. e79786
    • Klein, C.C.1
  • 97
    • 84883501248 scopus 로고    scopus 로고
    • Endosymbiosis in trypanosomatids: The genomic cooperation between bacterium and host in the synthesis of essential amino acids is heavily influenced by multiple horizontal gene transfers
    • Alves, J. M. P. et al. Endosymbiosis in trypanosomatids: the genomic cooperation between bacterium and host in the synthesis of essential amino acids is heavily influenced by multiple horizontal gene transfers. BMC Evol. Biol. 13, 190 (2013).
    • (2013) BMC Evol. Biol. , vol.13 , pp. 190
    • Alves, J.M.P.1
  • 99
    • 84897604624 scopus 로고    scopus 로고
    • The pre-endosymbiont hypothesis: A new perspective on the origin and evolution of mitochondria
    • Gray, M. W. The pre-endosymbiont hypothesis: a new perspective on the origin and evolution of mitochondria. Cold Spring Harb. Perspect. Biol. 6, a016097 (2014).
    • (2014) Cold Spring Harb. Perspect. Biol. , vol.6 , pp. a016097
    • Gray, M.W.1
  • 100
    • 84888437974 scopus 로고    scopus 로고
    • Assessing the bacterial contribution to the plastid proteome
    • Qiu, H. et al. Assessing the bacterial contribution to the plastid proteome. Trends Plant Sci. 18, 680-687 (2013).
    • (2013) Trends Plant Sci. , vol.18 , pp. 680-687
    • Qiu, H.1
  • 101
    • 84966545960 scopus 로고    scopus 로고
    • A eukaryote without a mitochondrial organelle
    • Karnkowska, A. et al. A eukaryote without a mitochondrial organelle. Curr. Biol. 26, 1274-1284 (2016).
    • (2016) Curr. Biol. , vol.26 , pp. 1274-1284
    • Karnkowska, A.1
  • 102
    • 33645456207 scopus 로고    scopus 로고
    • Eukaryotic evolution, changes and challenges
    • Embley, T. M. & Martin, W. Eukaryotic evolution, changes and challenges. Nature 440, 623-630 (2006).
    • (2006) Nature , vol.440 , pp. 623-630
    • Embley, T.M.1    Martin, W.2
  • 103
    • 47249127801 scopus 로고    scopus 로고
    • β-fructofuranosidase genes of the silkworm, bombyx mori: Insights into enzymatic adaptation of B. Mori to toxic alkaloids in mulberry latex
    • Daimon, T. et al. β-fructofuranosidase genes of the silkworm, Bombyx mori: insights into enzymatic adaptation of B. mori to toxic alkaloids in mulberry latex. J. Biol. Chem. 283, 15271-15279 (2008).
    • (2008) J. Biol. Chem. , vol.283 , pp. 15271-15279
    • Daimon, T.1
  • 104
    • 84903974186 scopus 로고    scopus 로고
    • Horizontal gene transfer of a bacterial insect toxin gene into the epichloë fungal symbionts of grasses
    • Ambrose, K. V., Koppenhöfer, A. M. & Belanger, F. C. Horizontal gene transfer of a bacterial insect toxin gene into the Epichloë fungal symbionts of grasses. Sci. Rep. 4, 5562 (2014).
    • (2014) Sci. Rep. , vol.4 , pp. 5562
    • Ambrose, K.V.1    Koppenhöfer, A.M.2    Belanger, F.C.3
  • 105
    • 0036678865 scopus 로고    scopus 로고
    • A single photorhabdus gene, makes caterpillars floppy (mcf), allows Escherichia coli to persist within and kill insects
    • Daborn, P. J. et al. A single Photorhabdus gene, makes caterpillars floppy (mcf), allows Escherichia coli to persist within and kill insects. Proc. Natl Acad. Sci. USA 99, 10742-10747 (2002).
    • (2002) Proc. Natl Acad. Sci. USA , vol.99 , pp. 10742-10747
    • Daborn, P.J.1
  • 106
    • 33645295532 scopus 로고    scopus 로고
    • Horizontal gene transfer from bacteria to rumen ciliates indicates adaptation to their anaerobic, carbohydrates-rich environment
    • Ricard, G. et al. Horizontal gene transfer from bacteria to rumen ciliates indicates adaptation to their anaerobic, carbohydrates-rich environment. BMC Genomics 7, 22 (2006).
    • (2006) BMC Genomics , vol.7 , pp. 22
    • Ricard, G.1
  • 108
    • 84870607366 scopus 로고    scopus 로고
    • Lateral gene transfers have polished animal genomes: Lessons from nematodes
    • Danchin, E. G. J. & Rosso, M. N. Lateral gene transfers have polished animal genomes: lessons from nematodes. Front. Cell. Infect. Microbiol. 2, 27 (2012).
    • (2012) Front. Cell. Infect. Microbiol. , vol.2 , pp. 27
    • Danchin, E.G.J.1    Rosso, M.N.2
  • 109
    • 84864535558 scopus 로고    scopus 로고
    • Expressional and functional variation of horizontally acquired cellulases in the nematode pristionchus pacificus
    • Schuster, L. N. & Sommer, R. J. Expressional and functional variation of horizontally acquired cellulases in the nematode Pristionchus pacificus. Gene 506, 274-282 (2012).
    • (2012) Gene , vol.506 , pp. 274-282
    • Schuster, L.N.1    Sommer, R.J.2
  • 110
    • 85007400650 scopus 로고    scopus 로고
    • Transcriptional regulation of a horizontally transferred gene from bacterium to chordate
    • Sasakura, Y. et al. Transcriptional regulation of a horizontally transferred gene from bacterium to chordate. Proc. Biol. Sci. 283, 20161712 (2016).
    • (2016) Proc. Biol. Sci. , vol.283 , pp. 20161712
    • Sasakura, Y.1
  • 111
    • 21144435581 scopus 로고    scopus 로고
    • Phylogenomic evidence supports past endosymbiosis, intracellular and horizontal gene transfer in cryptosporidium parvum
    • Huang, J. et al. Phylogenomic evidence supports past endosymbiosis, intracellular and horizontal gene transfer in Cryptosporidium parvum. Genome Biol. 5, R88 (2004).
    • (2004) Genome Biol. , vol.5 , pp. R88
    • Huang, J.1
  • 112
    • 58749100808 scopus 로고    scopus 로고
    • Ferritin is used for iron storage in bloom-forming marine pennate diatoms
    • Marchetti, A. et al. Ferritin is used for iron storage in bloom-forming marine pennate diatoms. Nature 457, 467-470 (2009).
    • (2009) Nature , vol.457 , pp. 467-470
    • Marchetti, A.1
  • 113
    • 48749127648 scopus 로고    scopus 로고
    • Whole-cell response of the pennate diatom phaeodactylum tricornutum to iron starvation
    • Allen, A. E. et al. Whole-cell response of the pennate diatom Phaeodactylum tricornutum to iron starvation. Proc. Natl Acad. Sci. USA 105, 10438-10443 (2008).
    • (2008) Proc. Natl Acad. Sci. USA , vol.105 , pp. 10438-10443
    • Allen, A.E.1
  • 114
    • 18344395923 scopus 로고    scopus 로고
    • The genome of the social amoeba dictyostelium discoideum
    • Eichinger, L. et al. The genome of the social amoeba Dictyostelium discoideum. Nature 435, 43-57 (2005).
    • (2005) Nature , vol.435 , pp. 43-57
    • Eichinger, L.1
  • 115
    • 79952842676 scopus 로고    scopus 로고
    • Evolution of patchily distributed proteins shared between eukaryotes and prokaryotes: Dictyostelium as a case study
    • Andersson, J. O. Evolution of patchily distributed proteins shared between eukaryotes and prokaryotes: Dictyostelium as a case study. J. Mol. Microbiol. Biotechnol. 20, 83-95 (2011).
    • (2011) J. Mol. Microbiol. Biotechnol. , vol.20 , pp. 83-95
    • Andersson, J.O.1
  • 116
    • 64849088316 scopus 로고    scopus 로고
    • Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes micromonas
    • Worden, A. Z. et al. Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science 375, 268-272 (2009).
    • (2009) Science , vol.375 , pp. 268-272
    • Worden, A.Z.1
  • 117
    • 0033752502 scopus 로고    scopus 로고
    • Lateral gene transfer and metabolic adaptation in the human parasite trichomonas vaginalis
    • de Koning, A. P., Brinkman, F. S. L., Jones, S. J. M. & Keeling, P. J. Lateral gene transfer and metabolic adaptation in the human parasite Trichomonas vaginalis. Mol. Biol. Evol. 17, 1769-1773 (2000).
    • (2000) Mol. Biol. Evol. , vol.17 , pp. 1769-1773
    • De Koning, A.P.1    Brinkman, F.S.L.2    Jones, S.J.M.3    Keeling, P.J.4
  • 118
    • 79951728606 scopus 로고    scopus 로고
    • Horizontally acquired DAP pathway as a unit of self-regulation
    • Sun, G. & Huang, J. Horizontally acquired DAP pathway as a unit of self-regulation. J. Evol. Biol. 24, 587-595 (2011).
    • (2011) J. Evol. Biol. , vol.24 , pp. 587-595
    • Sun, G.1    Huang, J.2
  • 119
    • 52449097223 scopus 로고    scopus 로고
    • Analysis of a horizontally transferred pathway involved in vitamin B6 biosynthesis from the soybean cyst nematode heterodera glycines
    • Craig, J. P. et al. Analysis of a horizontally transferred pathway involved in vitamin B6 biosynthesis from the soybean cyst nematode Heterodera glycines. Mol. Biol. Evol. 25, 2085-2098 (2008).
    • (2008) Mol. Biol. Evol. , vol.25 , pp. 2085-2098
    • Craig, J.P.1
  • 120
    • 85016137064 scopus 로고    scopus 로고
    • Evolutionary genomics of the cold-adapted diatom fragilariopsis cylindrus
    • Mock, T. et al. Evolutionary genomics of the cold-adapted diatom Fragilariopsis cylindrus. Nature 541, 536-540 (2017).
    • (2017) Nature , vol.541 , pp. 536-540
    • Mock, T.1
  • 121
    • 84860436217 scopus 로고    scopus 로고
    • Possible role of horizontal gene transfer in the colonization of sea ice by algae
    • Raymond, J. A. et al. Possible role of horizontal gene transfer in the colonization of sea ice by algae. PLoS ONE 7, e35968 (2012).
    • (2012) PLoS ONE , vol.7 , pp. e35968
    • Raymond, J.A.1
  • 122
    • 84861408399 scopus 로고    scopus 로고
    • The genome of the polar eukaryotic microalga coccomyxa subellipsoidea reveals traits of cold adaptation
    • Blanc, G. et al. The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation. Genome Biol. 13, R39 (2012).
    • (2012) Genome Biol. , vol.13 , pp. R39
    • Blanc, G.1
  • 123
    • 85019735760 scopus 로고    scopus 로고
    • Adaptations to high salt in a halophilic protist: Differential expression and gene acquisitions through duplications and gene transfers
    • Harding, T., Roger, A. J. & Simpson, A. G. B. Adaptations to high salt in a halophilic protist: differential expression and gene acquisitions through duplications and gene transfers. Front. Microbiol. 8, 944 (2017).
    • (2017) Front. Microbiol. , vol.8 , pp. 944
    • Harding, T.1    Roger, A.J.2    Simpson, A.G.B.3
  • 124
    • 4344662030 scopus 로고    scopus 로고
    • Class II photolyase in a microsporidian intracellular parasite
    • Slamovits, C. H. & Keeling, P. J. Class II photolyase in a microsporidian intracellular parasite. J. Mol. Biol. 341, 713-721 (2004).
    • (2004) J. Mol. Biol. , vol.341 , pp. 713-721
    • Slamovits, C.H.1    Keeling, P.J.2
  • 125
    • 0142153849 scopus 로고    scopus 로고
    • Bacterial catalase in the microsporidian nosema locustae: Implications for microsporidian metabolism and genome evolution
    • Fast, N. M., Law, J. S., Williams, B. A. P. & Keeling, P. J. Bacterial catalase in the microsporidian Nosema locustae: implications for microsporidian metabolism and genome evolution. Eukaryot. Cell 2, 1069-1075 (2003).
    • (2003) Eukaryot. Cell , vol.2 , pp. 1069-1075
    • Fast, N.M.1    Law, J.S.2    Williams, B.A.P.3    Keeling, P.J.4
  • 126
    • 84920589654 scopus 로고    scopus 로고
    • Biology wars: The eukaryotes strike back
    • Dunning Hotopp, J. C. et al. Biology wars: the eukaryotes strike back. Cell Host Microbe 16, 701-703 (2014).
    • (2014) Cell Host Microbe , vol.16 , pp. 701-703
    • Dunning Hotopp, J.C.1
  • 127
    • 84907405451 scopus 로고    scopus 로고
    • Rapid transcriptome sequencing of an invasive pest, the brown marmorated stink bug halyomorpha halys
    • Ioannidis, P. et al. Rapid transcriptome sequencing of an invasive pest, the brown marmorated stink bug Halyomorpha halys. BMC Genomics 15, 738 (2014).
    • (2014) BMC Genomics , vol.15 , pp. 738
    • Ioannidis, P.1
  • 128
    • 84869409983 scopus 로고    scopus 로고
    • Widespread impact of horizontal gene transfer on plant colonization of land
    • Yue, J., Hu, X., Sun, H., Yang, Y. & Huang, J. Widespread impact of horizontal gene transfer on plant colonization of land. Nat. Commun. 3, 1152 (2012).
    • (2012) Nat. Commun. , vol.3 , pp. 1152
    • Yue, J.1    Hu, X.2    Sun, H.3    Yang, Y.4    Huang, J.5
  • 129
    • 84982962132 scopus 로고    scopus 로고
    • Moss chloroplasts are surrounded by a peptidoglycan wall containing D amino acids
    • Hirano, T. et al. Moss chloroplasts are surrounded by a peptidoglycan wall containing D amino acids. Plant Cell 28, 1521-1532 (2016).
    • (2016) Plant Cell , vol.28 , pp. 1521-1532
    • Hirano, T.1
  • 130
    • 33646260701 scopus 로고    scopus 로고
    • Genes for the peptidoglycan synthesis pathway are essential for chloroplast division in moss
    • Machida, M. et al. Genes for the peptidoglycan synthesis pathway are essential for chloroplast division in moss. Proc. Natl Acad. Sci. USA 103, 6753-6758 (2006).
    • (2006) Proc. Natl Acad. Sci. USA , vol.103 , pp. 6753-6758
    • Machida, M.1
  • 131
    • 40549087637 scopus 로고    scopus 로고
    • An arabidopsis homolog of the bacterial peptidoglycan synthesis enzyme MurE has an essential role in chloroplast development
    • Garcia, M. et al. An Arabidopsis homolog of the bacterial peptidoglycan synthesis enzyme MurE has an essential role in chloroplast development. Plant J. 53, 924-934 (2008).
    • (2008) Plant J. , vol.53 , pp. 924-934
    • Garcia, M.1
  • 132
    • 85027958029 scopus 로고    scopus 로고
    • Peptidoglycan recognition proteins: Modulators of the microbiome and inflammation
    • Royet, J., Gupta, D. & Dziarski, R. Peptidoglycan recognition proteins: modulators of the microbiome and inflammation. Nat. Rev. Immunol. 11, 837-851 (2011).
    • (2011) Nat. Rev. Immunol. , vol.11 , pp. 837-851
    • Royet, J.1    Gupta, D.2    Dziarski, R.3
  • 133
    • 84869227842 scopus 로고    scopus 로고
    • Knowing your friends: Invertebrate innate immunity fosters beneficial bacterial symbioses
    • Nyholm, S. V. & Graf, J. Knowing your friends: invertebrate innate immunity fosters beneficial bacterial symbioses. Nat. Rev. Microbiol. 10, 815-827 (2012).
    • (2012) Nat. Rev. Microbiol. , vol.10 , pp. 815-827
    • Nyholm, S.V.1    Graf, J.2
  • 134
    • 67749098054 scopus 로고    scopus 로고
    • Interactions between mutualist wigglesworthia and tsetse peptidoglycan recognition protein (PGRP LB) influence trypanosome transmission
    • Wang, J. W., Wu, Y. N., Yang, G. X. & Aksoy, S. Interactions between mutualist Wigglesworthia and tsetse peptidoglycan recognition protein (PGRP LB) influence trypanosome transmission. Proc. Natl Acad. Sci. USA 106, 12133-12138 (2009).
    • (2009) Proc. Natl Acad. Sci. USA , vol.106 , pp. 12133-12138
    • Wang, J.W.1    Wu, Y.N.2    Yang, G.X.3    Aksoy, S.4
  • 135
    • 84941200881 scopus 로고    scopus 로고
    • Burkholderia bacteria infectiously induce the proto-farming symbiosis of dictyostelium amoebae and food bacteria
    • DiSalvo, S. et al. Burkholderia bacteria infectiously induce the proto-farming symbiosis of Dictyostelium amoebae and food bacteria. Proc. Natl Acad. Sci. USA 112, E5029-E5037 (2015).
    • (2015) Proc. Natl Acad. Sci. USA , vol.112 , pp. E5029-E5037
    • DiSalvo, S.1
  • 136
    • 84920644670 scopus 로고    scopus 로고
    • Reagent and laboratory contamination can critically impact sequence-based microbiome analyses
    • Salter, S. J. et al. Reagent and laboratory contamination can critically impact sequence-based microbiome analyses. BMC Biol. 12, 87 (2014).
    • (2014) BMC Biol. , vol.12 , pp. 87
    • Salter, S.J.1
  • 137
    • 78651315449 scopus 로고    scopus 로고
    • Foreign genes and novel hydrophilic protein genes participate in the desiccation response of the bdelloid rotifer adineta ricciae
    • Boschetti, C. et al. Foreign genes and novel hydrophilic protein genes participate in the desiccation response of the bdelloid rotifer Adineta ricciae. J. Exp. Biol. 214, 59-68 (2011).
    • (2011) J. Exp. Biol. , vol.214 , pp. 59-68
    • Boschetti, C.1
  • 138
    • 84875325188 scopus 로고    scopus 로고
    • Characterization of an ancient lepidopteran lateral gene transfer
    • Wheeler, D., Redding, A. J. & Werren, J. H. Characterization of an ancient lepidopteran lateral gene transfer. PLoS ONE 8, e59262 (2013).
    • (2013) PLoS ONE , vol.8 , pp. e59262
    • Wheeler, D.1    Redding, A.J.2    Werren, J.H.3
  • 139
    • 85014057646 scopus 로고    scopus 로고
    • Pitfalls in supermatrix phylogenomics
    • Philippe, H. et al. Pitfalls in supermatrix phylogenomics. Eur. J. Taxon. 283, 1-25 (2017).
    • (2017) Eur. J. Taxon. , vol.283 , pp. 1-25
    • Philippe, H.1
  • 140
    • 0036623258 scopus 로고    scopus 로고
    • An approximately unbiased test of phylogenetic tree selection
    • Shimodaira, H. An approximately unbiased test of phylogenetic tree selection. Syst. Biol. 51, 492-508 (2002).
    • (2002) Syst. Biol. , vol.51 , pp. 492-508
    • Shimodaira, H.1
  • 141
    • 80053058594 scopus 로고    scopus 로고
    • Horizontal gene transfer facilitated the evolution of plant parasitic mechanisms in the oomycetes
    • Richards, T. A. et al. Horizontal gene transfer facilitated the evolution of plant parasitic mechanisms in the oomycetes. Proc. Natl Acad. Sci. USA 108, 15258-15263 (2011).
    • (2011) Proc. Natl Acad. Sci. USA , vol.108 , pp. 15258-15263
    • Richards, T.A.1
  • 142
    • 79959401340 scopus 로고    scopus 로고
    • Eukaryotic pyruvate formate lyase and its activating enzyme were acquired laterally from a firmicute
    • Stairs, C. W., Roger, A. J. & Hampl, V. Eukaryotic pyruvate formate lyase and its activating enzyme were acquired laterally from a firmicute. Mol. Biol. Evol. 28, 2087-2099 (2011).
    • (2011) Mol. Biol. Evol. , vol.28 , pp. 2087-2099
    • Stairs, C.W.1    Roger, A.J.2    Hampl, V.3
  • 143
    • 33845484210 scopus 로고    scopus 로고
    • The glycolytic pathway of trimastix pyriformis is an evolutionary mosaic
    • Stechmann, A. et al. The glycolytic pathway of Trimastix pyriformis is an evolutionary mosaic. BMC Evol. Biol. 6, 101 (2006).
    • (2006) BMC Evol. Biol. , vol.6 , pp. 101
    • Stechmann, A.1
  • 144
    • 38649122429 scopus 로고    scopus 로고
    • The [FeFe] hydrogenase of nyctotherus ovalis has a chimeric origin
    • Boxma, B. et al. The [FeFe] hydrogenase of Nyctotherus ovalis has a chimeric origin. BMC Evol. Biol. 7, 230 (2007).
    • (2007) BMC Evol. Biol. , vol.7 , pp. 230
    • Boxma, B.1
  • 145
    • 0034751692 scopus 로고    scopus 로고
    • Presence of prokaryotic and eukaryotic species in all subgroups of the PPi-dependent group II phosphofructokinase protein family
    • Müller, M., Lee, J. A., Gordon, P., Gaasterland, T. & Sensen, C. W. Presence of prokaryotic and eukaryotic species in all subgroups of the PPi-dependent group II phosphofructokinase protein family. J. Bacteriol. 183, 6714-6716 (2001).
    • (2001) J. Bacteriol. , vol.183 , pp. 6714-6716
    • Müller, M.1    Lee, J.A.2    Gordon, P.3    Gaasterland, T.4    Sensen, C.W.5
  • 146
    • 0036549786 scopus 로고    scopus 로고
    • Evidence for lateral transfer of genes encoding ferredoxins, nitroreductases, NADH oxidase, and alcohol dehydrogenase 3 from anaerobic prokaryotes to giardia lamblia and entamoeba histolytica
    • Nixon, J. E. J. et al. Evidence for lateral transfer of genes encoding ferredoxins, nitroreductases, NADH oxidase, and alcohol dehydrogenase 3 from anaerobic prokaryotes to Giardia lamblia and Entamoeba histolytica. Eukaryot. Cell 1, 181-190 (2002).
    • (2002) Eukaryot. Cell , vol.1 , pp. 181-190
    • Nixon, J.E.J.1
  • 147
    • 84962436417 scopus 로고    scopus 로고
    • Beg, borrow and steal: Three aspects of horizontal gene transfer in the protozoan parasite, cryptosporidium parvum
    • Sateriale, A. & Striepen, B. Beg, borrow and steal: three aspects of horizontal gene transfer in the protozoan parasite, Cryptosporidium parvum. PLoS Pathog. 12, e1005429 (2016).
    • (2016) PLoS Pathog. , vol.12 , pp. e1005429
    • Sateriale, A.1    Striepen, B.2
  • 148
    • 3042677643 scopus 로고    scopus 로고
    • Horizontal gene transfer promoted evolution of the ability to propagate under anaerobic conditions in yeasts
    • Gojkovic, Z. et al. Horizontal gene transfer promoted evolution of the ability to propagate under anaerobic conditions in yeasts. Mol. Genet. Genomics 271, 387-393 (2004).
    • (2004) Mol. Genet. Genomics , vol.271 , pp. 387-393
    • Gojkovic, Z.1
  • 149
    • 44349083493 scopus 로고    scopus 로고
    • A novel route for ATP acquisition by the remnant mitochondria of encephalitozoon cuniculi
    • Tsaousis, A. D. et al. A novel route for ATP acquisition by the remnant mitochondria of Encephalitozoon cuniculi. Nature 453, 553-556 (2008).
    • (2008) Nature , vol.453 , pp. 553-556
    • Tsaousis, A.D.1
  • 150
    • 84963764138 scopus 로고    scopus 로고
    • Horizontally acquired genes in early-diverging pathogenic fungi enable the use of host nucleosides and nucleotides
    • Alexander, W. G., Wisecaver, J. H., Rokas, A. & Hittinger, C. T. Horizontally acquired genes in early-diverging pathogenic fungi enable the use of host nucleosides and nucleotides. Proc. Natl Acad. Sci. USA 113, 4116-4121 (2016).
    • (2016) Proc. Natl Acad. Sci. USA , vol.113 , pp. 4116-4121
    • Alexander, W.G.1    Wisecaver, J.H.2    Rokas, A.3    Hittinger, C.T.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.