메뉴 건너뛰기




Volumn 7, Issue 11, 2012, Pages

Contribution of Lateral Gene Transfers to the Genome Composition and Parasitic Ability of Root-Knot Nematodes

Author keywords

[No Author keywords available]

Indexed keywords

CARBOHYDRATE;

EID: 84870601270     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0050875     Document Type: Article
Times cited : (51)

References (46)
  • 1
    • 34948840944 scopus 로고    scopus 로고
    • Symbiont genes in host genomes: fragments with a future?
    • Blaxter M, (2007) Symbiont genes in host genomes: fragments with a future? Cell Host Microbe 2: 211-213.
    • (2007) Cell Host Microbe , vol.2 , pp. 211-213
    • Blaxter, M.1
  • 2
    • 56649089802 scopus 로고    scopus 로고
    • Horizontal gene transfer of the algal nuclear gene psbO to the photosynthetic sea slug Elysia chlorotica
    • Rumpho ME, Worful JM, Lee J, Kannan K, Tyler MS, et al. (2008) Horizontal gene transfer of the algal nuclear gene psbO to the photosynthetic sea slug Elysia chlorotica. Proc Natl Acad Sci U S A 105: 17867-17871.
    • (2008) Proc Natl Acad Sci U S A , vol.105 , pp. 17867-17871
    • Rumpho, M.E.1    Worful, J.M.2    Lee, J.3    Kannan, K.4    Tyler, M.S.5
  • 3
    • 84855855908 scopus 로고    scopus 로고
    • Transcriptomic evidence for the expression of horizontally transferred algal nuclear genes in the photosynthetic sea slug, Elysia chlorotica
    • Pierce SK, Fang X, Schwartz JA, Jiang X, Zhao W, et al. (2011) Transcriptomic evidence for the expression of horizontally transferred algal nuclear genes in the photosynthetic sea slug, Elysia chlorotica. Mol Biol Evol.
    • (2011) Mol Biol Evol
    • Pierce, S.K.1    Fang, X.2    Schwartz, J.A.3    Jiang, X.4    Zhao, W.5
  • 4
    • 77951831492 scopus 로고    scopus 로고
    • Lateral transfer of genes from fungi underlies carotenoid production in aphids
    • Moran NA, Jarvik T, (2010) Lateral transfer of genes from fungi underlies carotenoid production in aphids. Science 328: 624-627.
    • (2010) Science , vol.328 , pp. 624-627
    • Moran, N.A.1    Jarvik, T.2
  • 6
    • 0003574283 scopus 로고    scopus 로고
    • Plant pathology. San Diego USA: Academic Press. pp. xvi
    • Agrios GN (1997) Plant pathology. Plant pathology. San Diego USA: Academic Press. pp. xvi +635 pp.
    • (1997) Plant pathology , pp. 635
    • Agrios, G.N.1
  • 7
    • 79960546467 scopus 로고    scopus 로고
    • Horizontal gene transfer in nematodes: a catalyst for plant parasitism?
    • Haegeman A, Jones JT, Danchin EG, (2011) Horizontal gene transfer in nematodes: a catalyst for plant parasitism? Mol Plant Microbe Interact 24: 879-887.
    • (2011) Mol Plant Microbe Interact , vol.24 , pp. 879-887
    • Haegeman, A.1    Jones, J.T.2    Danchin, E.G.3
  • 8
    • 78049316906 scopus 로고    scopus 로고
    • Multiple lateral gene transfers and duplications have promoted plant parasitism ability in nematodes
    • Danchin EG, Rosso MN, Vieira P, de Almeida-Engler J, Coutinho PM, et al. (2010) Multiple lateral gene transfers and duplications have promoted plant parasitism ability in nematodes. Proc Natl Acad Sci U S A 107: 17651-17656.
    • (2010) Proc Natl Acad Sci U S A , vol.107 , pp. 17651-17656
    • Danchin, E.G.1    Rosso, M.N.2    Vieira, P.3    de Almeida-Engler, J.4    Coutinho, P.M.5
  • 9
    • 0038576862 scopus 로고    scopus 로고
    • Horizontally transferred genes in plant-parasitic nematodes: a high-throughput genomic approach
    • Scholl EH, Thorne JL, McCarter JP, Bird DM, (2003) Horizontally transferred genes in plant-parasitic nematodes: a high-throughput genomic approach. Genome Biol 4: R39.
    • (2003) Genome Biol , vol.4
    • Scholl, E.H.1    Thorne, J.L.2    McCarter, J.P.3    Bird, D.M.4
  • 10
    • 49449094873 scopus 로고    scopus 로고
    • Genome sequence of the metazoan plant-parasitic nematode Meloidogyne incognita
    • Abad P, Gouzy J, Aury JM, Castagnone-Sereno P, Danchin EG, et al. (2008) Genome sequence of the metazoan plant-parasitic nematode Meloidogyne incognita. Nat Biotechnol 26: 909-915.
    • (2008) Nat Biotechnol , vol.26 , pp. 909-915
    • Abad, P.1    Gouzy, J.2    Aury, J.M.3    Castagnone-Sereno, P.4    Danchin, E.G.5
  • 11
    • 54149092490 scopus 로고    scopus 로고
    • Sequence and genetic map of Meloidogyne hapla: A compact nematode genome for plant parasitism
    • Opperman CH, Bird DM, Williamson VM, Rokhsar DS, Burke M, et al. (2008) Sequence and genetic map of Meloidogyne hapla: A compact nematode genome for plant parasitism. Proc Natl Acad Sci U S A 105: 14802-14807.
    • (2008) Proc Natl Acad Sci U S A , vol.105 , pp. 14802-14807
    • Opperman, C.H.1    Bird, D.M.2    Williamson, V.M.3    Rokhsar, D.S.4    Burke, M.5
  • 12
    • 0141519279 scopus 로고    scopus 로고
    • OrthoMCL: identification of ortholog groups for eukaryotic genomes
    • Li L, Stoeckert CJ Jr, Roos DS, (2003) OrthoMCL: identification of ortholog groups for eukaryotic genomes. Genome Res 13: 2178-2189.
    • (2003) Genome Res , vol.13 , pp. 2178-2189
    • Li, L.1    Stoeckert Jr., C.J.2    Roos, D.S.3
  • 13
    • 0030801002 scopus 로고    scopus 로고
    • Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
    • Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, et al. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25: 3389-3402.
    • (1997) Nucleic Acids Res , vol.25 , pp. 3389-3402
    • Altschul, S.F.1    Madden, T.L.2    Schaffer, A.A.3    Zhang, J.4    Zhang, Z.5
  • 14
    • 25444473119 scopus 로고    scopus 로고
    • FIGENIX: Intelligent automation of genomic annotation: expertise integration in a new software platform
    • Gouret P, Vitiello V, Balandraud N, Gilles A, Pontarotti P, et al. (2005) FIGENIX: Intelligent automation of genomic annotation: expertise integration in a new software platform. BMC Bioinformatics 6: 198.
    • (2005) BMC Bioinformatics , vol.6 , pp. 198
    • Gouret, P.1    Vitiello, V.2    Balandraud, N.3    Gilles, A.4    Pontarotti, P.5
  • 15
    • 84862488225 scopus 로고    scopus 로고
    • Reliable Phylogenetic Trees Building: A New Web Interface for FIGENIX
    • Paganini J, Gouret P, (2012) Reliable Phylogenetic Trees Building: A New Web Interface for FIGENIX. Evol Bioinform Online 8: 417-421.
    • (2012) Evol Bioinform Online , vol.8 , pp. 417-421
    • Paganini, J.1    Gouret, P.2
  • 16
    • 74249106740 scopus 로고    scopus 로고
    • PhyloPattern: regular expressions to identify complex patterns in phylogenetic trees
    • Gouret P, Thompson JD, Pontarotti P, (2009) PhyloPattern: regular expressions to identify complex patterns in phylogenetic trees. BMC Bioinformatics 10: 298.
    • (2009) BMC Bioinformatics , vol.10 , pp. 298
    • Gouret, P.1    Thompson, J.D.2    Pontarotti, P.3
  • 20
    • 77955658052 scopus 로고    scopus 로고
    • Promiscuous DNA: horizontal transfer of transposable elements and why it matters for eukaryotic evolution
    • Schaack S, Gilbert C, Feschotte C, (2010) Promiscuous DNA: horizontal transfer of transposable elements and why it matters for eukaryotic evolution. Trends Ecol Evol 25: 537-546.
    • (2010) Trends Ecol Evol , vol.25 , pp. 537-546
    • Schaack, S.1    Gilbert, C.2    Feschotte, C.3
  • 21
    • 45849089569 scopus 로고    scopus 로고
    • Massive horizontal gene transfer in bdelloid rotifers
    • Gladyshev EA, Meselson M, Arkhipova IR, (2008) Massive horizontal gene transfer in bdelloid rotifers. Science 320: 1210-1213.
    • (2008) Science , vol.320 , pp. 1210-1213
    • Gladyshev, E.A.1    Meselson, M.2    Arkhipova, I.R.3
  • 22
    • 80051600401 scopus 로고    scopus 로고
    • Computational archaeology of the Pristionchus pacificus genome reveals evidence of horizontal gene transfers from insects
    • Rodelsperger C, Sommer RJ, (2011) Computational archaeology of the Pristionchus pacificus genome reveals evidence of horizontal gene transfers from insects. BMC Evol Biol 11: 239.
    • (2011) BMC Evol Biol , vol.11 , pp. 239
    • Rodelsperger, C.1    Sommer, R.J.2
  • 23
    • 80053454201 scopus 로고    scopus 로고
    • Genomic Insights into the Origin of Parasitism in the Emerging Plant Pathogen Bursaphelenchus xylophilus
    • Kikuchi T, Cotton JA, Dalzell JJ, Hasegawa K, Kanzaki N, et al. (2011) Genomic Insights into the Origin of Parasitism in the Emerging Plant Pathogen Bursaphelenchus xylophilus. PLoS Pathog 7: e1002219.
    • (2011) PLoS Pathog , vol.7
    • Kikuchi, T.1    Cotton, J.A.2    Dalzell, J.J.3    Hasegawa, K.4    Kanzaki, N.5
  • 25
    • 78651268231 scopus 로고    scopus 로고
    • Horizontal gene transfer of microbial cellulases into nematode genomes is associated with functional assimilation and gene turnover
    • Mayer WE, Schuster LN, Bartelmes G, Dieterich C, Sommer RJ, (2011) Horizontal gene transfer of microbial cellulases into nematode genomes is associated with functional assimilation and gene turnover. BMC Evol Biol 11: 13.
    • (2011) BMC Evol Biol , vol.11 , pp. 13
    • Mayer, W.E.1    Schuster, L.N.2    Bartelmes, G.3    Dieterich, C.4    Sommer, R.J.5
  • 26
    • 20044369186 scopus 로고    scopus 로고
    • An adaptive radiation model for the origin of new gene functions
    • Francino MP, (2005) An adaptive radiation model for the origin of new gene functions. Nat Genet 37: 573-577.
    • (2005) Nat Genet , vol.37 , pp. 573-577
    • Francino, M.P.1
  • 28
    • 0034634395 scopus 로고    scopus 로고
    • The evolutionary fate and consequences of duplicate genes
    • Lynch M, Conery JS, (2000) The evolutionary fate and consequences of duplicate genes. Science 290: 1151-1155.
    • (2000) Science , vol.290 , pp. 1151-1155
    • Lynch, M.1    Conery, J.S.2
  • 29
    • 33748183184 scopus 로고    scopus 로고
    • Gene loss and evolutionary rates following whole-genome duplication in teleost fishes
    • Brunet FG, Roest Crollius H, Paris M, Aury JM, Gibert P, et al. (2006) Gene loss and evolutionary rates following whole-genome duplication in teleost fishes. Mol Biol Evol 23: 1808-1816.
    • (2006) Mol Biol Evol , vol.23 , pp. 1808-1816
    • Brunet, F.G.1    Roest Crollius, H.2    Paris, M.3    Aury, J.M.4    Gibert, P.5
  • 30
    • 77954423982 scopus 로고    scopus 로고
    • The role of pseudo-endoglucanases in the evolution of nematode cell wall-modifying proteins
    • Haegeman A, Kyndt T, Gheysen G, (2010) The role of pseudo-endoglucanases in the evolution of nematode cell wall-modifying proteins. J Mol Evol 70: 441-452.
    • (2010) J Mol Evol , vol.70 , pp. 441-452
    • Haegeman, A.1    Kyndt, T.2    Gheysen, G.3
  • 32
    • 84870055179 scopus 로고    scopus 로고
    • What Nematode genomes tell us about the importance of horizontal gene transfers in the evolutionary history of animals
    • Danchin ÉGJ, (2011) What Nematode genomes tell us about the importance of horizontal gene transfers in the evolutionary history of animals. Mobile Genetic Elements 1: 1-5.
    • (2011) Mobile Genetic Elements , vol.1 , pp. 1-5
    • Danchin, É.G.J.1
  • 33
    • 55949134735 scopus 로고    scopus 로고
    • Repeated horizontal transfer of a DNA transposon in mammals and other tetrapods
    • Pace JK, 2nd, Gilbert C, Clark MS, Feschotte C
    • Pace JK, 2nd, Gilbert C, Clark MS, Feschotte C (2008) Repeated horizontal transfer of a DNA transposon in mammals and other tetrapods. Proc Natl Acad Sci U S A 105: 17023-17028.
    • (2008) Proc Natl Acad Sci U S A , vol.105 , pp. 17023-17028
  • 34
    • 33745634395 scopus 로고    scopus 로고
    • Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences
    • Li W, Godzik A, (2006) Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics 22: 1658-1659.
    • (2006) Bioinformatics , vol.22 , pp. 1658-1659
    • Li, W.1    Godzik, A.2
  • 36
    • 79551624472 scopus 로고    scopus 로고
    • Considering transposable element diversification in de novo annotation approaches
    • Flutre T, Duprat E, Feuillet C, Quesneville H, (2011) Considering transposable element diversification in de novo annotation approaches. PLoS One 6: e16526.
    • (2011) PLoS One , vol.6
    • Flutre, T.1    Duprat, E.2    Feuillet, C.3    Quesneville, H.4
  • 37
    • 0034201441 scopus 로고    scopus 로고
    • EMBOSS: the European Molecular Biology Open Software Suite
    • Rice P, Longden I, Bleasby A, (2000) EMBOSS: the European Molecular Biology Open Software Suite. Trends Genet 16: 276-277.
    • (2000) Trends Genet , vol.16 , pp. 276-277
    • Rice, P.1    Longden, I.2    Bleasby, A.3
  • 38
    • 75549086985 scopus 로고    scopus 로고
    • ACLAME: a CLAssification of Mobile genetic Elements, update 2010
    • Leplae R, Lima-Mendez G, Toussaint A, (2010) ACLAME: a CLAssification of Mobile genetic Elements, update 2010. Nucleic Acids Res 38: D57-61.
    • (2010) Nucleic Acids Res , vol.38
    • Leplae, R.1    Lima-Mendez, G.2    Toussaint, A.3
  • 39
    • 0037014667 scopus 로고    scopus 로고
    • A polygalacturonase of animal origin isolated from the root-knot nematode Meloidogyne incognita
    • Jaubert S, Laffaire JB, Abad P, Rosso MN, (2002) A polygalacturonase of animal origin isolated from the root-knot nematode Meloidogyne incognita. FEBS Lett 522: 109-112.
    • (2002) FEBS Lett , vol.522 , pp. 109-112
    • Jaubert, S.1    Laffaire, J.B.2    Abad, P.3    Rosso, M.N.4
  • 40
    • 0035991210 scopus 로고    scopus 로고
    • Cloning and characterization of an esophageal-gland-specific pectate lyase from the root-knot nematode Meloidogyne javanica
    • Doyle EA, Lambert KN, (2002) Cloning and characterization of an esophageal-gland-specific pectate lyase from the root-knot nematode Meloidogyne javanica. Mol Plant Microbe Interact 15: 549-556.
    • (2002) Mol Plant Microbe Interact , vol.15 , pp. 549-556
    • Doyle, E.A.1    Lambert, K.N.2
  • 41
    • 18044388711 scopus 로고    scopus 로고
    • Developmental expression and molecular analysis of two Meloidogyne incognita pectate lyase genes
    • Huang G, Dong R, Allen R, Davis EL, Baum TJ, et al. (2005) Developmental expression and molecular analysis of two Meloidogyne incognita pectate lyase genes. Int J Parasitol 35: 685-692.
    • (2005) Int J Parasitol , vol.35 , pp. 685-692
    • Huang, G.1    Dong, R.2    Allen, R.3    Davis, E.L.4    Baum, T.J.5
  • 42
    • 0033168438 scopus 로고    scopus 로고
    • Isolation of a cDNA encoding a beta-1,4-endoglucanase in the root-knot nematode Meloidogyne incognita and expression analysis during plant parasitism
    • Rosso MN, Favery B, Piotte C, Arthaud L, De Boer JM, et al. (1999) Isolation of a cDNA encoding a beta-1,4-endoglucanase in the root-knot nematode Meloidogyne incognita and expression analysis during plant parasitism. Mol Plant Microbe Interact 12: 585-591.
    • (1999) Mol Plant Microbe Interact , vol.12 , pp. 585-591
    • Rosso, M.N.1    Favery, B.2    Piotte, C.3    Arthaud, L.4    De Boer, J.M.5
  • 43
    • 0034043821 scopus 로고    scopus 로고
    • Biochemical characterization of MI-ENG1, a family 5 endoglucanase secreted by the root-knot nematode Meloidogyne incognita
    • Bera-Maillet C, Arthaud L, Abad P, Rosso MN, (2000) Biochemical characterization of MI-ENG1, a family 5 endoglucanase secreted by the root-knot nematode Meloidogyne incognita. Eur J Biochem 267: 3255-3263.
    • (2000) Eur J Biochem , vol.267 , pp. 3255-3263
    • Bera-Maillet, C.1    Arthaud, L.2    Abad, P.3    Rosso, M.N.4
  • 44
    • 33750024444 scopus 로고    scopus 로고
    • Characterization of a new beta-1,4-endoglucanase gene from the root-knot nematode Meloidogyne incognita and evolutionary scheme for phytonematode family 5 glycosyl hydrolases
    • Ledger TN, Jaubert S, Bosselut N, Abad P, Rosso MN, (2006) Characterization of a new beta-1,4-endoglucanase gene from the root-knot nematode Meloidogyne incognita and evolutionary scheme for phytonematode family 5 glycosyl hydrolases. Gene 382: 121-128.
    • (2006) Gene , vol.382 , pp. 121-128
    • Ledger, T.N.1    Jaubert, S.2    Bosselut, N.3    Abad, P.4    Rosso, M.N.5
  • 45
    • 33646369915 scopus 로고    scopus 로고
    • A symbiont-independent endo-1,4-beta-xylanase from the plant-parasitic nematode Meloidogyne incognita
    • Mitreva-Dautova M, Roze E, Overmars H, de Graaff L, Schots A, et al. (2006) A symbiont-independent endo-1,4-beta-xylanase from the plant-parasitic nematode Meloidogyne incognita. Mol Plant Microbe Interact 19: 521-529.
    • (2006) Mol Plant Microbe Interact , vol.19 , pp. 521-529
    • Mitreva-Dautova, M.1    Roze, E.2    Overmars, H.3    de Graaff, L.4    Schots, A.5
  • 46
    • 0033118834 scopus 로고    scopus 로고
    • Cloning and characterization of an esophageal-gland-specific chorismate mutase from the phytoparasitic nematode Meloidogyne javanica
    • Lambert KN, Allen KD, Sussex IM, (1999) Cloning and characterization of an esophageal-gland-specific chorismate mutase from the phytoparasitic nematode Meloidogyne javanica. Mol Plant Microbe Interact 12: 328-336.
    • (1999) Mol Plant Microbe Interact , vol.12 , pp. 328-336
    • Lambert, K.N.1    Allen, K.D.2    Sussex, I.M.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.