메뉴 건너뛰기




Volumn 456, Issue 7219, 2008, Pages 239-244

The Phaeodactylum genome reveals the evolutionary history of diatom genomes

(77)  Bowler, Chris a,b   Allen, Andrew E a,c   Badger, Jonathan H c   Grimwood, Jane d   Jabbari, Kamel a   Kuo, Alan e   Maheswari, Uma a   Martens, Cindy f   Maumus, Florian a   Otillar, Robert P e   Rayko, Edda a   Salamov, Asaf e   Vandepoele, Klaas f   Beszteri, Bank g   Gruber, Ansgar h   Heijde, Marc a   Katinka, Michael i   Mock, Thomas j,ac   Valentin, Klaus g   Verret, Fréderic k   more..


Author keywords

[No Author keywords available]

Indexed keywords

COMPARATIVE STUDY; DIATOM; DIVERGENCE; EVOLUTIONARY BIOLOGY; GENE TRANSFER; GENOME; MARINE ECOSYSTEM; METABOLITE; PHOTOSYNTHESIS;

EID: 56249098614     PISSN: 00280836     EISSN: 14764679     Source Type: Journal    
DOI: 10.1038/nature07410     Document Type: Article
Times cited : (1330)

References (30)
  • 1
    • 0032504117 scopus 로고    scopus 로고
    • Biogeochemical controls and feedbacks on ocean primary production
    • Falkowski, P. G., Barber, R. T. & Smetacek, V. Biogeochemical controls and feedbacks on ocean primary production. Science 281, 200-206 (1998).
    • (1998) Science , vol.281 , pp. 200-206
    • Falkowski, P.G.1    Barber, R.T.2    Smetacek, V.3
  • 2
    • 0032503986 scopus 로고    scopus 로고
    • Primary production of the biosphere: Integrating terrestrial and oceanic components
    • Field, C. B., Behrenfeld, M. J., Randerson, J. T. & Falkowski, P. Primary production of the biosphere: integrating terrestrial and oceanic components. Science 281, 237-240 (1998).
    • (1998) Science , vol.281 , pp. 237-240
    • Field, C.B.1    Behrenfeld, M.J.2    Randerson, J.T.3    Falkowski, P.4
  • 3
    • 6044252163 scopus 로고    scopus 로고
    • The genome of the diatom Thalassiosira pseudonana: Ecology, evolution, and metabolism
    • Armbrust, E. V. et al. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Science 306, 79-86 (2004).
    • (2004) Science , vol.306 , pp. 79-86
    • Armbrust, E.V.1
  • 4
    • 34249011708 scopus 로고    scopus 로고
    • Identification and comparative genomic analysis of signaling and regulatory components in the diatom Thalassiosira pseudonana
    • Montsant, A. et al. Identification and comparative genomic analysis of signaling and regulatory components in the diatom Thalassiosira pseudonana. J. Phycol. 43, 585-603 (2007).
    • (2007) J. Phycol , vol.43 , pp. 585-603
    • Montsant, A.1
  • 5
    • 33947414878 scopus 로고    scopus 로고
    • Chloroplast genomes of the diatoms Phaeodactylum tricornutum and Thalassiosira pseudonana: Comparison with other plastid genomes of the red lineage
    • Oudot-Le Secq, M.-P. et al. Chloroplast genomes of the diatoms Phaeodactylum tricornutum and Thalassiosira pseudonana: comparison with other plastid genomes of the red lineage. Mol. Gen. Genom. 277, 427-439 (2007).
    • (2007) Mol. Gen. Genom , vol.277 , pp. 427-439
    • Oudot-Le Secq, M.-P.1
  • 6
    • 33746412317 scopus 로고    scopus 로고
    • Evolution of the diatoms: Insights from fossil, biological and molecular data
    • Sims, P. A., Mann, D. G. & Medlin, L. K. Evolution of the diatoms: insights from fossil, biological and molecular data. Phycologia 45, 361-402 (2006).
    • (2006) Phycologia , vol.45 , pp. 361-402
    • Sims, P.A.1    Mann, D.G.2    Medlin, L.K.3
  • 8
    • 27744513188 scopus 로고    scopus 로고
    • Synthesis of iron fertilization experiments: From the Iron Age in the Age of Enlightenment
    • doi:10.1029/2004JC002601
    • de Baar, H. J. W. et al. Synthesis of iron fertilization experiments: From the Iron Age in the Age of Enlightenment. J. Geophys. Res. 110, doi:10.1029/2004JC002601 (2005).
    • (2005) J. Geophys. Res , vol.110
    • de Baar, H.J.W.1
  • 9
    • 33748329373 scopus 로고    scopus 로고
    • Phytophthora genome sequences uncover evolutionary origins and mechanisms of pathogenesis
    • Tyler, B. M. et al. Phytophthora genome sequences uncover evolutionary origins and mechanisms of pathogenesis. Science 313, 1261-1266 (2006).
    • (2006) Science , vol.313 , pp. 1261-1266
    • Tyler, B.M.1
  • 11
    • 0032580152 scopus 로고    scopus 로고
    • A molecular timescale for vertebrate evolution
    • Kumar, S. & Hedges, S. B. A molecular timescale for vertebrate evolution. Nature 392, 917-920 (1998).
    • (1998) Nature , vol.392 , pp. 917-920
    • Kumar, S.1    Hedges, S.B.2
  • 12
    • 33745736295 scopus 로고    scopus 로고
    • Yeasts illustrate the molecular mechanisms of eukaryotic genome evolution
    • Dujon, B. Yeasts illustrate the molecular mechanisms of eukaryotic genome evolution. Trends Genet. 22, 375-387 (2006).
    • (2006) Trends Genet , vol.22 , pp. 375-387
    • Dujon, B.1
  • 13
    • 34547688982 scopus 로고    scopus 로고
    • A very high fraction of unique intron positions in the intron-rich diatom Thalassiosira pseudonana indicates widespread intron gain
    • Roy, S. W. & Penny, D. A very high fraction of unique intron positions in the intron-rich diatom Thalassiosira pseudonana indicates widespread intron gain. Mol. Biol. Evol. 24, 1447-1457 (2007).
    • (2007) Mol. Biol. Evol , vol.24 , pp. 1447-1457
    • Roy, S.W.1    Penny, D.2
  • 14
    • 33645023614 scopus 로고    scopus 로고
    • Multiple rounds of speciation associated with reciprocal gene loss in polyploid yeasts
    • Scannell, D. R., Byrne, K. P., Gordon, J. L., Wong, S. & Wolfe, K. H. Multiple rounds of speciation associated with reciprocal gene loss in polyploid yeasts. Nature 440, 341-345 (2006).
    • (2006) Nature , vol.440 , pp. 341-345
    • Scannell, D.R.1    Byrne, K.P.2    Gordon, J.L.3    Wong, S.4    Wolfe, K.H.5
  • 15
    • 33847065899 scopus 로고    scopus 로고
    • Reciprocal gene loss between Tetraodon and zebrafish after whole genome duplication in their ancestor
    • Semon, M. & Wolfe, K. H. Reciprocal gene loss between Tetraodon and zebrafish after whole genome duplication in their ancestor. Trends Genet. 23, 108-112 (2007).
    • (2007) Trends Genet , vol.23 , pp. 108-112
    • Semon, M.1    Wolfe, K.H.2
  • 16
    • 36849004368 scopus 로고    scopus 로고
    • How do endosymbionts become organelles? Understanding early events in plastid evolution
    • Bhattacharya, D., Archibald, J. M., Weber, A. P. & Reyes-Prieto, A. How do endosymbionts become organelles? Understanding early events in plastid evolution. Bioessays 29, 1239-1246 (2007).
    • (2007) Bioessays , vol.29 , pp. 1239-1246
    • Bhattacharya, D.1    Archibald, J.M.2    Weber, A.P.3    Reyes-Prieto, A.4
  • 17
    • 11144354393 scopus 로고    scopus 로고
    • Genome sequence of the ultrasmall unicellular red alga Cyanidioschyzon merolae 10D
    • Matsuzaki, M. et al. Genome sequence of the ultrasmall unicellular red alga Cyanidioschyzon merolae 10D. Nature 428, 653-657 (2004).
    • (2004) Nature , vol.428 , pp. 653-657
    • Matsuzaki, M.1
  • 18
    • 42149175948 scopus 로고    scopus 로고
    • Whole-genome analysis reveals molecular innovations and evolutionary transitions in chromalveolate species
    • Martens, C., Vandepoele, K. & Van de Peer, Y. Whole-genome analysis reveals molecular innovations and evolutionary transitions in chromalveolate species. Proc. Natl Acad. Sci. USA 105, 3427-3432 (2008).
    • (2008) Proc. Natl Acad. Sci. USA , vol.105 , pp. 3427-3432
    • Martens, C.1    Vandepoele, K.2    Van de Peer, Y.3
  • 19
    • 47649104484 scopus 로고    scopus 로고
    • Horizontal gene transfer in eukaryotic evolution
    • Keeling, P. J. & Palmer, J. D. Horizontal gene transfer in eukaryotic evolution. Nature Rev. Genet. 9, 605-618 (2008).
    • (2008) Nature Rev. Genet , vol.9 , pp. 605-618
    • Keeling, P.J.1    Palmer, J.D.2
  • 20
    • 38949120916 scopus 로고    scopus 로고
    • A model for carbohydrate metabolism in the diatom Phaeodactylum tricornutum deduced from whole genome analysis and comparative genomic analyses with Thalassiosira pseudonana and other photoautotrophs
    • Kroth, P. G. et al. A model for carbohydrate metabolism in the diatom Phaeodactylum tricornutum deduced from whole genome analysis and comparative genomic analyses with Thalassiosira pseudonana and other photoautotrophs. PLoS One 3, e1426 (2008).
    • (2008) PLoS One , vol.3
    • Kroth, P.G.1
  • 21
    • 36549060585 scopus 로고    scopus 로고
    • Prescribing diatom morphology: Toward genetic engineering of biological nanomaterials
    • Kröger, N. Prescribing diatom morphology: toward genetic engineering of biological nanomaterials. Curr. Opin. Chem. Biol. 11, 662-669 (2007).
    • (2007) Curr. Opin. Chem. Biol , vol.11 , pp. 662-669
    • Kröger, N.1
  • 22
    • 0033864184 scopus 로고    scopus 로고
    • Intracellular cyanobacterial symbionts in the marine diatom Climacodium frauenfeldianum (Bacillariophyceae)
    • Carpenter, E. J. & Janson, S. Intracellular cyanobacterial symbionts in the marine diatom Climacodium frauenfeldianum (Bacillariophyceae). J. Phycol. 36, 540-544 (2000).
    • (2000) J. Phycol , vol.36 , pp. 540-544
    • Carpenter, E.J.1    Janson, S.2
  • 23
    • 0037327222 scopus 로고    scopus 로고
    • Schmid, A.-M. M. Endobacteria in the diatom Pinnularia (Bacillariophyceae). I. Scattered ct-nucleoids explained: DAPI-DNA complexes stem from exoplastidial bacteria boring into the chloroplasts. J. Phycol. 39, 122-138 (2003).
    • Schmid, A.-M. M. Endobacteria in the diatom Pinnularia (Bacillariophyceae). I. "Scattered ct-nucleoids" explained: DAPI-DNA complexes stem from exoplastidial bacteria boring into the chloroplasts. J. Phycol. 39, 122-138 (2003).
  • 24
    • 0033955677 scopus 로고    scopus 로고
    • New perspectives on nitrogen-fixing microorganisms in tropical and subtropical oceans
    • Zehr, J. P., Carpenter, E. J. & Villareal, T. A. New perspectives on nitrogen-fixing microorganisms in tropical and subtropical oceans. Trends Microbiol. 8, 68-73 (2000).
    • (2000) Trends Microbiol , vol.8 , pp. 68-73
    • Zehr, J.P.1    Carpenter, E.J.2    Villareal, T.A.3
  • 25
    • 37649013299 scopus 로고    scopus 로고
    • AUREOCHROME, a photoreceptor required for photomorphogenesis in stramenopiles
    • Takahashi, F. et al. AUREOCHROME, a photoreceptor required for photomorphogenesis in stramenopiles. Proc. Natl Acad. Sci. USA 104, 19625-19630 (2007).
    • (2007) Proc. Natl Acad. Sci. USA , vol.104 , pp. 19625-19630
    • Takahashi, F.1
  • 27
    • 34548278927 scopus 로고    scopus 로고
    • Blue-light-activated histidine kinases: Two-component sensors in bacteria
    • Swartz, T. E. et al. Blue-light-activated histidine kinases: two-component sensors in bacteria. Science 317, 1090-1093 (2007).
    • (2007) Science , vol.317 , pp. 1090-1093
    • Swartz, T.E.1
  • 28
    • 35348896591 scopus 로고    scopus 로고
    • The Chlamydomonas genome reveals the evolution of key animal and plant functions
    • Merchant, S. S. et al. The Chlamydomonas genome reveals the evolution of key animal and plant functions. Science 318, 245-250 (2007).
    • (2007) Science , vol.318 , pp. 245-250
    • Merchant, S.S.1
  • 29
    • 49249088143 scopus 로고    scopus 로고
    • Silica biomineralization in diatoms: The model organism Thalassiosira pseudonana
    • Sumper, M. & Brunner, E. Silica biomineralization in diatoms: the model organism Thalassiosira pseudonana. ChemBioChem 9, 1187-1194 (2008).
    • (2008) ChemBioChem , vol.9 , pp. 1187-1194
    • Sumper, M.1    Brunner, E.2
  • 30
    • 33646471390 scopus 로고    scopus 로고
    • An ecological and evolutionary context for integrated nitrogen metabolism and related signaling pathways in marine diatoms
    • Allen, A. E., Vardi, A. & Bowler, C. An ecological and evolutionary context for integrated nitrogen metabolism and related signaling pathways in marine diatoms. Curr. Opin. Plant Biol. 9, 264-273 (2006).
    • (2006) Curr. Opin. Plant Biol , vol.9 , pp. 264-273
    • Allen, A.E.1    Vardi, A.2    Bowler, C.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.