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Volumn 16, Issue 1, 2015, Pages

Expression of multiple horizontally acquired genes is a hallmark of both vertebrate and invertebrate genomes

Author keywords

[No Author keywords available]

Indexed keywords

CYSTEINE SYNTHASE; EPIDIDYMAL SECRETORY PROTEIN; GLUTATHIONE PEROXIDASE; HYALURONIC ACID; TREHALOSE;

EID: 84930632893     PISSN: 14747596     EISSN: 1474760X     Source Type: Journal    
DOI: 10.1186/s13059-015-0607-3     Document Type: Article
Times cited : (206)

References (52)
  • 1
    • 84875273263 scopus 로고    scopus 로고
    • Horizontal gene transfer and the evolution of bacterial and archaeal population structure
    • Polz MF, Alm EJ, Hanage WP. Horizontal gene transfer and the evolution of bacterial and archaeal population structure. Trends Genet. 2013;29:170-5.
    • (2013) Trends Genet , vol.29 , pp. 170-175
    • Polz, M.F.1    Alm, E.J.2    Hanage, W.P.3
  • 2
    • 48249151749 scopus 로고    scopus 로고
    • Modular networks and cumulative impact of lateral transfer in prokaryote genome evolution
    • Dagan T, Artzy-Randrup Y, Martin W. Modular networks and cumulative impact of lateral transfer in prokaryote genome evolution. Proc Natl Acad Sci USA. 2008;105:10039-44.
    • (2008) Proc Natl Acad Sci USA , vol.105 , pp. 10039-10044
    • Dagan, T.1    Artzy-Randrup, Y.2    Martin, W.3
  • 3
    • 0038576862 scopus 로고    scopus 로고
    • Horizontally transferred genes in plant parasitic nematodes: a high-throughput genomic approach
    • Scholl EH, Thorne JL, McCarter JP, Bird DM. Horizontally transferred genes in plant parasitic nematodes: a high-throughput genomic approach. Genome Biol. 2003;4:R39.
    • (2003) Genome Biol , vol.4
    • Scholl, E.H.1    Thorne, J.L.2    McCarter, J.P.3    Bird, D.M.4
  • 4
    • 47649104484 scopus 로고    scopus 로고
    • Horizontal gene transfer in eukaryotic evolution
    • Keeling PJ, Palmer JD. Horizontal gene transfer in eukaryotic evolution. Nat Rev Genet. 2008;9:605-18.
    • (2008) Nat Rev Genet , vol.9 , pp. 605-618
    • Keeling, P.J.1    Palmer, J.D.2
  • 5
    • 79953063688 scopus 로고    scopus 로고
    • Horizontal gene transfer between bacteria and animals
    • Dunning Hotopp JC. Horizontal gene transfer between bacteria and animals. Trends Genet. 2011;27:157-63.
    • (2011) Trends Genet , vol.27 , pp. 157-163
    • Dunning Hotopp, J.C.1
  • 6
    • 84870200615 scopus 로고    scopus 로고
    • Evolutionary implications of horizontal gene transfer
    • Syvanen M. Evolutionary implications of horizontal gene transfer. Annu Rev Genet. 2012;46:341-58.
    • (2012) Annu Rev Genet , vol.46 , pp. 341-358
    • Syvanen, M.1
  • 7
    • 84891859970 scopus 로고    scopus 로고
    • Horizontal gene transfer in the acquisition of novel traits by metazoans
    • Boto L. Horizontal gene transfer in the acquisition of novel traits by metazoans. Proc Roy Soc B, Biol Sci. 2014;281:20132450.
    • (2014) Proc Roy Soc B, Biol Sci , vol.281 , pp. 20132450
    • Boto, L.1
  • 8
    • 77951831492 scopus 로고    scopus 로고
    • Lateral transfer of genes from fungi underlies carotenoid production in aphids
    • Moran NA, Jarvik T. Lateral transfer of genes from fungi underlies carotenoid production in aphids. Science. 2010;328:624-7.
    • (2010) Science , vol.328 , pp. 624-627
    • Moran, N.A.1    Jarvik, T.2
  • 9
    • 84899644845 scopus 로고    scopus 로고
    • A gene horizontally transferred from bacteria protects arthropods from host plant cyanide poisoning
    • Wybouw N, Dermauw W, Tirry L, Stevens C, Grbić M, Feyereisen R, et al. A gene horizontally transferred from bacteria protects arthropods from host plant cyanide poisoning. eLife. 2014;3:e02365.
    • (2014) eLife , vol.3
    • Wybouw, N.1    Dermauw, W.2    Tirry, L.3    Stevens, C.4    Grbić, M.5    Feyereisen, R.6
  • 11
    • 78651315449 scopus 로고    scopus 로고
    • Foreign genes and novel hydrophilic protein genes participate in the desiccation response of the bdelloid rotifer Adineta ricciae
    • Boschetti C, Pouchkina-Stantcheva N, Hoffmann P, Tunnacliffe A. Foreign genes and novel hydrophilic protein genes participate in the desiccation response of the bdelloid rotifer Adineta ricciae. J Exp Biol. 2011;214:59-68.
    • (2011) J Exp Biol , vol.214 , pp. 59-68
    • Boschetti, C.1    Pouchkina-Stantcheva, N.2    Hoffmann, P.3    Tunnacliffe, A.4
  • 12
    • 84870723336 scopus 로고    scopus 로고
    • Biochemical diversification through foreign gene expression in bdelloid rotifers
    • Boschetti C, Carr A, Crisp A, Eyres I, Wang-Koh Y, Lubzens E, et al. Biochemical diversification through foreign gene expression in bdelloid rotifers. PLoS Genet. 2012;8:e1003035.
    • (2012) PLoS Genet , vol.8
    • Boschetti, C.1    Carr, A.2    Crisp, A.3    Eyres, I.4    Wang-Koh, Y.5    Lubzens, E.6
  • 13
    • 84882826169 scopus 로고    scopus 로고
    • Genomic evidence for ameiotic evolution in the bdelloid rotifer Adineta vaga
    • Flot JF, Hespeels B, Li X, Noel B, Arkhipova I, Danchin EG, et al. Genomic evidence for ameiotic evolution in the bdelloid rotifer Adineta vaga. Nature. 2013;500:453-7.
    • (2013) Nature , vol.500 , pp. 453-457
    • Flot, J.F.1    Hespeels, B.2    Li, X.3    Noel, B.4    Arkhipova, I.5    Danchin, E.G.6
  • 14
    • 0030049354 scopus 로고    scopus 로고
    • Radioresistance of Deinococcus radiodurans: functions necessary to survive ionizing radiation are also necessary to survive prolonged desiccation
    • Mattimore V, Battista JR. Radioresistance of Deinococcus radiodurans: functions necessary to survive ionizing radiation are also necessary to survive prolonged desiccation. Journal of Bacteriology. 1996;178:633-7.
    • (1996) Journal of Bacteriology , vol.178 , pp. 633-637
    • Mattimore, V.1    Battista, J.R.2
  • 18
    • 0037195120 scopus 로고    scopus 로고
    • Genome fragment of Wolbachia endosymbiont transferred to X chromosome of host insect
    • Kondo N, Nikoh N, Ijichi N, Shimada M, Fukatsu T. Genome fragment of Wolbachia endosymbiont transferred to X chromosome of host insect. Proc Natl Acad Sci USA. 2002;99:14280-5.
    • (2002) Proc Natl Acad Sci USA , vol.99 , pp. 14280-14285
    • Kondo, N.1    Nikoh, N.2    Ijichi, N.3    Shimada, M.4    Fukatsu, T.5
  • 20
    • 0035827328 scopus 로고    scopus 로고
    • Microbial genes in the human genome: lateral transfer or gene loss?
    • Salzberg SL, White O, Peterson J, Eisen JA. Microbial genes in the human genome: lateral transfer or gene loss? Science. 2001;292:1903-6.
    • (2001) Science. , vol.292 , pp. 1903-1906
    • Salzberg, S.L.1    White, O.2    Peterson, J.3    Eisen, J.A.4
  • 21
    • 0035927649 scopus 로고    scopus 로고
    • Phylogenetic analyses do not support horizontal gene transfers from bacteria to vertebrates
    • Stanhope MJ, Lupas A, Italia MJ, Koretke KK, Volker C, Brown JR. Phylogenetic analyses do not support horizontal gene transfers from bacteria to vertebrates. Nature. 2001;411:940-4.
    • (2001) Nature , vol.411 , pp. 940-944
    • Stanhope, M.J.1    Lupas, A.2    Italia, M.J.3    Koretke, K.K.4    Volker, C.5    Brown, J.R.6
  • 22
    • 0037383272 scopus 로고    scopus 로고
    • Much ado about bacteria-to-vertebrate lateral gene transfer
    • Genereux DP, Logsdon JM. Much ado about bacteria-to-vertebrate lateral gene transfer. Trends Genet. 2003;19:191-5.
    • (2003) Trends Genet , vol.19 , pp. 191-195
    • Genereux, D.P.1    Logsdon, J.M.2
  • 24
    • 84870601270 scopus 로고    scopus 로고
    • Contribution of lateral gene transfers to the genome composition and parasitic ability of root-knot nematodes
    • Paganini J, Campan-Fournier A, Da Rocha M, Gouret P, Pontarotti P, Wajnberg E, et al. Contribution of lateral gene transfers to the genome composition and parasitic ability of root-knot nematodes. PLoS One. 2012;7:e50875.
    • (2012) PLoS One , vol.7
    • Paganini, J.1    Campan-Fournier, A.2    Da Rocha, M.3    Gouret, P.4    Pontarotti, P.5    Wajnberg, E.6
  • 25
    • 0035843908 scopus 로고    scopus 로고
    • Genes lost and genes found: evolution of bacterial pathogenesis and symbiosis
    • Ochman H, Moran NA. Genes lost and genes found: evolution of bacterial pathogenesis and symbiosis. Science. 2001;292:1096-9.
    • (2001) Science , vol.292 , pp. 1096-1099
    • Ochman, H.1    Moran, N.A.2
  • 27
    • 42249083837 scopus 로고    scopus 로고
    • The obesity gene, FTO, is of ancient origin, upregulated during food deprivation and expressed in neurons of feedingrelated nuclei of the brain
    • Fredriksson R, Hägglund M, Olszewski PK, Stephansson O, Jacobsson JA, Olszewska AM, et al. The obesity gene, FTO, is of ancient origin, upregulated during food deprivation and expressed in neurons of feedingrelated nuclei of the brain. Endocrinol. 2008;149:2062-71.
    • (2008) Endocrinol , vol.149 , pp. 2062-2071
    • Fredriksson, R.1    Hägglund, M.2    Olszewski, P.K.3    Stephansson, O.4    Jacobsson, J.A.5    Olszewska, A.M.6
  • 28
    • 38649130998 scopus 로고    scopus 로고
    • The FTO gene, implicated in human obesity, is found only in vertebrates and marine algae
    • Robbens S, Rouzé P, Cock JM, Spring J, Worden AZ, Van de Peer Y. The FTO gene, implicated in human obesity, is found only in vertebrates and marine algae. J Mol Evol. 2008;66:80-4.
    • (2008) J Mol Evol , vol.66 , pp. 80-84
    • Robbens, S.1    Rouzé, P.2    Cock, J.M.3    Spring, J.4    Worden, A.Z.5    Van de Peer, Y.6
  • 29
    • 78549243023 scopus 로고    scopus 로고
    • Family 6 glycosyltransferases in vertebrates and bacteria: inactivation and horizontal gene transfer may enhance mutualism between vertebrates and bacteria
    • Brew K, Tumbale P, Acharya KR. Family 6 glycosyltransferases in vertebrates and bacteria: inactivation and horizontal gene transfer may enhance mutualism between vertebrates and bacteria. J Biol Chem. 2010;285:37121-7.
    • (2010) J Biol Chem , vol.285 , pp. 37121-37127
    • Brew, K.1    Tumbale, P.2    Acharya, K.R.3
  • 30
    • 0037433041 scopus 로고    scopus 로고
    • SimiTri-visualizing similarity relationships for groups of sequences
    • Parkinson J, Blaxter M. SimiTri-visualizing similarity relationships for groups of sequences. Bioinformatics. 2003;19:390-539.
    • (2003) Bioinformatics , vol.19 , pp. 390-539
    • Parkinson, J.1    Blaxter, M.2
  • 31
    • 0033616714 scopus 로고    scopus 로고
    • Horizontal gene transfer among genomes: the complexity hypothesis
    • Jain R, Rivera MC, Lake JA. Horizontal gene transfer among genomes: the complexity hypothesis. Proc Natl Acad Sci USA. 1999;96:3801-6.
    • (1999) Proc Natl Acad Sci USA , vol.96 , pp. 3801-3806
    • Jain, R.1    Rivera, M.C.2    Lake, J.A.3
  • 32
    • 79952840493 scopus 로고    scopus 로고
    • The complexity hypothesis revisited: connectivity rather than function constitutes a barrier to horizontal gene transfer
    • Cohen O, Gophna U, Pupko T. The complexity hypothesis revisited: connectivity rather than function constitutes a barrier to horizontal gene transfer. Mol Biol Evol. 2011;28:1481-9.
    • (2011) Mol Biol Evol , vol.28 , pp. 1481-1489
    • Cohen, O.1    Gophna, U.2    Pupko, T.3
  • 33
    • 79961241631 scopus 로고    scopus 로고
    • Trehalose renders the dauer larva of Caenorhabditis elegans resistant to extreme desiccation
    • Erkut C, Penkov S, Khesbak H, Vorkel D, Verbavatz J-M, Fahmy K, et al. Trehalose renders the dauer larva of Caenorhabditis elegans resistant to extreme desiccation. Curr Biol. 2011;21:1331-6.
    • (2011) Curr Biol , vol.21 , pp. 1331-1336
    • Erkut, C.1    Penkov, S.2    Khesbak, H.3    Vorkel, D.4    Verbavatz, J-M.5    Fahmy, K.6
  • 34
  • 37
    • 84935842138 scopus 로고    scopus 로고
    • Flybase. [http://flybase.org/]
  • 39
    • 84935861607 scopus 로고    scopus 로고
    • Flymine [http://www.flymine.org/]
  • 41
    • 84935839421 scopus 로고    scopus 로고
    • Wormbase [http://www.wormbase.org/]
  • 43
    • 84935886579 scopus 로고    scopus 로고
    • Ensembl [http://www.ensembl.org]
  • 45
    • 84935862223 scopus 로고    scopus 로고
    • OrthoMCL [http://orthomcl.org/orthomcl/]
  • 46
    • 33644787447 scopus 로고    scopus 로고
    • OrthoMCL-DB: querying a comprehensive multi-species collection of ortholog groups
    • Chen F, Mackey AJ, Stoeckert Jr CJ, Roos DS. OrthoMCL-DB: querying a comprehensive multi-species collection of ortholog groups. Nucl Acids Res. 2006;34:D363-8.
    • (2006) Nucl Acids Res , vol.34 , pp. D363-D368
    • Chen, F.1    Mackey, A.J.2    Stoeckert Jr, C.J.3    Roos, D.S.4
  • 48
    • 0036529479 scopus 로고    scopus 로고
    • An efficient algorithm for largescale detection of protein families
    • Enright AJ, Van Dongen S, Ouzounis CA. An efficient algorithm for largescale detection of protein families. Nucl Ac Res. 2002;30:1575-84.
    • (2002) Nucl Ac Res , vol.30 , pp. 1575-1584
    • Enright, A.J.1    Van Dongen, S.2    Ouzounis, C.A.3
  • 49
    • 84935874516 scopus 로고    scopus 로고
    • Tree files. [http://dx.doi.org/10.6084/m9.figshare.1304479]
  • 50
    • 84935924126 scopus 로고    scopus 로고
    • NCBI [http://www.ncbi.nlm.nih.gov/]


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.