The pre-endosymbiont hypothesis: A new perspective on the origin and evolution of mitochondria

Cold Spring Harbor Perspectives in Biology

Volumn 6, Issue 3, 2014, Pages

  Gray, Michael W ^a  

^a DALHOUSIE UNIVERSITY   (Canada)

Author keywords

[No Author keywords available]

Indexed keywords

MITOCHONDRIAL DNA;

ALPHAPROTEOBACTERIA; ARTICLE; BACTERIAL GENOME; CHEMISTRY; EVOLUTION; GENETICS; MITOCHONDRIAL GENOME; MITOCHONDRION; PHYLOGENY; PHYSIOLOGY; SYMBIOSIS; ULTRASTRUCTURE;

ALPHAPROTEOBACTERIA; BIOLOGICAL EVOLUTION; DNA, MITOCHONDRIAL; GENOME, BACTERIAL; GENOME, MITOCHONDRIAL; MITOCHONDRIA; PHYLOGENY; SYMBIOSIS;

EID: 84897604624     PISSN: None     EISSN: 19430264     Source Type: Journal    
DOI: 10.1101/cshperspect.a016097     Document Type: Article

References (53)

1. Adams KL, Palmer JD. 2003. Evolution of mitochondrial gene content: Gene loss and transfer to the nucleus. Mol Phylogenet Evol 29: 380-395
2. Andersson SGE, Kurland CG. 1999. Origins of mitochondria and hydrogenosomes. Curr Opin Microbiol 2: 535-541
3. Brindefalk B, Ettema TJG, Viklund J, Thollesson M, Andersson SGE. 2011. A phylometagenomic exploration of oceanic Alphaproteobacteria reveals mitochondrial relatives unrelated to the SAR11 clade. PLoS ONE 6: e24457
4. Burger G, Gray MW, Lang BF. 2003. Mitochondrial genomes: Anything goes. Trends Genet 19: 709-716
5. Burger G, Gray MW, Forget L, Lang BF. 2013. Strikingly bacteria-like and gene-rich mitochondrial genomes throughout jakobid protists. Genome Biol Evol 5: 418-438
6. Cardol P. 2011. Mitochondrial NADH:ubiquinone oxidoreductase (complex I) in eukaryotes: A highly conserved subunit composition highlighted by mining of protein databases. Biochim Biophys Acta 1807: 1390-1397
7. Castresana J, Lübben M, Saraste M, Higgins DG. 1994. Evolution of cytochrome oxidase, an enzyme older than atmospheric oxygen. EMBO J 13: 2516-2525
8. Cavalier-Smith T. 1987. Eukaryotes with no mitochondria. Nature 326: 332-333
9. Cavalier-Smith T. 1989. Archaebacteria and archezoa. Nature 339: 100-101
10. Doolittle WF. 1980. Revolutionary concepts in evolutionary biology. Trends Biochem Sci 5: 146-149
11. Forterre P. 2011. A new fusion hypothesis for the origin of Eukarya: Better than previous ones, but probably also wrong. Res Microbiol 162: 77-91
12. Gabaldón T. 2013. A metabolic scenario for the evolutionary origin of peroxisomes from the endomembrane system. Cell Mol Life Sci doi: 10.1007/s00018-013-1424-z
13. Gabaldón T, Huynen MA. 2003. Reconstruction of the proto-mitochondrial metabolism. Science 302: 609
14. Gabaldón T, Huynen MA. 2004. Shaping the mitochondrial proteome. FEBS Lett 1659: 212-220
15. Gabaldón T, Huynen MA. 2007. From endosymbiont to host-controlled organelle: The hijacking of mitochondrial protein synthesis and metabolism. PLoS Comput Biol 3: e219
16. Georgiades K, Madoui M-A, Le P, Robert C, Raoult D. 2011. Phylogenomic analysis of Odyssella thessalonicensis forti- fies the common origin of Rickettsiales, Pelagibacter ubique and Reclimonas americana mitochondrion. PLoS ONE 6: e24857
17. Gray MW. 1992. The endosymbiont hypothesis revisited. Int Rev Cytol 141: 233-357
18. Gray MW. 2003. Diversity and evolution of mitochondrial RNA editing systems. IUBMB Life 55: 227-233
19. Gray MW. 2012. Mitochondrial evolution. Cold Spring Harb Perspect Biol 4: a011403
20. Gray MW, Doolittle WF. 1982. Has the endosymbiont hypothesis been proven? Microbiol Rev 46: 1-42
21. Gray MW, Lang BF, Cedergren R, Golding GB, Lemieux C, Sankoff D, Turmel M, Brossard N, Delage F, Littlejohn TG, et al. 1998. Genome structure and gene content in protist mitochondrial DNAs. Nucleic Acids Res 26: 865-878
22. Gray MW, Burger G, Lang BF. 1999. Mitochondrial evolution. Science 283: 1476-1481
23. Gray MW, Burger G, Lang BF. 2001. The origin and early evolution of mitochondria. Genome Biol 2: reviews1018-1018.5
24. Hampl V, Hug L, Leigh JW, Dacks JB, Lang BF, Simpson AGB, Roger AJ. 2009. Phylogenomic analyses support the monophyly of Excavata and resolve relationships among eukaryotic "supergroups." Proc Natl Acad Sci 106: 3859-3864
25. Harish A, Tunlid A, Kurland CG. 2013. Rooted phylogeny of the three superkingdoms. Biochimie 95: 1593-1604
26. Hjort K, Goldberg AV, Tsaousis AD, Hirt RP, Embley TM. 2010. Diversity and reductive evolution of mitochondria among microbial eukaryotes. Philos Trans R Soc Lond B Biol Sci 365: 713-727
27. Huynen MA, Duarte I, Szklarczyk R. 2013. Loss, replacement and gain of proteins at the origin of the mitochondria. Biochim Biophys Acta 1827: 224-231
28. Karlberg O, Canbäck B, Kurland CG, Andersson SGE. 2000. The dual origin of the yeast mitochondrial proteome. Yeast 17: 170-187
29. Keeling PJ. 2013a. The number, speed, and impact of plastid endosymbioses in eukaryotic evolution. Annu Rev Plant Biol 64: 583-607
30. Keeling P. 2013b. The impact of history on our perception of evolutionary events: Endosymbiosis and the origin of eukaryotic complexity. Cold Spring Harb Perspect Biol 6: a016196
31. Kiethega G, Yan Y, Turcotte M, Burger G. 2013. RNA-level unscrambling of fragmented genes in Diplonema mitochondria. RNA Biol 10: 301-313
32. Koonin EV. 2010. The origin and early evolution of eukaryotes in the light of phylogenomics. Genome Biol 11: 209
33. Kurland CG, Andersson SGE. 2000. Origin and evolution of the mitochondrial proteome. Microbiol Mol Biol Rev 64: 786-820
34. Lane N, Martin W. 2010. The energetics of genome complexity. Nature 467: 929-934
35. Lang BF, Burger G. 2012. Mitochondrial and eukaryotic origins: A critical review. In Mitochondrial genome evolution (ed.Maréchal-Drouard L), Advances in Botanical Research, Vol. 63, pp. 1-20. Elsevier, Amsterdam
36. Lang BF, Burger G, O'Kelly CJ, Cedergren R, Golding GB, Lemieux C, Sankoff D, Turmel M, Gray MW. 1997. An ancestral mitochondrial DNA resembling a eubacterial genome in miniature. Nature 387: 493-497
37. Marciano-Cabral F. 2004. Introductory remarks: Bacterial endosymbionts or pathogens of free-living amebae. J Eukaryot Microbiol 51: 497-501
38. Margulis L. 1970. Origin of eukaryotic cells. Yale University Press, New Haven, CT
39. Martin W, Müller M. 1998. The hydrogen hypothesis for the first eukaryote. Nature 392: 37-41
40. Martin W, Hoffmeister M, Rotte C, Henze K. 2001. An overview of endosymbiotic models for the origins of eukaryotes, their ATP-producing organelles (mitochondria and hydrogenosomes), and their heterotrophic lifestyle. Biol Chem 382: 1521-1539
41. Müller M, Mentel M, van Hellemond JJ, Henze K, Woehle C, Gould SB, Yu RY, van der Giezen M, Tielens AGM, Martin WF. 2012. Biochemistry and evolution of anaerobic energy metabolism in eukaryotes. Microbiol Mol Biol Rev 76: 444-495
42. Pisani D, Cotton JA, McInerney JO. 2007. Supertrees disentangle the chimerical origin of eukaryotic genomes. Mol Biol Evol 24: 1752-1760
43. Raff RA, Mahler HR. 1972. The non symbiotic origin of mitochondria. Science 177: 575-582
44. Rodríguez-Ezpeleta N, Embley TM. 2012. The SAR11 group of a-proteobacteria is not related to the origin of mitochondria. PLoS ONE 7: e30520
45. Schnarrenberger C, Martin W. 2002. Evolution of the enzymes of the citric acid cycle and the glyoxylate cycle of higher plants. A case study of endosymbiotic gene transfer. Eur J Biochem 269: 868-883
46. Shiflett AM, Johnson PJ. 2010. Mitochondrion-related organelles in eukaryotic protists. Annu Rev Microbiol 64: 409-429
47. Shutt TE, Gray MW. 2006. Bacteriophage origins of mitochondrial replication and transcription proteins. Trends Genet 22: 90-95
48. Szklarczyk R, Huynen MA. 2010. Mosaic origin of the mitochondrial proteome. Proteomics 10: 4012-4024
49. Taylor FJR. 1987. An overview of the status of evolutionary cell symbiosis theories. In Endocytobiology III (ed. Lee JJ, Fredrick JF), Vol. 503, pp. 1-16. The New York Academy of Sciences, New York
50. Thiegart T, Landan G, Schenk M, Dagan T, Martin WF. 2012. An evolutionary network of genes present in the eukaryote common ancestor polls genomes on eukaryotic and mitochondrial origin. Genome Biol Evol 4: 466-485
51. Thrash JC, Boyd A, Huggett MJ, Grote J, Carini P, Yoder RJ, Robbertse B, Spatafora JW, Rappe MS, Giovannoni SJ 2011. Phylogenomic evidence for a common ancestor of mitochondria and the SAR11 clade. Sci Rep 1: 13
52. Viklund J, Ettema TJG, Andersson SGE. 2012. Independent genome reduction and phylogenetic reclassification of the oceanic SAR11 clade. Mol Biol Evol 29: 599-615
53. Vlček C, Marande W, Teijeiro S, Lukeš J, Burger G. 2011 Systematically fragmented genes in a multipartite mitochondrial genome. Nucleic Acids Res 39: 979-988