-
1
-
-
36649021589
-
Mucosa-associated bacterial diversity in relation to human terminal ileum and colonic biopsy samples
-
Ahmed S, Macfarlane GT, Fite A, McBain AJ, Gilbert P, Macfarlane S. 2007. Mucosa-associated bacterial diversity in relation to human terminal ileum and colonic biopsy samples. Appl. Environ Microbiol. 73:7435-7442.
-
(2007)
Appl. Environ Microbiol.
, vol.73
, pp. 7435-7442
-
-
Ahmed, S.1
Macfarlane, G.T.2
Fite, A.3
McBain, A.J.4
Gilbert, P.5
Macfarlane, S.6
-
2
-
-
0028946084
-
Phylogenetic identification and in situ detection of individual microbial cells without cultivation
-
Amann RI, Ludwig W, Schleifer KH. 1995. Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiol. Rev. 59:143-169.
-
(1995)
Microbiol. Rev.
, vol.59
, pp. 143-169
-
-
Amann, R.I.1
Ludwig, W.2
Schleifer, K.H.3
-
3
-
-
50949131523
-
Comparative analysis of human gut microbiota by barcoded pyrosequencing
-
Andersson AF, Lindberg M, Jakobsson H, Backhed F, Nyren P, Engstrand L. 2008. Comparative analysis of human gut microbiota by barcoded pyrosequencing. PloS One 3:e2836.
-
(2008)
PloS One
, vol.3
-
-
Andersson, A.F.1
Lindberg, M.2
Jakobsson, H.3
Backhed, F.4
Nyren, P.5
Engstrand, L.6
-
4
-
-
29144504177
-
At least 1 in 20 16S rRNA sequence records currently held in public repositories is estimated to contain substantial anomalies Appl
-
Ashelford KE, Chuzhanova NA, Fry JC, Jones AJ, Weightman AJ. 2005. At least 1 in 20 16S rRNA sequence records currently held in public repositories is estimated to contain substantial anomalies Appl. Environ. Microbiol. 71:7724-7736.
-
(2005)
Environ. Microbiol.
, vol.71
, pp. 7724-7736
-
-
Ashelford, K.E.1
Chuzhanova, N.A.2
Fry, J.C.3
Jones, A.J.4
Weightman, A.J.5
-
5
-
-
15544369658
-
Host-bacterial mutualism in the human intestine
-
Backhed F, Ley RE, Sonnenburg JL, Peterson DA, Gordon JI. 2005. Host-bacterial mutualism in the human intestine. Science 307:1915-1920.
-
(2005)
Science
, vol.307
, pp. 1915-1920
-
-
Backhed, F.1
Ley, R.E.2
Sonnenburg, J.L.3
Peterson, D.A.4
Gordon, J.I.5
-
7
-
-
0031827865
-
Development of specific nested oligonucleotide PCR primers for the Streptococcus iniae 16S-23S ribosomal DNA intergenic spacer
-
Berridge BR, Fuller JD, de Azavedo J, Low DE, Bercovier H, Frelier PF. 1998. Development of specific nested oligonucleotide PCR primers for the Streptococcus iniae 16S-23S ribosomal DNA intergenic spacer. J. Clin. Microbiol. 36:2778-2781.
-
(1998)
J. Clin. Microbiol.
, vol.36
, pp. 2778-2781
-
-
Berridge, B.R.1
Fuller, J.D.2
de Azavedo, J.3
Low, D.E.4
Bercovier, H.5
Frelier, P.F.6
-
8
-
-
31444449652
-
Molecular analysis of the bacterial microbiota in the human stomach Proc
-
Bik EM, Eckburg PB, Gill SR, Nelson KE, Purdom EA, et al. 2006 Molecular analysis of the bacterial microbiota in the human stomach Proc. Natl. Acad. Sci. USA 103:732-737.
-
(2006)
Natl. Acad. Sci. USA
, vol.103
, pp. 732-737
-
-
Bik, E.M.1
Eckburg, P.B.2
Gill, S.R.3
Nelson, K.E.4
Purdom, E.A.5
-
9
-
-
77956056719
-
Analysis of Diversity and Function of the Human Small Intestinal Microbiota
-
Wageningen University, Wageningen, The Netherlands
-
Booijink CC. 2009. Analysis of Diversity and Function of the Human Small Intestinal Microbiota. Wageningen University, Wageningen, The Netherlands.
-
(2009)
-
-
Booijink, C.C.1
-
10
-
-
34547507259
-
Microbial communities in the human small intestine: Coupling diversity to metagenomics
-
Booijink CC, Zoetendal EG, Kleerebezem M, de Vos WM. 2007 Microbial communities in the human small intestine: Coupling diversity to metagenomics. Future Microbiol. 2:285-295.
-
(2007)
Future Microbiol
, vol.2
, pp. 285-295
-
-
Booijink, C.C.1
Zoetendal, E.G.2
Kleerebezem, M.3
de Vos, W.M.4
-
11
-
-
77956648022
-
High temporal and inter-individual variation detected in the human ileal microbiota
-
Booijink CC, El-Aidy SF, Rajilíc-Stojanovíc M, Heilig HG, Troost FJ, et al. 2010. High temporal and inter-individual variation detected in the human ileal microbiota. Environ Microbiol. 12:3213-3227.
-
(2010)
Environ Microbiol
, vol.12
, pp. 3213-3227
-
-
Booijink, C.C.1
El-Aidy, S.F.2
Rajilíc-Stojanovíc, M.3
Heilig, H.G.4
Troost, F.J.5
-
12
-
-
0141891348
-
Metagenomic analyses of an uncultured viral community from human feces
-
Breitbart M, Hewson I, Felts B, Mahaffy JM, Nulton J, et al. 2003. Metagenomic analyses of an uncultured viral community from human feces. J. Bacteriol. 185:6220-6223.
-
(2003)
J. Bacteriol.
, vol.185
, pp. 6220-6223
-
-
Breitbart, M.1
Hewson, I.2
Felts, B.3
Mahaffy, J.M.4
Nulton, J.5
-
13
-
-
33846131262
-
Use of 16S rRNA and rpoB genes as molecular markers for microbial ecology studies
-
Case RJ, Boucher Y, Dahllof I, Holmstrom C, Doolittle WF, Kjelleberg S. 2007. Use of 16S rRNA and rpoB genes as molecular markers for microbial ecology studies. Appl. Environ. Microbiol 73:278-288.
-
(2007)
Appl. Environ. Microbiol
, vol.73
, pp. 278-288
-
-
Case, R.J.1
Boucher, Y.2
Dahllof, I.3
Holmstrom, C.4
Doolittle, W.F.5
Kjelleberg, S.6
-
14
-
-
55449131166
-
Bioinformatics for whole-genome shotgun sequencing of microbial communities
-
Chen K, Pachter L. 2005. Bioinformatics for whole-genome shotgun sequencing of microbial communities. PLoS Comput. Biol. 1:106-112.
-
(2005)
PLoS Comput. Biol.
, vol.1
, pp. 106-112
-
-
Chen, K.1
Pachter, L.2
-
15
-
-
69249109724
-
Comparative analysis of pyrosequencing and a phylogenetic microarray for exploring microbial community structures in the human distal intestine
-
e6669
-
Claesson MJ, O'Sullivan O, Wang Q, Nikkila J, Marchesi JR, et al. 2009. Comparative analysis of pyrosequencing and a phylogenetic microarray for exploring microbial community structures in the human distal intestine. PloS One 4:e6669.
-
(2009)
PloS One
, vol.4
-
-
Claesson, M.J.1
O'Sullivan, O.2
Wang, Q.3
Nikkila, J.4
Marchesi, J.R.5
-
16
-
-
58849107237
-
Transcriptome content and dynamics at single-nucleotide resolution
-
Cloonan N, Grimmond SM. 2008. Transcriptome content and dynamics at single-nucleotide resolution. Genome biology 9:234.
-
(2008)
Genome biology
, vol.9
, pp. 234
-
-
Cloonan, N.1
Grimmond, S.M.2
-
17
-
-
0028126829
-
The phylogeny of the genus Clostridium: proposal of five new genera and eleven new species combinations Int
-
Collins MD, Lawson PA, Willems A, Cordoba JJ, Fernandez-Garayzabal J, et al. 1994. The phylogeny of the genus Clostridium: proposal of five new genera and eleven new species combinations Int. J. Syst. Bacteriol. 44:812-826.
-
(1994)
J. Syst. Bacteriol.
, vol.44
, pp. 812-826
-
-
Collins, M.D.1
Lawson, P.A.2
Willems, A.3
Cordoba, J.J.4
Fernandez-Garayzabal, J.5
-
18
-
-
55749094854
-
Fast forward genetics
-
Darby AC, Hall N. 2008. Fast forward genetics. Nat. Biotechnol 26:1248-1249.
-
(2008)
Nat. Biotechnol
, vol.26
, pp. 1248-1249
-
-
Darby, A.C.1
Hall, N.2
-
19
-
-
34248159346
-
High-density universal 16S rRNA microarray analysis reveals broader diversity than typical clone library when sampling the environment
-
DeSantis TZ, Brodie EL, Moberg JP, Zubieta IX, Piceno YM, Andersen GL. 2007. High-density universal 16S rRNA microarray analysis reveals broader diversity than typical clone library when sampling the environment. Microb. Ecol. 53:371-383.
-
(2007)
Microb. Ecol.
, vol.53
, pp. 371-383
-
-
DeSantis, T.Z.1
Brodie, E.L.2
Moberg, J.P.3
Zubieta, I.X.4
Piceno, Y.M.5
Andersen, G.L.6
-
20
-
-
56849106496
-
The pervasive effects of an antibiotic on the human gut microbiota, as revealed by deep 16S rRNA sequencing
-
e280
-
Dethlefsen L, Huse S, Sogin ML, Relman DA. 2008. The pervasive effects of an antibiotic on the human gut microbiota, as revealed by deep 16S rRNA sequencing. PLoS Biol. 6:e280.
-
(2008)
PLoS Biol
, vol.6
-
-
Dethlefsen, L.1
Huse, S.2
Sogin, M.L.3
Relman, D.A.4
-
21
-
-
70349408423
-
High prevalence of Methanobrevibacter smithii and Methanosphaera stadtmanae detected in the human gut using an improved DNA detection protocol
-
e7063
-
Dridi B, Henry M, El Khechine A, Raoult D, Drancourt M. 2009 High prevalence of Methanobrevibacter smithii and Methanosphaera stadtmanae detected in the human gut using an improved DNA detection protocol. PloS One 4:e7063.
-
(2009)
PloS One
, vol.4
-
-
Dridi, B.1
Henry, M.2
El Khechine, A.3
Raoult, D.4
Drancourt, M.5
-
22
-
-
70049099845
-
Immune responses to the microbiota at the intestinal mucosal surface
-
Duerkop BA, Vaishnava S, Hooper LV. 2009. Immune responses to the microbiota at the intestinal mucosal surface. Immunity 31:368-376.
-
(2009)
Immunity
, vol.31
, pp. 368-376
-
-
Duerkop, B.A.1
Vaishnava, S.2
Hooper, L.V.3
-
23
-
-
8144224956
-
Lactate-utilizing bacteria, isolated from human feces, that produce butyrate as a major fermentation product
-
Duncan SH, Louis P, Flint HJ. 2004. Lactate-utilizing bacteria, isolated from human feces, that produce butyrate as a major fermentation product. Appl. Environ. Microbiol. 70:5810-5817.
-
(2004)
Appl. Environ. Microbiol
, vol.70
, pp. 5810-5817
-
-
Duncan, S.H.1
Louis, P.2
Flint, H.J.3
-
24
-
-
20544444045
-
Diversity of the human intestinal microbial flora
-
Eckburg PB, Bik EM, Bernstein CN, Purdom E, Dethlefsen L, et al. 2005. Diversity of the human intestinal microbial flora. Science 308:1635-8.
-
(2005)
Science
, vol.308
, pp. 1635-1638
-
-
Eckburg, P.B.1
Bik, E.M.2
Bernstein, C.N.3
Purdom, E.4
Dethlefsen, L.5
-
25
-
-
33845984917
-
Gene discovery and annotation using LCM-454 transcriptome sequencing
-
Emrich SJ, Barbazuk WB, Li L, Schnable PS. 2007. Gene discovery and annotation using LCM-454 transcriptome sequencing. Genome Res. 17:69-73.
-
(2007)
Genome Res
, vol.17
, pp. 69-73
-
-
Emrich, S.J.1
Barbazuk, W.B.2
Li, L.3
Schnable, P.S.4
-
26
-
-
69949083658
-
Allelic variation of bile salt hydrolase genes in Lactobacillus salivarius does not determine bile resistance levels
-
Fang F, Li Y, Bumann M, Raftis EJ, Casey PG, Cooney JC, et al. 2009. Allelic variation of bile salt hydrolase genes in Lactobacillus salivarius does not determine bile resistance levels. J. Bacteriol 191:5743-5757.
-
(2009)
J. Bacteriol
, vol.191
, pp. 5743-5757
-
-
Fang, F.1
Li, Y.2
Bumann, M.3
Raftis, E.J.4
Casey, P.G.5
Cooney, J.C.6
-
27
-
-
34249865095
-
Development of high-throughput phenotyping of metagenomic clones from the human gut microbiome for modulation of eukaryotic cell growth
-
Gloux K, Leclerc M, Iliozer H, L'Haridon R, Manichanh C, et al. 2007. Development of high-throughput phenotyping of metagenomic clones from the human gut microbiome for modulation of eukaryotic cell growth. Appl. Environ. Microbiol. 73:3734-3737.
-
(2007)
Appl. Environ. Microbiol.
, vol.73
, pp. 3734-3737
-
-
Gloux, K.1
Leclerc, M.2
Iliozer, H.3
L'Haridon, R.4
Manichanh, C.5
-
28
-
-
33644549184
-
Enteric flora in health and disease
-
Guarner F. 2006. Enteric flora in health and disease. Digestion 73(Suppl.) 1:5-12.
-
(2006)
Digestion
, vol.73
, Issue.1
, pp. 5-12
-
-
Guarner, F.1
-
29
-
-
67650021209
-
Microbial community profiling for human microbiome projects: Tools, techniques, and challenges
-
Hamady M, Knight R. 2009. Microbial community profiling for human microbiome projects: Tools, techniques, and challenges. Genome Res 19:1141-1152.
-
(2009)
Genome Res
, vol.19
, pp. 1141-1152
-
-
Hamady, M.1
Knight, R.2
-
30
-
-
35448976959
-
Cloning the metagenome: Culture-independent access to the diversity and functions of the uncultivated microbial world
-
Academic Press, In Wren B, Dorell N, ed
-
Handelsman J, Liles M, Mann D, Riesenfeld C, Goodman RM. 2002. Cloning the metagenome: Culture-independent access to the diversity and functions of the uncultivated microbial world. In Wren B, Dorell N, ed. Methods in Microbiology, Vol. 33. Academic Press, pp. 241-255.
-
(2002)
Methods in Microbiology
, vol.33
, pp. 241-255
-
-
Handelsman, J.1
Liles, M.2
Mann, D.3
Riesenfeld, C.4
Goodman, R.M.5
-
31
-
-
10344227692
-
Metagenomics: application of genomics to uncultured microorganisms
-
Handelsman J. 2004. Metagenomics: application of genomics to uncultured microorganisms. Microbiol. Mol. Biol. Rev. 68:669-685.
-
(2004)
Microbiol. Mol. Biol. Rev.
, vol.68
, pp. 669-685
-
-
Handelsman, J.1
-
32
-
-
70350125099
-
Human gut microbiome adopts an alternative state following small bowel transplantation
-
Hartman AL, Lough DM, Barupal DK, Fiehn O, Fishbein T, et al. 2009. Human gut microbiome adopts an alternative state following small bowel transplantation. Proc. Natl. Acad. Sci. USA 106:17187-17192.
-
(2009)
Proc. Natl. Acad. Sci. USA
, vol.106
, pp. 17187-17192
-
-
Hartman, A.L.1
Lough, D.M.2
Barupal, D.K.3
Fiehn, O.4
Fishbein, T.5
-
33
-
-
27644574002
-
Molecular analysis of jejunal, ileal, caecal and recto-sigmoidal human colonic microbiota using 16S rRNA gene libraries and terminal restriction fragment length polymorphism
-
Hayashi H, Takahashi R, Nishi T, Sakamoto M, Benno Y. 2005. Molecular analysis of jejunal, ileal, caecal and recto-sigmoidal human colonic microbiota using 16S rRNA gene libraries and terminal restriction fragment length polymorphism. J. Med. Microbiol 54:1093-1101.
-
(2005)
J. Med. Microbiol
, vol.54
, pp. 1093-1101
-
-
Hayashi, H.1
Takahashi, R.2
Nishi, T.3
Sakamoto, M.4
Benno, Y.5
-
34
-
-
0033916660
-
Screening of environmental DNA libraries for the presence of genes conferring lipolytic activity on Escherichia coli
-
Henne A, Schmitz RA, Bomeke M, Gottschalk G, Daniel R. 2000. Screening of environmental DNA libraries for the presence of genes conferring lipolytic activity on Escherichia coli. Appl. Environ Microbiol. 66:3113-6.
-
(2000)
Appl. Environ Microbiol.
, vol.66
, pp. 3113-3116
-
-
Henne, A.1
Schmitz, R.A.2
Bomeke, M.3
Gottschalk, G.4
Daniel, R.5
-
35
-
-
64749106669
-
Do symbiotic bacteria subvert host immunity ? Nat Rev
-
Hooper LV. 2009. Do symbiotic bacteria subvert host immunity ? Nat Rev. Microbiol. 7:367-374.
-
(2009)
Microbiol
, vol.7
, pp. 367-374
-
-
Hooper, L.V.1
-
36
-
-
26944478553
-
Evaluation of universal probes and primer sets for assessing total bacterial load in clinical samples: General implications and practical use in endodontic antimicrobial therapy
-
Horz HP, Vianna ME, Gomes BP, Conrads G. 2005. Evaluation of universal probes and primer sets for assessing total bacterial load in clinical samples: General implications and practical use in endodontic antimicrobial therapy. J. Clin. Microbiol. 43:5332-5337.
-
(2005)
J. Clin. Microbiol.
, vol.43
, pp. 5332-5337
-
-
Horz, H.P.1
Vianna, M.E.2
Gomes, B.P.3
Conrads, G.4
-
37
-
-
34948842866
-
Accuracy and quality of massively parallel DNA pyrosequencing
-
Huse SM, Huber JA, Morrison HG, Sogin ML, Welch DM. 2007 Accuracy and quality of massively parallel DNA pyrosequencing Genome Biol. 8:R143.
-
(2007)
Genome Biol
, vol.8
-
-
Huse, S.M.1
Huber, J.A.2
Morrison, H.G.3
Sogin, M.L.4
Welch, D.M.5
-
38
-
-
67149143603
-
Application of sequencedependent electrophoresis fingerprinting in exploring biodiversity and population dynamics of human intestinal microbiota: What can be revealed? Interdisciplin
-
Huys G, Vanhoutte T, Vandamme P. 2008. Application of sequencedependent electrophoresis fingerprinting in exploring biodiversity and population dynamics of human intestinal microbiota: What can be revealed? Interdisciplin. Perspect. Infect. Dis. 2008:597603.
-
(2008)
Perspect. Infect. Dis.
, vol.2008
, pp. 597603
-
-
Huys, G.1
Vanhoutte, T.2
Vandamme, P.3
-
39
-
-
36749063615
-
The micro-Petri dish, a million-well growth chip for the culture and high-throughput screening of microorganisms
-
Ingham CJ, Sprenkels A, Bomer J, Molenaar D, van den Berg A, et al. 2007. The micro-Petri dish, a million-well growth chip for the culture and high-throughput screening of microorganisms. Proc Natl. Acad. Sci. USA 104:18217-18222.
-
(2007)
Proc Natl. Acad. Sci. USA
, vol.104
, pp. 18217-18222
-
-
Ingham, C.J.1
Sprenkels, A.2
Bomer, J.3
Molenaar, D.4
van den Berg, A.5
-
40
-
-
62749106838
-
Non-digestible food ingredients, colonic microbiota and the impact on gut health and immunity: A role for metabolomics
-
Jacobs DM, Gaudier E, van Duynhoven J, Vaughan EE. 2009 Non-digestible food ingredients, colonic microbiota and the impact on gut health and immunity: A role for metabolomics. Curr. Drug Metab. 10:41-54.
-
(2009)
Curr. Drug Metab.
, vol.10
, pp. 41-54
-
-
Jacobs, D.M.1
Gaudier, E.2
van Duynhoven, J.3
Vaughan, E.E.4
-
41
-
-
74549135281
-
Transcriptome sequencing with the Genome Sequencer FLX system
-
vi-vii
-
Jarvie T, Harkins T. 2008. Transcriptome sequencing with the Genome Sequencer FLX system. Nat. Methods 5:vi-vii.
-
(2008)
Nat. Methods
, vol.5
-
-
Jarvie, T.1
Harkins, T.2
-
42
-
-
35348835922
-
Accessing the mobile metagenome of the human gut microbiota
-
Jones BV, Marchesi JR. 2007a. Accessing the mobile metagenome of the human gut microbiota. Mol. Biosyst. 3:749-758.
-
(2007)
Mol. Biosyst.
, vol.3
, pp. 749-758
-
-
Jones, B.V.1
Marchesi, J.R.2
-
43
-
-
33845959386
-
Transposon-aided capture (TRACA) of plasmids resident in the human gut mobile metagenome
-
Jones BV, Marchesi JR. 2007b. Transposon-aided capture (TRACA) of plasmids resident in the human gut mobile metagenome. Nat. Methods 4:55-61.
-
(2007)
Nat. Methods
, vol.4
, pp. 55-61
-
-
Jones, B.V.1
Marchesi, J.R.2
-
44
-
-
51649086648
-
Functional and comparative metagenomic analysis of bile salt hydrolase activity in the human gut microbiome
-
Jones BV, Begley M, Hill C, Gahan CG, Marchesi JR. 2008. Functional and comparative metagenomic analysis of bile salt hydrolase activity in the human gut microbiome. Proc. Natl. Acad. Sci. USA 105:13580-13585.
-
(2008)
Proc. Natl. Acad. Sci. USA
, vol.105
, pp. 13580-13585
-
-
Jones, B.V.1
Begley, M.2
Hill, C.3
Gahan, C.G.4
Marchesi, J.R.5
-
45
-
-
60749104295
-
Sequence-based feature prediction and annotation of proteins
-
Juncker AS, Jensen LJ, Pierleoni A, Bernsel A, Tress ML, et al. 2009. Sequence-based feature prediction and annotation of proteins Genome Biol. 10:206.
-
(2009)
Genome Biol
, vol.10
, pp. 206
-
-
Juncker, A.S.1
Jensen, L.J.2
Pierleoni, A.3
Bernsel, A.4
Tress, M.L.5
-
47
-
-
58149218590
-
Pyrosequencing analysis of the oral microflora of healthy adults
-
Keijser BJ, Zaura E, Huse SM, van der Vossen JM, Schuren FH, et al. 2008. Pyrosequencing analysis of the oral microflora of healthy adults. J. Dental Res. 87:1016-1020.
-
(2008)
J. Dental Res.
, vol.87
, pp. 1016-1020
-
-
Keijser, B.J.1
Zaura, E.2
Huse, S.M.3
van der Vossen, J.M.4
Schuren, F.H.5
-
48
-
-
48249089994
-
Metagenomics: Access to unculturable microbes in the environment
-
Kimura N. 2006. Metagenomics: Access to unculturable microbes in the environment. Microbes Environ. 21:201-215.
-
(2006)
Microbes Environ
, vol.21
, pp. 201-215
-
-
Kimura, N.1
-
49
-
-
0036500993
-
Systems biology: A brief overview
-
Kitano H. 2002a. Systems biology: A brief overview. Science 295:1662-1664.
-
(2002)
Science
, vol.295
, pp. 1662-1664
-
-
Kitano, H.1
-
50
-
-
0037079054
-
Computational systems biology
-
Kitano H. 2002b. Computational systems biology. Nature 420:206-210.
-
(2002)
Nature
, vol.420
, pp. 206-210
-
-
Kitano, H.1
-
51
-
-
84886676862
-
-
Exploring the Functionality of Intestinal Bifidobacteria: A Post-Genomics Approach. Wageningen University, Wageningen
-
Klaassens ES. 2007. Exploring the Functionality of Intestinal Bifidobacteria: A Post-Genomics Approach. Wageningen University, Wageningen.
-
(2007)
-
-
Klaassens, E.S.1
-
52
-
-
33847177982
-
Metaproteomics approach to study the functionality of the microbiota in the human infant gastrointestinal tract
-
Klaassens ES, de Vos WM, Vaughan EE. 2007. Metaproteomics approach to study the functionality of the microbiota in the human infant gastrointestinal tract. Appl. Environ. Microbiol. 73: 1388-1392.
-
(2007)
Appl. Environ. Microbiol.
, vol.73
, pp. 1388-1392
-
-
Klaassens, E.S.1
de Vos, W.M.2
Vaughan, E.E.3
-
53
-
-
65549147992
-
Mixed-species genomic microarray analysis of fecal samples reveals differential transcriptional responses of bifidobacteria in breast- and formula-fed infants
-
Klaassens ES, Boesten RJ, Haarman M, Knol J, Schuren FH, et al. 2009. Mixed-species genomic microarray analysis of fecal samples reveals differential transcriptional responses of bifidobacteria in breast- and formula-fed infants. Appl. Environ. Microbiol 75:2668-2676.
-
(2009)
Appl. Environ. Microbiol
, vol.75
, pp. 2668-2676
-
-
Klaassens, E.S.1
Boesten, R.J.2
Haarman, M.3
Knol, J.4
Schuren, F.H.5
-
54
-
-
38449088143
-
Comparative metagenomics revealed commonly enriched gene sets in human gut microbiomes
-
Kurokawa K, Itoh T, Kuwahara T, Oshima K, Toh H, et al. 2007 Comparative metagenomics revealed commonly enriched gene sets in human gut microbiomes. DNA Res. 14:169-181.
-
(2007)
DNA Res
, vol.14
, pp. 169-181
-
-
Kurokawa, K.1
Itoh, T.2
Kuwahara, T.3
Oshima, K.4
Toh, H.5
-
55
-
-
49449092314
-
Functional analysis of four bile salt hydrolase and penicillin acylase family members in Lactobacillus plantarum WCFS1
-
Lambert JM, Bongers RS, de Vos WM, Kleerebezem M. 2008a Functional analysis of four bile salt hydrolase and penicillin acylase family members in Lactobacillus plantarum WCFS1. Appl. Environ Microbiol. 74:4719-4726.
-
(2008)
Appl. Environ Microbiol.
, vol.74
, pp. 4719-4726
-
-
Lambert, J.M.1
Bongers, R.S.2
de Vos, W.M.3
Kleerebezem, M.4
-
56
-
-
51149085146
-
Improved annotation of conjugated bile acid hydrolase superfamily members in gram-positive bacteria
-
Lambert JM, Siezen RJ, de Vos WM, Kleerebezem M. 2008b Improved annotation of conjugated bile acid hydrolase superfamily members in gram-positive bacteria. Microbiology (Reading, England) 154:2492-500.
-
(2008)
Microbiology (Reading, England)
, vol.154
, pp. 2492-2500
-
-
Lambert, J.M.1
Siezen, R.J.2
de Vos, W.M.3
Kleerebezem, M.4
-
57
-
-
18944401261
-
Biodiversity of the mucosa-associated microbiota is stable along the distal digestive tract in healthy individuals and patients with IBD Inflamm
-
Lepage P, Seksik P, Sutren M, de la Cochetiere MF, Jian R, et al. 2005. Biodiversity of the mucosa-associated microbiota is stable along the distal digestive tract in healthy individuals and patients with IBD Inflamm. Bowel Dis. 11:473-480.
-
(2005)
Bowel Dis
, vol.11
, pp. 473-480
-
-
Lepage, P.1
Seksik, P.2
Sutren, M.3
de la Cochetiere, M.F.4
Jian, R.5
-
58
-
-
69949088176
-
Better living through microbial action: The benefits of the mammalian gastrointestinal microbiota on the host Environ
-
Leser TD and Molbak L. 2009. Better living through microbial action: The benefits of the mammalian gastrointestinal microbiota on the host Environ. Microbiol. 11:2194-2206.
-
(2009)
Microbiol
, vol.11
, pp. 2194-2206
-
-
Leser, T.D.1
Molbak, L.2
-
59
-
-
46249085739
-
Evolution of mammals and their gut microbes
-
Ley RE, Hamady M, Lozupone C, Turnbaugh PJ, Ramey RR, et al. 2008a. Evolution of mammals and their gut microbes. Science 320:1647-1651.
-
(2008)
Science
, vol.320
, pp. 1647-1651
-
-
Ley, R.E.1
Hamady, M.2
Lozupone, C.3
Turnbaugh, P.J.4
Ramey, R.R.5
-
60
-
-
52049092682
-
2008b Worlds within worlds: evolution of the vertebrate gut microbiota
-
Ley RE, Lozupone CA, Hamady M, Knight R, Gordon JI. 2008b Worlds within worlds: evolution of the vertebrate gut microbiota. Nat Rev. Microbiol. 6:776-788.
-
Nat Rev. Microbiol.
, vol.6
, pp. 776-788
-
-
Ley, R.E.1
Lozupone, C.A.2
Hamady, M.3
Knight, R.4
Gordon, J.I.5
-
61
-
-
41149099000
-
Symbiotic gut microbes modulate human metabolic phenotypes
-
Li M, Wang B, Zhang M, Rantalainen M, Wang S, et al. 2008 Symbiotic gut microbes modulate human metabolic phenotypes. Proc Natl. Acad. Sci. USA 105:2117-2122.
-
(2008)
Proc Natl. Acad. Sci. USA
, vol.105
, pp. 2117-2122
-
-
Li, M.1
Wang, B.2
Zhang, M.3
Rantalainen, M.4
Wang, S.5
-
62
-
-
62349126177
-
Application of FT-ICR MS for the study of protein complexes
-
Liu YQ, Pan YJ. 2009. Application of FT-ICR MS for the study of protein complexes. Appl. Spectrosc. Rev. 44:231-244.
-
(2009)
Appl. Spectrosc. Rev.
, vol.44
, pp. 231-244
-
-
Liu, Y.Q.1
Pan, Y.J.2
-
63
-
-
33947413117
-
Development of a semiquantitative degenerate real-time pcr-based assay for estimation of numbers of butyrylcoenzyme A (CoA) CoA transferase genes in complex bacterial samples Appl
-
Louis P, Flint HJ. 2007. Development of a semiquantitative degenerate real-time pcr-based assay for estimation of numbers of butyrylcoenzyme A (CoA) CoA transferase genes in complex bacterial samples Appl. Environ. Microbiol. 73:2009-2012.
-
(2007)
Environ. Microbiol.
, vol.73
, pp. 2009-2012
-
-
Louis, P.1
Flint, H.J.2
-
64
-
-
84886692753
-
Diversity of human colonic butyrate-producing bacteria revealed by analysis of the butyryl-CoA:acetate CoA-transferase gene
-
00:000-000
-
Louis P, Young P, Holtrop G, Flint HJ. 2009. Diversity of human colonic butyrate-producing bacteria revealed by analysis of the butyryl-CoA:acetate CoA-transferase gene. Environ. Microbiol. 00:000-000.
-
(2009)
Environ. Microbiol.
-
-
Louis, P.1
Young, P.2
Holtrop, G.3
Flint, H.J.4
-
65
-
-
2942625911
-
Interactions between commensal intestinal bacteria and the immune system
-
Macpherson AJ, Harris NL. 2004. Interactions between commensal intestinal bacteria and the immune system. Nat. Rev. Immunol 4:478-485.
-
(2004)
Nat. Rev. Immunol
, vol.4
, pp. 478-485
-
-
Macpherson, A.J.1
Harris, N.L.2
-
66
-
-
67650394369
-
Transcriptome sequencing of the microarray quality control (MAQC) RNA reference samples using next generation sequencing
-
Mane SP, Evans C, Cooper KL, Crasta OR, Folkerts O, et al. 2009. Transcriptome sequencing of the microarray quality control (MAQC) RNA reference samples using next generation sequencing BMC Genomics 10:264.
-
(2009)
BMC Genomics
, vol.10
, pp. 264
-
-
Mane, S.P.1
Evans, C.2
Cooper, K.L.3
Crasta, O.R.4
Folkerts, O.5
-
67
-
-
34248165412
-
Metaproteomics: A new approach for studying functional microbial ecology Microb
-
Maron PA, Ranjard L, Mougel C, Lemanceau P. 2007. Metaproteomics: A new approach for studying functional microbial ecology Microb. Ecol. 53:486-493.
-
(2007)
Ecol
, vol.53
, pp. 486-493
-
-
Maron, P.A.1
Ranjard, L.2
Mougel, C.3
Lemanceau, P.4
-
68
-
-
65249154282
-
Panorganismal gut microbiome-host metabolic crosstalk
-
Martin FP, Sprenger N, Yap IK, Wang Y, Bibiloni R, et al. 2009 Panorganismal gut microbiome-host metabolic crosstalk. J. Proteome Res. 8:2090-2105.
-
(2009)
J. Proteome Res.
, vol.8
, pp. 2090-2105
-
-
Martin, F.P.1
Sprenger, N.2
Yap, I.K.3
Wang, Y.4
Bibiloni, R.5
-
69
-
-
10444226583
-
Use of 16S rRNA gene-targeted group-specific primers for real-time PCR analysis of predominant bacteria in human feces
-
Matsuki T, Watanabe K, Fujimoto J, Takada T, Tanaka R. 2004 Use of 16S rRNA gene-targeted group-specific primers for real-time PCR analysis of predominant bacteria in human feces. Appl. Environ Microbiol. 70:7220-7228.
-
(2004)
Appl. Environ Microbiol.
, vol.70
, pp. 7220-7228
-
-
Matsuki, T.1
Watanabe, K.2
Fujimoto, J.3
Takada, T.4
Tanaka, R.5
-
70
-
-
70350218818
-
Applications of new sequencing technologies for transcriptome analysis
-
Morozova O, Hirst M, Marra MA. 2009. Applications of new sequencing technologies for transcriptome analysis. Annu. Rev Genomics Hum. Genet. 10:135-151.
-
(2009)
Annu. Rev Genomics Hum. Genet.
, vol.10
, pp. 135-151
-
-
Morozova, O.1
Hirst, M.2
Marra, M.A.3
-
71
-
-
59849113547
-
Microbes in gastrointestinal health and disease
-
Neish AS. 2009. Microbes in gastrointestinal health and disease. Gastroenterology 136:65-80.
-
(2009)
Gastroenterology
, vol.136
, pp. 65-80
-
-
Neish, A.S.1
-
73
-
-
0016711037
-
High resolution two-dimensional electrophoresis of proteins
-
O'Farrell PH. 1975. High resolution two-dimensional electrophoresis of proteins. J. Biol. Chem. 250:4007-4021.
-
(1975)
J. Biol. Chem.
, vol.250
, pp. 4007-4021
-
-
O'Farrell, P.H.1
-
74
-
-
70449726556
-
Metabolomics, a novel tool for studies of nutrition, metabolism and lipid dysfunction
-
Oresic M. 2009. Metabolomics, a novel tool for studies of nutrition, metabolism and lipid dysfunction. Nutr. Metab. Cardiovasc. Dis 19:816-824.
-
(2009)
Nutr. Metab. Cardiovasc. Dis
, vol.19
, pp. 816-824
-
-
Oresic, M.1
-
75
-
-
70349956497
-
Direct RNA sequencing
-
Ozsolak F, Platt AR, Jones DR, Reifenberger JG, Sass LE, et al. 2009. Direct RNA sequencing. Nature 461:814-818.
-
(2009)
Nature
, vol.461
, pp. 814-818
-
-
Ozsolak, F.1
Platt, A.R.2
Jones, D.R.3
Reifenberger, J.G.4
Sass, L.E.5
-
76
-
-
66249145389
-
Highthroughput quantitative analysis of the human intestinal microbiota with a phylogenetic microarray
-
Paliy O, Kenche H, Abernathy F, Michail S. 2009. Highthroughput quantitative analysis of the human intestinal microbiota with a phylogenetic microarray. Appl. Environ. Microbiol. 75: 3572-3579.
-
(2009)
Appl. Environ. Microbiol.
, vol.75
, pp. 3572-3579
-
-
Paliy, O.1
Kenche, H.2
Abernathy, F.3
Michail, S.4
-
77
-
-
31544436089
-
Rapid quantitative profiling of complex microbial populations
-
e5
-
Palmer C, Bik EM, Eisen MB, Eckburg PB, Sana TR, et al. 2006. Rapid quantitative profiling of complex microbial populations Nucleic Acids Res. 34:e5.
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Palmer, C.1
Bik, E.M.2
Eisen, M.B.3
Eckburg, P.B.4
Sana, T.R.5
-
78
-
-
44649139744
-
Metagenome microarray for screening of fosmid clones containing specific genes
-
Park SJ, Kang CH, Chae JC, Rhee SK. 2008. Metagenome microarray for screening of fosmid clones containing specific genes. FEMS Microbiol. Lett. 284:28-34.
-
(2008)
FEMS Microbiol. Lett.
, vol.284
, pp. 28-34
-
-
Park, S.J.1
Kang, C.H.2
Chae, J.C.3
Rhee, S.K.4
-
79
-
-
65549099632
-
Structure and complexity of a bacterial transcriptome
-
Passalacqua KD, Varadarajan A, Ondov BD, Okou DT, Zwick ME, Bergman NH. 2009. Structure and complexity of a bacterial transcriptome. J. Bacteriol. 191:3203-3211.
-
(2009)
J. Bacteriol.
, vol.191
, pp. 3203-3211
-
-
Passalacqua, K.D.1
Varadarajan, A.2
Ondov, B.D.3
Okou, D.T.4
Zwick, M.E.5
Bergman, N.H.6
-
80
-
-
70449713952
-
The NIH Human Microbiome Project
-
Peterson J, Garges S, Giovanni M, McInnes P, Wang L, et al. 2009. The NIH Human Microbiome Project. Genome Res. 19: 2317-2323.
-
(2009)
Genome Res
, vol.19
, pp. 2317-2323
-
-
Peterson, J.1
Garges, S.2
Giovanni, M.3
McInnes, P.4
Wang, L.5
-
81
-
-
77950251400
-
A human gut microbial gene catalog established by deep metagenomic sequencing
-
Qin J, Li R, Raes J, Arumugam M, Burgdorf KS, et al. 2010. A human gut microbial gene catalog established by deep metagenomic sequencing. Nature 464:59-65.
-
(2010)
Nature
, vol.464
, pp. 59-65
-
-
Qin, J.1
Li, R.2
Raes, J.3
Arumugam, M.4
Burgdorf, K.S.5
-
82
-
-
49649089054
-
Molecular eco-systems biology: Towards an understanding of community function
-
Raes J, Bork P. 2008. Molecular eco-systems biology: Towards an understanding of community function. Nat. Rev. Microbiol 6:693-699.
-
(2008)
Nat. Rev. Microbiol
, vol.6
, pp. 693-699
-
-
Raes, J.1
Bork, P.2
-
83
-
-
84886657269
-
-
Diversity of Human Gastrointestinal Microbiota-Novel Perspectives from High Throughput Analyses Wageningen University, Wageningen, The Netherlands
-
Rajilíc-Stojanovíc M. 2007. Diversity of Human Gastrointestinal Microbiota-Novel Perspectives from High Throughput Analyses Wageningen University, Wageningen, The Netherlands.
-
(2007)
-
-
Rajilíc-Stojanovíc, M.1
-
84
-
-
34547683600
-
Diversity of the human gastrointestinal tract microbiota revisited
-
Rajilíc-Stojanovíc M, Smidt H, de Vos WM. 2007. Diversity of the human gastrointestinal tract microbiota revisited. Environ. Microbiol. 9:2125-2136.
-
(2007)
Environ. Microbiol.
, vol.9
, pp. 2125-2136
-
-
Rajilíc-Stojanovíc, M.1
Smidt, H.2
de Vos, W.M.3
-
85
-
-
67649945513
-
Development and application of the human intestinal tract chip, a phylogenetic microarray: analysis of universally conserved phylotypes in the abundant microbiota of young and elderly adults
-
Rajilíc-Stojanovíc M, Heilig HG, Molenaar D, Kajander K, Surakka A, et al. 2009. Development and application of the human intestinal tract chip, a phylogenetic microarray: analysis of universally conserved phylotypes in the abundant microbiota of young and elderly adults. Environ. Microbiol.
-
(2009)
Environ. Microbiol
-
-
Rajilíc-Stojanovíc, M.1
Heilig, H.G.2
Molenaar, D.3
Kajander, K.4
Surakka, A.5
-
87
-
-
18844481269
-
Cloning the soil metagenome: a strategy for accessing the genetic and functional diversity of uncultured microorganisms Appl
-
Rondon MR, August PR, Bettermann AD, Brady SF, Grossman TH, et al. 2000. Cloning the soil metagenome: a strategy for accessing the genetic and functional diversity of uncultured microorganisms Appl. Environ. Microbiol. 66:2541-2547.
-
(2000)
Environ. Microbiol.
, vol.66
, pp. 2541-2547
-
-
Rondon, M.R.1
August, P.R.2
Bettermann, A.D.3
Brady, S.F.4
Grossman, T.H.5
-
88
-
-
57349131283
-
Micro-eukaryotic diversity of the human distal gut microbiota: Qualitative assessment using culture-dependent and -independent analysis of faeces
-
Scanlan PD and Marchesi JR. 2008. Micro-eukaryotic diversity of the human distal gut microbiota: Qualitative assessment using culture-dependent and -independent analysis of faeces. ISME J. 2:1183-1193.
-
(2008)
ISME J
, vol.2
, pp. 1183-1193
-
-
Scanlan, P.D.1
Marchesi, J.R.2
-
90
-
-
0042530104
-
Metagenomic profiling: Microarray analysis of an environmental genomic library
-
Sebat JL, Colwell FS, Crawford RL. 2003. Metagenomic profiling: Microarray analysis of an environmental genomic library. Appl Environ. Microbiol. 69:4927-4934.
-
(2003)
Appl Environ. Microbiol
, vol.69
, pp. 4927-4934
-
-
Sebat, J.L.1
Colwell, F.S.2
Crawford, R.L.3
-
91
-
-
0030690924
-
A study of iterative type II polyketide synthases, using bacterial genes cloned from soil DNA: A means to access and use genes from uncultured microorganisms
-
Seow KT, Meurer G, Gerlitz M, Wendt-Pienkowski E, Hutchinson CR, Davies J. 1997. A study of iterative type II polyketide synthases, using bacterial genes cloned from soil DNA: A means to access and use genes from uncultured microorganisms. J. Bacteriol 179:7360-7368.
-
(1997)
J. Bacteriol
, vol.179
, pp. 7360-7368
-
-
Seow, K.T.1
Meurer, G.2
Gerlitz, M.3
Wendt-Pienkowski, E.4
Hutchinson, C.R.5
Davies, J.6
-
92
-
-
0032755259
-
Direct analysis of genes encoding 16S rRNA from complex communities reveals many novel molecular species within the human gut Appl
-
Suau A, Bonnet R, Sutren M, Godon JJ, Gibson GR, et al. 1999 Direct analysis of genes encoding 16S rRNA from complex communities reveals many novel molecular species within the human gut Appl. Environ. Microbiol. 65:4799-4807.
-
(1999)
Environ. Microbiol.
, vol.65
, pp. 4799-4807
-
-
Suau, A.1
Bonnet, R.2
Sutren, M.3
Godon, J.J.4
Gibson, G.R.5
-
93
-
-
62949186588
-
Gut microbiome modulates the toxicity of hydrazine: A metabonomic study
-
Swann J, Wang Y, Abecia L, Costabile A, Tuohy K, et al. 2009 Gut microbiome modulates the toxicity of hydrazine: A metabonomic study. Mol. Biosyst. 5:351-355.
-
(2009)
Mol. Biosyst.
, vol.5
, pp. 351-355
-
-
Swann, J.1
Wang, Y.2
Abecia, L.3
Costabile, A.4
Tuohy, K.5
-
94
-
-
70349233883
-
Towards the human intestinal microbiota phylogenetic core
-
Tap J, Mondot S, Levenez F, Pelletier E, Caron C, et al. 2009 Towards the human intestinal microbiota phylogenetic core. Environ Microbiol. 11:2574-2584.
-
(2009)
Environ Microbiol
, vol.11
, pp. 2574-2584
-
-
Tap, J.1
Mondot, S.2
Levenez, F.3
Pelletier, E.4
Caron, C.5
-
95
-
-
84886698586
-
-
RNA direct. SciBX 2 1-2 Tartar A, Wheeler MM, Zhou X, Coy MR, Boucias DG, Scharf ME. 2009. Parallel metatranscriptome analyses of host and symbiont gene expression in the gut of the termite
-
Taroncher-Oldenburg G. 2009. RNA direct. SciBX 2:1-2 Tartar A, Wheeler MM, Zhou X, Coy MR, Boucias DG, Scharf ME. 2009. Parallel metatranscriptome analyses of host and symbiont gene expression in the gut of the termite Reticulitermes flavipes Biotechnol. Biofuels 2:25.
-
(2009)
Reticulitermes flavipes Biotechnol. Biofuels
, vol.2
, pp. 25
-
-
Taroncher-Oldenburg, G.1
-
96
-
-
0036713509
-
Transcriptome analysis of Escherichia coli using high-density oligonucleotide probe arrays
-
Tjaden B, Saxena RM, Stolyar S, Haynor DR, Kolker E, Rosenow C. 2002. Transcriptome analysis of Escherichia coli using high-density oligonucleotide probe arrays. Nucleic Acids Res 30:3732-3738.
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 3732-3738
-
-
Tjaden, B.1
Saxena, R.M.2
Stolyar, S.3
Haynor, D.R.4
Kolker, E.5
Rosenow, C.6
-
97
-
-
52649090774
-
An invitation to the marriage of metagenomics and metabolomics
-
Turnbaugh PJ, Gordon JI. 2008. An invitation to the marriage of metagenomics and metabolomics. Cell 134:708-713.
-
(2008)
Cell
, vol.134
, pp. 708-713
-
-
Turnbaugh, P.J.1
Gordon, J.I.2
-
98
-
-
35348968286
-
The human microbiome project
-
Turnbaugh PJ, Ley RE, Hamady M, Fraser-Liggett CM, Knight R, Gordon JI. 2007. The human microbiome project. Nature 449:804-810.
-
(2007)
Nature
, vol.449
, pp. 804-810
-
-
Turnbaugh, P.J.1
Ley, R.E.2
Hamady, M.3
Fraser-Liggett, C.M.4
Knight, R.5
Gordon, J.I.6
-
99
-
-
41849127118
-
Dietinduced obesity is linked to marked but reversible alterations in the mouse distal gut microbiome
-
Turnbaugh PJ, Backhed F, Fulton L, Gordon JI. 2008. Dietinduced obesity is linked to marked but reversible alterations in the mouse distal gut microbiome. Cell Host Microbe 3:213-223.
-
(2008)
Cell Host Microbe
, vol.3
, pp. 213-223
-
-
Turnbaugh, P.J.1
Backhed, F.2
Fulton, L.3
Gordon, J.I.4
-
100
-
-
58749112734
-
A core gut microbiome in obese and lean twins
-
Turnbaugh PJ, Hamady M, Yatsunenko T, Cantarel BL, Duncan A, et al. 2009. A core gut microbiome in obese and lean twins. Nature 457:480-484.
-
(2009)
Nature
, vol.457
, pp. 480-484
-
-
Turnbaugh, P.J.1
Hamady, M.2
Yatsunenko, T.3
Cantarel, B.L.4
Duncan, A.5
-
101
-
-
19144369096
-
Substrateinduced gene-expression screening of environmental metagenome libraries for isolation of catabolic genes
-
Uchiyama T, Abe T, Ikemura T, Watanabe K. 2005. Substrateinduced gene-expression screening of environmental metagenome libraries for isolation of catabolic genes. Nat. Biotechnol. 23:88-93.
-
(2005)
Nat. Biotechnol.
, vol.23
, pp. 88-93
-
-
Uchiyama, T.1
Abe, T.2
Ikemura, T.3
Watanabe, K.4
-
102
-
-
50249171225
-
Substrate-induced gene expression (SIGEX) screening of metagenome libraries
-
Uchiyama T, Watanabe K. 2008. Substrate-induced gene expression (SIGEX) screening of metagenome libraries. Nat. Protoc 3:1202-1212.
-
(2008)
Nat. Protoc
, vol.3
, pp. 1202-1212
-
-
Uchiyama, T.1
Watanabe, K.2
-
103
-
-
79953204638
-
Microarray analysis and barcoded pyrosequencing provide consistent microbial profiles depending on the source of human intestinal samples
-
Van den Bogert B, De Vos WM, Zoetendal EG, Kleerebezem M. 2011. Microarray analysis and barcoded pyrosequencing provide consistent microbial profiles depending on the source of human intestinal samples. Appl. Environ. Microbiol. 77:2071-2080.
-
(2011)
Appl. Environ. Microbiol.
, vol.77
, pp. 2071-2080
-
-
Van den Bogert, B.1
De Vos, W.M.2
Zoetendal, E.G.3
Kleerebezem, M.4
-
104
-
-
11144354360
-
Environmental genome shotgun sequencing of the Sargasso Sea
-
Venter JC, Remington K, Heidelberg JF, Halpern AL, Rusch D, et al. 2004. Environmental genome shotgun sequencing of the Sargasso Sea. Science 304:66-74.
-
(2004)
Science
, vol.304
, pp. 66-74
-
-
Venter, J.C.1
Remington, K.2
Heidelberg, J.F.3
Halpern, A.L.4
Rusch, D.5
-
105
-
-
58549089276
-
Shotgun metaproteomics of the human distal gut microbiota
-
Verberkmoes NC, Russell AL, Shah M, Godzik A, Rosenquist M, et al. 2009. Shotgun metaproteomics of the human distal gut microbiota ISME J. 3:179-189.
-
(2009)
ISME J
, vol.3
, pp. 179-189
-
-
Verberkmoes, N.C.1
Russell, A.L.2
Shah, M.3
Godzik, A.4
Rosenquist, M.5
-
106
-
-
24944540682
-
Comparison of bacterial diversity along the human intestinal tract by direct cloning and sequencing of 16S rRNA genes
-
Wang M, Ahrne S, Jeppsson B, Molin G. 2005. Comparison of bacterial diversity along the human intestinal tract by direct cloning and sequencing of 16S rRNA genes. FEMS Microbiol. Ecol. 54: 219-231.
-
(2005)
FEMS Microbiol. Ecol.
, vol.54
, pp. 219-231
-
-
Wang, M.1
Ahrne, S.2
Jeppsson, B.3
Molin, G.4
-
107
-
-
65749105400
-
A perspective: metatranscriptomics as a tool for the discovery of novel biocatalysts
-
Warnecke F, Hess M. 2009. A perspective: metatranscriptomics as a tool for the discovery of novel biocatalysts. J. Biotechnol 142:91-95.
-
(2009)
J. Biotechnol
, vol.142
, pp. 91-95
-
-
Warnecke, F.1
Hess, M.2
-
108
-
-
62649151803
-
Metabolomics analysis reveals large effects of gut microflora on mammalian blood metabolites
-
Wikoff WR, Anfora AT, Liu J, Schultz PG, Lesley SA, et al. 2009. Metabolomics analysis reveals large effects of gut microflora on mammalian blood metabolites. Proc. Natl. Acad. Sci. USA 106:3698-3703.
-
(2009)
Proc. Natl. Acad. Sci. USA
, vol.106
, pp. 3698-3703
-
-
Wikoff, W.R.1
Anfora, A.T.2
Liu, J.3
Schultz, P.G.4
Lesley, S.A.5
-
109
-
-
26844491940
-
Intracellular screen to identify metagenomic clones that induce or inhibit a quorum-sensing biosensor
-
Williamson LL, Borlee BR, Schloss PD, Guan C, Allen HK, Handelsman J. 2005. Intracellular screen to identify metagenomic clones that induce or inhibit a quorum-sensing biosensor. Appl. Environ Microbiol. 71:6335-6344.
-
(2005)
Appl. Environ Microbiol.
, vol.71
, pp. 6335-6344
-
-
Williamson, L.L.1
Borlee, B.R.2
Schloss, P.D.3
Guan, C.4
Allen, H.K.5
Handelsman, J.6
-
110
-
-
31944437874
-
Metaproteomics: Studying functional gene expression in microbial ecosystems
-
Wilmes P, Bond PL. 2006. Metaproteomics: Studying functional gene expression in microbial ecosystems. Trends Microbiol. 14:92-97.
-
(2006)
Trends Microbiol
, vol.14
, pp. 92-97
-
-
Wilmes, P.1
Bond, P.L.2
-
111
-
-
62649160909
-
Mapping the Burkholderia cenocepacia niche response via high-throughput sequencing
-
Yoder-Himes DR, Chain PS, Zhu Y, Wurtzel O, Rubin EM, et al. 2009. Mapping the Burkholderia cenocepacia niche response via high-throughput sequencing. Proc. Natl. Acad. Sci. USA 106:3976-3981.
-
(2009)
Proc. Natl. Acad. Sci. USA
, vol.106
, pp. 3976-3981
-
-
Yoder-Himes, D.R.1
Chain, P.S.2
Zhu, Y.3
Wurtzel, O.4
Rubin, E.M.5
-
112
-
-
26844572199
-
Screening for novel enzymes from metagenome and SIGEX, as a way to improve it
-
Yun J, Ryu S. 2005. Screening for novel enzymes from metagenome and SIGEX, as a way to improve it. Microb. Cell Factories 4:8.
-
(2005)
Microb. Cell Factories
, vol.4
, pp. 8
-
-
Yun, J.1
Ryu, S.2
-
113
-
-
0031684010
-
Temperature gradient gel electrophoresis analysis of 16S rRNA from human fecal samples reveals stable and host-specific communities of active bacteria Appl
-
Zoetendal EG, Akkermans AD, de Vos WM. 1998. Temperature gradient gel electrophoresis analysis of 16S rRNA from human fecal samples reveals stable and host-specific communities of active bacteria Appl. Environ. Microbiol. 64:3854-3859.
-
(1998)
Environ. Microbiol.
, vol.64
, pp. 3854-3859
-
-
Zoetendal, E.G.1
Akkermans, A.D.2
de Vos, W.M.3
-
114
-
-
0036300743
-
Mucosa-associated bacteria in the human gastrointestinal tract are uniformly distributed along the colon and differ from the community recovered from feces
-
Zoetendal EG, von Wright A, Vilpponen-Salmela T, Ben-Amor K, Akkermans AD, de Vos WM. 2002. Mucosa-associated bacteria in the human gastrointestinal tract are uniformly distributed along the colon and differ from the community recovered from feces. Appl Environ. Microbiol. 68:3401-3407.
-
(2002)
Appl Environ. Microbiol
, vol.68
, pp. 3401-3407
-
-
Zoetendal, E.G.1
von Wright, A.2
Vilpponen-Salmela, T.3
Ben-Amor, K.4
Akkermans, A.D.5
de Vos, W.M.6
-
115
-
-
0942279586
-
Molecular ecological analysis of the gastrointestinal microbiota: A review
-
Zoetendal EG, Collier CT, Koike S, Mackie RI, Gaskins HR. 2004 Molecular ecological analysis of the gastrointestinal microbiota: A review. J. Nutr. 134:465-472.
-
(2004)
J. Nutr.
, vol.134
, pp. 465-472
-
-
Zoetendal, E.G.1
Collier, C.T.2
Koike, S.3
Mackie, R.I.4
Gaskins, H.R.5
-
116
-
-
33847226411
-
Isolation of RNA from bacterial samples of the human gastrointestinal tract
-
Zoetendal EG, Booijink CC, Klaassens ES, Heilig HG, Kleerebezem M, et al. 2006. Isolation of RNA from bacterial samples of the human gastrointestinal tract. Nat. Protoc. 1:954-959.
-
(2006)
Nat. Protoc.
, vol.1
, pp. 954-959
-
-
Zoetendal, E.G.1
Booijink, C.C.2
Klaassens, E.S.3
Heilig, H.G.4
Kleerebezem, M.5
-
117
-
-
54349126970
-
Highthroughput diversity and functionality analysis of the gastrointestinal tract microbiota
-
Zoetendal EG, Rajilíc-Stojanovíc M, de Vos WM. 2008. Highthroughput diversity and functionality analysis of the gastrointestinal tract microbiota. Gut 57:1605-1615.
-
(2008)
Gut
, vol.57
, pp. 1605-1615
-
-
Zoetendal, E.G.1
Rajilíc-Stojanovíc, M.2
de Vos, W.M.3
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