-
1
-
-
77950251400
-
A human gut microbial gene catalogue established by metagenomic sequencing
-
Qin, J. et al. (2010) A human gut microbial gene catalogue established by metagenomic sequencing. Nature, 464, 59–65.
-
(2010)
Nature
, vol.464
, pp. 59-65
-
-
Qin, J.1
-
2
-
-
84866146940
-
Diversity, stability and resilience of the human gut microbiota
-
Lozupone, C.A. et al. (2012) Diversity, stability and resilience of the human gut microbiota. Nature, 489, 220–230.
-
(2012)
Nature
, vol.489
, pp. 220-230
-
-
Lozupone, C.A.1
-
3
-
-
78650118403
-
The struggle within: microbial influences on colorectal cancer
-
Arthur, J.C. et al. (2011) The struggle within: microbial influences on colorectal cancer. Inflamm. Bowel Dis., 17, 396–409.
-
(2011)
Inflamm. Bowel Dis
, vol.17
, pp. 396-409
-
-
Arthur, J.C.1
-
4
-
-
65749100406
-
Effect of Helicobacter pylori eradication on incidence of gastric cancer in human and animal models: underlying biochemical and molecular events
-
Kabir, S. (2009) Effect of Helicobacter pylori eradication on incidence of gastric cancer in human and animal models: underlying biochemical and molecular events. Helicobacter, 14, 159–171.
-
(2009)
Helicobacter
, vol.14
, pp. 159-171
-
-
Kabir, S.1
-
5
-
-
84862116034
-
Gut bacteria in health and disease: a survey on the interface between intestinal microbiology and colorectal cancer
-
Boleij, A. et al. (2012) Gut bacteria in health and disease: a survey on the interface between intestinal microbiology and colorectal cancer. Biol. Rev. Camb. Philos. Soc., 87, 701–730.
-
(2012)
Biol. Rev. Camb. Philos. Soc
, vol.87
, pp. 701-730
-
-
Boleij, A.1
-
6
-
-
69249232549
-
Colitis-associated colorectal cancer driven by T-bet deficiency in dendritic cells
-
Garrett, W.S. et al. (2009) Colitis-associated colorectal cancer driven by T-bet deficiency in dendritic cells. Cancer Cell, 16, 208–219.
-
(2009)
Cancer Cell
, vol.16
, pp. 208-219
-
-
Garrett, W.S.1
-
7
-
-
67650299380
-
Modulation of the intestinal microbiota alters colitis-associated colorectal cancer susceptibility
-
Uronis, J.M. et al. (2009) Modulation of the intestinal microbiota alters colitis-associated colorectal cancer susceptibility. PLoS One, 4, e6026.
-
(2009)
PLoS One
, vol.4
, pp. e6026
-
-
Uronis, J.M.1
-
8
-
-
69949120571
-
A human colonic commensal promotes colon tumorigenesis via activation of T helper type 17 T cell responses
-
Wu, S. et al. (2009) A human colonic commensal promotes colon tumorigenesis via activation of T helper type 17 T cell responses. Nat. Med., 15, 1016–1022.
-
(2009)
Nat. Med
, vol.15
, pp. 1016-1022
-
-
Wu, S.1
-
9
-
-
84867192879
-
Intestinal inflammation targets cancer-inducing activity of the microbiota
-
Arthur, J.C. et al. (2012) Intestinal inflammation targets cancer-inducing activity of the microbiota. Science, 338, 120–123.
-
(2012)
Science
, vol.338
, pp. 120-123
-
-
Arthur, J.C.1
-
10
-
-
0037331279
-
CD4+ CD25+ regulatory T lymphocytes inhibit microbially induced colon cancer in Rag2-deficient mice
-
Erdman, S.E. et al. (2003) CD4+ CD25+ regulatory T lymphocytes inhibit microbially induced colon cancer in Rag2-deficient mice. Am. J. Pathol., 162, 691–702.
-
(2003)
Am. J. Pathol
, vol.162
, pp. 691-702
-
-
Erdman, S.E.1
-
11
-
-
31544465904
-
Helicobacter infection is required for inflammation and colon cancer in SMAD3-deficient mice
-
Maggio-Price, L. et al. (2006) Helicobacter infection is required for inflammation and colon cancer in SMAD3-deficient mice. Cancer Res., 66, 828–838.
-
(2006)
Cancer Res
, vol.66
, pp. 828-838
-
-
Maggio-Price, L.1
-
12
-
-
33747481384
-
Innate immune inflammatory response against enteric bacteria Helicobacter hepaticus induces mammary adenocarcinoma in mice
-
Rao, V.P. et al. (2006) Innate immune inflammatory response against enteric bacteria Helicobacter hepaticus induces mammary adenocarcinoma in mice. Cancer Res., 66, 7395–7400.
-
(2006)
Cancer Res
, vol.66
, pp. 7395-7400
-
-
Rao, V.P.1
-
13
-
-
46249085505
-
Helicobacter hepaticus infection promotes colon tumorigenesis in the BALB/c-Rag2(-/-) Apc(Min/+) mouse
-
Nagamine, C.M. et al. (2008) Helicobacter hepaticus infection promotes colon tumorigenesis in the BALB/c-Rag2(-/-) Apc(Min/+) mouse. Infect. Immun., 76, 2758–2766.
-
(2008)
Infect. Immun
, vol.76
, pp. 2758-2766
-
-
Nagamine, C.M.1
-
14
-
-
59049099999
-
Nitric oxide and TNF-alpha trigger colonic inflammation and carcinogenesis in Helicobacter hepaticusinfected, Rag2-deficient mice
-
Erdman, S.E. et al. (2009) Nitric oxide and TNF-alpha trigger colonic inflammation and carcinogenesis in Helicobacter hepaticusinfected, Rag2-deficient mice. Proc. Natl. Acad. Sci. USA, 106, 1027–1032.
-
(2009)
Proc. Natl. Acad. Sci. USA
, vol.106
, pp. 1027-1032
-
-
Erdman, S.E.1
-
15
-
-
84864298078
-
Gut microbiota accelerate tumor growth via c-jun and STAT3 phosphorylation in APCMin/+ mice
-
Li, Y. et al. (2012) Gut microbiota accelerate tumor growth via c-jun and STAT3 phosphorylation in APCMin/+ mice. Carcinogenesis, 33, 1231–1238.
-
(2012)
Carcinogenesis
, vol.33
, pp. 1231-1238
-
-
Li, Y.1
-
16
-
-
84901487791
-
Gut microbiome and colorectal adenomas
-
Dulal, S. et al. (2014) Gut microbiome and colorectal adenomas. Cancer J., 20, 225–231.
-
(2014)
Cancer J
, vol.20
, pp. 225-231
-
-
Dulal, S.1
-
17
-
-
79956359184
-
Towards the human colorectal cancer microbiome
-
Marchesi, J.R. et al. (2011) Towards the human colorectal cancer microbiome. PLoS One, 6, e20447.
-
(2011)
PLoS One
, vol.6
, pp. e20447
-
-
Marchesi, J.R.1
-
18
-
-
84856534859
-
Fusobacterium nucleatum infection is prevalent in human colorectal carcinoma
-
Castellarin, M. et al. (2012) Fusobacterium nucleatum infection is prevalent in human colorectal carcinoma. Genome Res., 22, 299–306.
-
(2012)
Genome Res
, vol.22
, pp. 299-306
-
-
Castellarin, M.1
-
19
-
-
84863022950
-
Genomic analysis identifies association of Fusobacterium with colorectal carcinoma
-
Kostic, A.D. et al. (2012) Genomic analysis identifies association of Fusobacterium with colorectal carcinoma. Genome Res., 22, 292–298.
-
(2012)
Genome Res
, vol.22
, pp. 292-298
-
-
Kostic, A.D.1
-
20
-
-
84882354326
-
Fusobacterium nucleatum potentiates intestinal tumorigenesis and modulates the tumor-immune microenvironment
-
Kostic, A.D. et al. (2013) Fusobacterium nucleatum potentiates intestinal tumorigenesis and modulates the tumor-immune microenvironment. Cell Host Microbe, 14, 207–215.
-
(2013)
Cell Host Microbe
, vol.14
, pp. 207-215
-
-
Kostic, A.D.1
-
21
-
-
77952305328
-
A new conditional Apc-mutant mouse model for colorectal cancer
-
Robanus-Maandag, E.C. et al. (2010) A new conditional Apc-mutant mouse model for colorectal cancer. Carcinogenesis, 31, 946–952.
-
(2010)
Carcinogenesis
, vol.31
, pp. 946-952
-
-
Robanus-Maandag, E.C.1
-
22
-
-
67650109585
-
5-Aminosalicylic acid inhibits colitis-associated but not sporadic colorectal neoplasia in a novel conditional Apc mouse model
-
Koelink, P.J. et al. (2009) 5-Aminosalicylic acid inhibits colitis-associated but not sporadic colorectal neoplasia in a novel conditional Apc mouse model. Carcinogenesis, 30, 1217–1224.
-
(2009)
Carcinogenesis
, vol.30
, pp. 1217-1224
-
-
Koelink, P.J.1
-
23
-
-
0033041980
-
A novel urease-negative Helicobacter species associated with colitis and typhlitis in IL-10-deficient mice
-
Fox, J.G. et al. (1999) A novel urease-negative Helicobacter species associated with colitis and typhlitis in IL-10-deficient mice. Infect. Immun., 67, 1757–1762.
-
(1999)
Infect. Immun
, vol.67
, pp. 1757-1762
-
-
Fox, J.G.1
-
24
-
-
0034759480
-
Helicobacter typhlonius sp. nov., a Novel Murine Urease-Negative Helicobacter Species
-
Franklin, C.L. et al. (2001) Helicobacter typhlonius sp. nov., a Novel Murine Urease-Negative Helicobacter Species. J. Clin. Microbiol., 39, 3920–3926.
-
(2001)
J. Clin. Microbiol
, vol.39
, pp. 3920-3926
-
-
Franklin, C.L.1
-
25
-
-
5444248493
-
Akkermansia muciniphila gen. nov., sp. nov., a human intestinal mucin-degrading bacterium
-
(Pt 5)
-
Derrien, M. et al. (2004) Akkermansia muciniphila gen. nov., sp. nov., a human intestinal mucin-degrading bacterium. Int. J. Syst. Evol. Microbiol., 54(Pt 5), 1469–1476.
-
(2004)
Int. J. Syst. Evol. Microbiol
, vol.54
, pp. 1469-1476
-
-
Derrien, M.1
-
26
-
-
56549121232
-
Helicobacter typhlonius and Helicobacter rodentium differentially affect the severity of colon inflammation and inflammation-associated neoplasia in IL10-deficient mice
-
Chichlowski, M. et al. (2008) Helicobacter typhlonius and Helicobacter rodentium differentially affect the severity of colon inflammation and inflammation-associated neoplasia in IL10-deficient mice. Comp. Med., 58, 534–541.
-
(2008)
Comp. Med
, vol.58
, pp. 534-541
-
-
Chichlowski, M.1
-
27
-
-
84878465280
-
Cross-talk between Akkermansia muciniphila and intestinal epithelium controls diet-induced obesity
-
Everard, A. et al. (2013) Cross-talk between Akkermansia muciniphila and intestinal epithelium controls diet-induced obesity. Proc. Natl. Acad. Sci. USA, 110, 9066–9071.
-
(2013)
Proc. Natl. Acad. Sci. USA
, vol.110
, pp. 9066-9071
-
-
Everard, A.1
-
28
-
-
71749099456
-
Deep sequencing to reveal new variants in pooled DNA samples
-
Out, A.A. et al. (2009) Deep sequencing to reveal new variants in pooled DNA samples. Hum. Mutat., 30, 1703–1712.
-
(2009)
Hum. Mutat
, vol.30
, pp. 1703-1712
-
-
Out, A.A.1
-
29
-
-
0025183708
-
Basic local alignment search tool
-
Altschul, S.F. et al. (1990) Basic local alignment search tool. J. Mol. Biol., 215, 403–410.
-
(1990)
J. Mol. Biol
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
-
30
-
-
67650763443
-
Visual and statistical comparison of metagenomes
-
Mitra, S. et al. (2009) Visual and statistical comparison of metagenomes. Bioinformatics, 25, 1849–1855.
-
(2009)
Bioinformatics
, vol.25
, pp. 1849-1855
-
-
Mitra, S.1
-
31
-
-
22844444194
-
Differential detection of five mouse-infecting helicobacter species by multiplex PCR
-
Feng, S. et al. (2005) Differential detection of five mouse-infecting helicobacter species by multiplex PCR. Clin. Diagn. Lab. Immunol., 12, 531–536.
-
(2005)
Clin. Diagn. Lab. Immunol
, vol.12
, pp. 531-536
-
-
Feng, S.1
-
32
-
-
38449104720
-
Intestinal integrity and Akkermansia muciniphila, a mucin-degrading member of the intestinal microbiota present in infants, adults, and the elderly
-
Collado, M.C. et al. (2007) Intestinal integrity and Akkermansia muciniphila, a mucin-degrading member of the intestinal microbiota present in infants, adults, and the elderly. Appl. Environ. Microbiol., 73, 7767–7770.
-
(2007)
Appl. Environ. Microbiol
, vol.73
, pp. 7767-7770
-
-
Collado, M.C.1
-
33
-
-
80755152887
-
Responses of gut microbiota and glucose and lipid metabolism to prebiotics in genetic obese and diet-induced leptin-resistant mice
-
Everard, A. et al. (2011) Responses of gut microbiota and glucose and lipid metabolism to prebiotics in genetic obese and diet-induced leptin-resistant mice. Diabetes, 60, 2775–2786.
-
(2011)
Diabetes
, vol.60
, pp. 2775-2786
-
-
Everard, A.1
-
34
-
-
80755185875
-
Altered gut microbiota and endocannabinoid system tone in obese and diabetic leptin-resistant mice: impact on apelin regulation in adipose tissue
-
Geurts, L. et al. (2011) Altered gut microbiota and endocannabinoid system tone in obese and diabetic leptin-resistant mice: impact on apelin regulation in adipose tissue. Front. Microbiol., 2, 149.
-
(2011)
Front. Microbiol
, vol.2
, pp. 149
-
-
Geurts, L.1
-
35
-
-
40549106737
-
The Mucin degrader Akkermansia muciniphila is an abundant resident of the human intestinal tract
-
Derrien, M. et al. (2008) The Mucin degrader Akkermansia muciniphila is an abundant resident of the human intestinal tract. Appl. Environ. Microbiol., 74, 1646–1648.
-
(2008)
Appl. Environ. Microbiol
, vol.74
, pp. 1646-1648
-
-
Derrien, M.1
-
36
-
-
84863985588
-
Microbes inside–from diversity to function: the case of Akkermansia
-
Belzer, C. et al. (2012) Microbes inside–from diversity to function: the case of Akkermansia. ISME J., 6, 1449–1458.
-
(2012)
ISME J
, vol.6
, pp. 1449-1458
-
-
Belzer, C.1
-
37
-
-
10044221016
-
Colorectal cancers in a new mouse model of familial adenomatous polyposis: influence of genetic and environmental modifiers
-
Colnot, S. et al. (2004) Colorectal cancers in a new mouse model of familial adenomatous polyposis: influence of genetic and environmental modifiers. Lab. Invest., 84, 1619–1630.
-
(2004)
Lab. Invest
, vol.84
, pp. 1619-1630
-
-
Colnot, S.1
-
38
-
-
84897960120
-
An increase in the Akkermansia spp. population induced by metformin treatment improves glucose homeostasis in diet-induced obese mice
-
Shin, N.R. et al. (2014) An increase in the Akkermansia spp. population induced by metformin treatment improves glucose homeostasis in diet-induced obese mice. Gut, 63, 727–735.
-
(2014)
Gut
, vol.63
, pp. 727-735
-
-
Shin, N.R.1
-
39
-
-
84883813272
-
Commensal Akkermansia muciniphila exacerbates gut inflammation in Salmonella typhimurium-infected gnotobiotic mice
-
Ganesh, B.P. et al. (2013) Commensal Akkermansia muciniphila exacerbates gut inflammation in Salmonella typhimurium-infected gnotobiotic mice. PLoS One, 8, e74963.
-
(2013)
PLoS One
, vol.8
, pp. e74963
-
-
Ganesh, B.P.1
-
40
-
-
35649026345
-
Salmonella enterica serovar typhimurium exploits inflammation to compete with the intestinal microbiota
-
Stecher, B. et al. (2007) Salmonella enterica serovar typhimurium exploits inflammation to compete with the intestinal microbiota. PLoS Biol., 5, 2177–2189.
-
(2007)
PLoS Biol
, vol.5
, pp. 2177-2189
-
-
Stecher, B.1
-
41
-
-
84862260596
-
Enterococcus faecium NCIMB 10415 does not protect interleukin-10 knock-out mice from chronic gut inflammation
-
Ganesh, B.P. et al. (2012) Enterococcus faecium NCIMB 10415 does not protect interleukin-10 knock-out mice from chronic gut inflammation. Benef. Microbes, 3, 43–50.
-
(2012)
Benef. Microbes
, vol.3
, pp. 43-50
-
-
Ganesh, B.P.1
-
42
-
-
84881148921
-
Stool microbiome and metabolome differences between colorectal cancer patients and healthy adults
-
Weir, T.L. et al. (2013) Stool microbiome and metabolome differences between colorectal cancer patients and healthy adults. PLoS One, 8, e70803.
-
(2013)
PLoS One
, vol.8
, pp. e70803
-
-
Weir, T.L.1
-
43
-
-
84867745572
-
Increased rectal microbial richness is associated with the presence of colorectal adenomas in humans
-
Sanapareddy, N. et al. (2012) Increased rectal microbial richness is associated with the presence of colorectal adenomas in humans. ISME J., 6, 1858–1868.
-
(2012)
ISME J
, vol.6
, pp. 1858-1868
-
-
Sanapareddy, N.1
-
44
-
-
84897692493
-
Impact of diet on human intestinal microbiota and health
-
Salonen, A. et al. (2014) Impact of diet on human intestinal microbiota and health. Annu. Rev. Food Sci. Technol., 5, 239–262.
-
(2014)
Annu. Rev. Food Sci. Technol
, vol.5
, pp. 239-262
-
-
Salonen, A.1
-
45
-
-
84891585929
-
The gut microbiome modulates colon tumorigenesis
-
Zackular, J.P. et al. (2013) The gut microbiome modulates colon tumorigenesis. MBio, 4, e00692–e00613.
-
(2013)
MBio
, vol.4
, pp. e00692-e00613
-
-
Zackular, J.P.1
-
46
-
-
84924040920
-
Structure of the gut microbiome following colonization with human feces determines colonic tumor burden
-
Baxter, N.T. et al. (2014) Structure of the gut microbiome following colonization with human feces determines colonic tumor burden. Microbiome, 2, 20.
-
(2014)
Microbiome
, vol.2
, pp. 20
-
-
Baxter, N.T.1
|