메뉴 건너뛰기




Volumn 5, Issue 1, 2010, Pages

Site and strain-specific variation in gut microbiota profiles and metabolism in experimental mice

Author keywords

[No Author keywords available]

Indexed keywords

ANIMAL EXPERIMENT; ANIMAL MODEL; ARTICLE; BACTERIAL METABOLISM; BACTERIUM; CONTROLLED STUDY; DENATURING GRADIENT GEL ELECTROPHORESIS; EMBRYO; FECES ANALYSIS; FEMALE; GASTROINTESTINAL TRACT MICROBIOTA; HEREDITY; INBRED STRAIN; MATURATION; METABOLITE; MICROFLORA; MOTHER; MOUSE; NIDATION; NONHUMAN; POLYMERASE CHAIN REACTION; PROGENY; QUANTITATIVE ANALYSIS; REARING; SYMBIOSIS; ANIMAL; FECES; INTESTINE; MICROBIOLOGY; POLYACRYLAMIDE GEL ELECTROPHORESIS; SPECIES DIFFERENCE;

EID: 77649138063     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0008584     Document Type: Article
Times cited : (178)

References (47)
  • 1
    • 0021721543 scopus 로고
    • The digestive tract in immunocompromised patients: Importance of maintaining its resistance to colonization, especially in hospital inpatients and those taking antibiotics
    • van der Waaij D (1984) The digestive tract in immunocompromised patients: importance of maintaining its resistance to colonization, especially in hospital inpatients and those taking antibiotics. Antonie Van Leeuwenhoek 50: 745-761.
    • (1984) Antonie Van Leeuwenhoek , vol.50 , pp. 745-761
    • van der Waaij, D.1
  • 2
    • 34547685588 scopus 로고    scopus 로고
    • Importance of microbial colonization of the gut in early life to the development of immunity
    • Kelly D, King T, Aminov R (2007) Importance of microbial colonization of the gut in early life to the development of immunity. Mutat Res 622: 58-69.
    • (2007) Mutat Res , vol.622 , pp. 58-69
    • Kelly, D.1    King, T.2    Aminov, R.3
  • 3
    • 22144458070 scopus 로고    scopus 로고
    • Commensal Bacteria Shape Intestinal Immune System Development
    • 71
    • Cash H, Hooper LV (2005) Commensal Bacteria Shape Intestinal Immune System Development. ASM News 71: 77-83.
    • (2005) ASM News , pp. 77-83
    • Cash, H.1    Hooper, L.V.2
  • 4
    • 0347756655 scopus 로고    scopus 로고
    • Commensal anaerobic gut bacteria attenuate inflammation by regulating nuclear-cytoplasmic shuttling of PPAR-gamma and RelA
    • Kelly D, Campbell JI, King TP, Grant G, Jansson EA, et al. (2004) Commensal anaerobic gut bacteria attenuate inflammation by regulating nuclear-cytoplasmic shuttling of PPAR-gamma and RelA. Nat Immunol 5: 104-112.
    • (2004) Nat Immunol , vol.5 , pp. 104-112
    • Kelly, D.1    Campbell, J.I.2    King, T.P.3    Grant, G.4    Jansson, E.A.5
  • 5
    • 17844404232 scopus 로고    scopus 로고
    • Gut microorganisms, mammalian metabolism and personalized health care
    • Nicholson JK, Holmes E, Wilson ID (2005) Gut microorganisms, mammalian metabolism and personalized health care. Nat Rev Microbiol 3: 431-438.
    • (2005) Nat Rev Microbiol , vol.3 , pp. 431-438
    • Nicholson, J.K.1    Holmes, E.2    Wilson, I.D.3
  • 7
    • 67650595188 scopus 로고    scopus 로고
    • The role of gut microbiota in drug response
    • Wilson ID, Nicholson JK (2009) The role of gut microbiota in drug response. Curr Pharm Des 15: 1519-1523.
    • (2009) Curr Pharm Des , vol.15 , pp. 1519-1523
    • Wilson, I.D.1    Nicholson, J.K.2
  • 8
    • 33646198860 scopus 로고    scopus 로고
    • Pharmaco-metabonomic phenotyping and personalized drug treatment
    • Clayton TA, Lindon JC, Cloarec O, Antti H, Charuel C, et al. (2006) Pharmaco-metabonomic phenotyping and personalized drug treatment. Nature 440: 1073-1077.
    • (2006) Nature , vol.440 , pp. 1073-1077
    • Clayton, T.A.1    Lindon, J.C.2    Cloarec, O.3    Antti, H.4    Charuel, C.5
  • 9
    • 33845874101 scopus 로고    scopus 로고
    • An obesity-associated gut microbiome with increased capacity for energy harvest
    • Turnbaugh PJ, Ley RE, Mahowald MA, Magrini V, Mardis ER, et al. (2006) An obesity-associated gut microbiome with increased capacity for energy harvest. Nature 444: 1027-1031.
    • (2006) Nature , vol.444 , pp. 1027-1031
    • Turnbaugh, P.J.1    Ley, R.E.2    Mahowald, M.A.3    Magrini, V.4    Mardis, E.R.5
  • 10
    • 33845901507 scopus 로고    scopus 로고
    • Microbial ecology: Human gut microbes associated with obesity
    • Ley RE, Turnbaugh PJ, Klein S, Gordon JI (2006) Microbial ecology: human gut microbes associated with obesity. Nature 444: 1022-1023.
    • (2006) Nature , vol.444 , pp. 1022-1023
    • Ley, R.E.1    Turnbaugh, P.J.2    Klein, S.3    Gordon, J.I.4
  • 11
    • 0142026205 scopus 로고    scopus 로고
    • Inaugural Article: Honor thy symbionts
    • Xu J, Gordon JI (2003) Inaugural Article: Honor thy symbionts. Proc Natl Acad Sci U S A 100: 10452-10459.
    • (2003) Proc Natl Acad Sci U S A , vol.100 , pp. 10452-10459
    • Xu, J.1    Gordon, J.I.2
  • 12
    • 0037470975 scopus 로고    scopus 로고
    • A genomic view of the human-Bacteroides thetaiotaomicron symbiosis
    • Xu J, Bjursell MK, Himrod J, Deng S, Carmichael LK, et al. (2003) A genomic view of the human-Bacteroides thetaiotaomicron symbiosis. Science 299: 2074-2076.
    • (2003) Science , vol.299 , pp. 2074-2076
    • Xu, J.1    Bjursell, M.K.2    Himrod, J.3    Deng, S.4    Carmichael, L.K.5
  • 14
  • 15
    • 35548944019 scopus 로고    scopus 로고
    • Immune responses to commensal and environmental microbes
    • Pamer EG (2007) Immune responses to commensal and environmental microbes. Nat Immunol 8: 1173-1178.
    • (2007) Nat Immunol , vol.8 , pp. 1173-1178
    • Pamer, E.G.1
  • 16
    • 57749205957 scopus 로고    scopus 로고
    • Intra-individual diversity and similarity of salivary and faecal microbiota
    • Maukonen J, Matto J, Suihko ML, Saarela M (2008) Intra-individual diversity and similarity of salivary and faecal microbiota. J Med Microbiol 57: 1560-1568.
    • (2008) J Med Microbiol , vol.57 , pp. 1560-1568
    • Maukonen, J.1    Matto, J.2    Suihko, M.L.3    Saarela, M.4
  • 17
    • 0036300743 scopus 로고    scopus 로고
    • Mucosa-associated bacteria in the human gastrointestinal tract are uniformly distributed along the colon and differ from the community recovered from feces
    • Zoetendal EG, von Wright A, Vilpponen-Salmela T, Ben-Amor K, Akkermans AD, et al. (2002) Mucosa-associated bacteria in the human gastrointestinal tract are uniformly distributed along the colon and differ from the community recovered from feces. Appl Environ Microbiol 68: 3401-3407.
    • (2002) Appl Environ Microbiol , vol.68 , pp. 3401-3407
    • Zoetendal, E.G.1    von Wright, A.2    Vilpponen-Salmela, T.3    Ben-Amor, K.4    Akkermans, A.D.5
  • 18
    • 0034987688 scopus 로고    scopus 로고
    • Molecular ecological analysis of dietary and antibiotic-induced alterations of the mouse intestinal microbiota
    • McCracken VJ, Simpson JM, Mackie RI, Gaskins HR (2001) Molecular ecological analysis of dietary and antibiotic-induced alterations of the mouse intestinal microbiota. J Nutr 131: 1862-1870.
    • (2001) J Nutr , vol.131 , pp. 1862-1870
    • McCracken, V.J.1    Simpson, J.M.2    Mackie, R.I.3    Gaskins, H.R.4
  • 19
    • 56149113952 scopus 로고    scopus 로고
    • Gender difference in the composition of fecal flora in laboratory mice, as detected by denaturing gradient gel electrophoresis (DGGE)
    • Fushuku S, Fukuda K (2008) Gender difference in the composition of fecal flora in laboratory mice, as detected by denaturing gradient gel electrophoresis (DGGE). Exp Anim 57: 489-493.
    • (2008) Exp Anim , vol.57 , pp. 489-493
    • Fushuku, S.1    Fukuda, K.2
  • 21
    • 3242664636 scopus 로고    scopus 로고
    • Recognition of commensal microflora by toll-like receptors is required for intestinal homeostasis
    • Rakoff-Nahoum S, Paglino J, Eslami-Varzaneh F, Edberg S, Medzhitov R (2004) Recognition of commensal microflora by toll-like receptors is required for intestinal homeostasis. Cell 118: 229-241.
    • (2004) Cell , vol.118 , pp. 229-241
    • Rakoff-Nahoum, S.1    Paglino, J.2    Eslami-Varzaneh, F.3    Edberg, S.4    Medzhitov, R.5
  • 22
    • 16844387487 scopus 로고    scopus 로고
    • Bacterial modulation of mucosal innate immunity
    • Kelly D, Conway S (2005) Bacterial modulation of mucosal innate immunity. Mol Immunol 42: 895-901.
    • (2005) Mol Immunol , vol.42 , pp. 895-901
    • Kelly, D.1    Conway, S.2
  • 23
    • 17044385039 scopus 로고    scopus 로고
    • TLR signaling in the gut in health and disease
    • Abreu MT, Fukata M, Arditi M (2005) TLR signaling in the gut in health and disease. J Immunol 174: 4453-4460.
    • (2005) J Immunol , vol.174 , pp. 4453-4460
    • Abreu, M.T.1    Fukata, M.2    Arditi, M.3
  • 24
    • 0036742287 scopus 로고    scopus 로고
    • Variation in human intestinal microbiota with age
    • Hopkins MJ, Sharp R, Macfarlane GT (2002) Variation in human intestinal microbiota with age. Dig Liver Dis 34 Suppl 2: S12-18.
    • (2002) Dig Liver Dis , vol.34 , Issue.SUPPL. 2
    • Hopkins, M.J.1    Sharp, R.2    Macfarlane, G.T.3
  • 25
    • 0141942752 scopus 로고    scopus 로고
    • Intestinal microflora in early infancy: Composition and development
    • Fanaro S, Chierici R, Guerrini P, Vigi V (2003) Intestinal microflora in early infancy: composition and development. Acta Paediatr Suppl 91: 48-55.
    • (2003) Acta Paediatr , Issue.SUPPL. 91 , pp. 48-55
    • Fanaro, S.1    Chierici, R.2    Guerrini, P.3    Vigi, V.4
  • 26
    • 12244292700 scopus 로고    scopus 로고
    • Monitoring of antibiotic-induced alterations in the human intestinal microflora and detection of probiotic strains by use of terminal restriction fragment length polymorphism
    • Jernberg C, Sullivan A, Edlund C, Jansson JK (2005) Monitoring of antibiotic-induced alterations in the human intestinal microflora and detection of probiotic strains by use of terminal restriction fragment length polymorphism. Appl Environ Microbiol 71: 501-506.
    • (2005) Appl Environ Microbiol , vol.71 , pp. 501-506
    • Jernberg, C.1    Sullivan, A.2    Edlund, C.3    Jansson, J.K.4
  • 27
    • 0036173427 scopus 로고    scopus 로고
    • Impact of combinations of antineoplastic drugs on intestinal microflora in 9 patients with leukaemia
    • Nyhlen A, Ljungberg B, Nilsson-Ehle I, Nord CE (2002) Impact of combinations of antineoplastic drugs on intestinal microflora in 9 patients with leukaemia. Scand J Infect Dis 34: 17-21.
    • (2002) Scand J Infect Dis , vol.34 , pp. 17-21
    • Nyhlen, A.1    Ljungberg, B.2    Nilsson-Ehle, I.3    Nord, C.E.4
  • 28
    • 34247481362 scopus 로고    scopus 로고
    • Molecular fingerprinting of the fecal microbiota of children raised according to different lifestyles
    • Dicksved J, Floistrup H, Bergstrom A, Rosenquist M, Pershagen G, et al. (2007) Molecular fingerprinting of the fecal microbiota of children raised according to different lifestyles. Appl Environ Microbiol 73: 2284-2289.
    • (2007) Appl Environ Microbiol , vol.73 , pp. 2284-2289
    • Dicksved, J.1    Floistrup, H.2    Bergstrom, A.3    Rosenquist, M.4    Pershagen, G.5
  • 29
    • 28944442466 scopus 로고    scopus 로고
    • Investigations into the influence of host genetics on the predominant eubacteria in the faecal microflora of children
    • Stewart JA, Chadwick VS, Murray A (2005) Investigations into the influence of host genetics on the predominant eubacteria in the faecal microflora of children. J Med Microbiol 54: 1239-1242.
    • (2005) J Med Microbiol , vol.54 , pp. 1239-1242
    • Stewart, J.A.1    Chadwick, V.S.2    Murray, A.3
  • 32
    • 0141868955 scopus 로고    scopus 로고
    • Development of bacterial and bifidobacterial communities in feces of newborn babies
    • Favier CF, de Vos WM, Akkermans AD (2003) Development of bacterial and bifidobacterial communities in feces of newborn babies. Anaerobe 9: 219-229.
    • (2003) Anaerobe , vol.9 , pp. 219-229
    • Favier, C.F.1    de Vos, W.M.2    Akkermans, A.D.3
  • 33
    • 59949097833 scopus 로고    scopus 로고
    • Isolation of bifidobacteria from breast milk and assessment of the bifidobacterial population by PCR-denaturing gradient gel electrophoresis and quantitative real-time PCR
    • Martin R, Jimenez E, Heilig H, Fernandez L, Marin ML, et al. (2009) Isolation of bifidobacteria from breast milk and assessment of the bifidobacterial population by PCR-denaturing gradient gel electrophoresis and quantitative real-time PCR. Appl Environ Microbiol 75: 965-969.
    • (2009) Appl Environ Microbiol , vol.75 , pp. 965-969
    • Martin, R.1    Jimenez, E.2    Heilig, H.3    Fernandez, L.4    Marin, M.L.5
  • 35
    • 56849106496 scopus 로고    scopus 로고
    • The pervasive effects of an antibiotic on the human gut microbiota, as revealed by deep 16S rRNA sequencing
    • Dethlefsen L, Huse S, Sogin ML, Relman DA (2008) The pervasive effects of an antibiotic on the human gut microbiota, as revealed by deep 16S rRNA sequencing. PLoS Biol 6: e280.
    • (2008) PLoS Biol , vol.6
    • Dethlefsen, L.1    Huse, S.2    Sogin, M.L.3    Relman, D.A.4
  • 36
    • 0029586031 scopus 로고
    • Tolerance exists towards resident intestinal flora but is broken in active inflammatory bowel disease (IBD)
    • Duchmann R, Kaiser I, Hermann E, Mayet W, Ewe K, et al. (1995) Tolerance exists towards resident intestinal flora but is broken in active inflammatory bowel disease (IBD). Clin Exp Immunol 102: 448-455.
    • (1995) Clin Exp Immunol , vol.102 , pp. 448-455
    • Duchmann, R.1    Kaiser, I.2    Hermann, E.3    Mayet, W.4    Ewe, K.5
  • 37
    • 66749118301 scopus 로고    scopus 로고
    • Top-down systems biology modeling of host metabotype-microbiome associations in obese rodents
    • Waldram A, Holmes E, Wang Y, Rantalainen M, Wilson ID, et al. (2009) Top-down systems biology modeling of host metabotype-microbiome associations in obese rodents. J Proteome Res 8: 2361-2375.
    • (2009) J Proteome Res , vol.8 , pp. 2361-2375
    • Waldram, A.1    Holmes, E.2    Wang, Y.3    Rantalainen, M.4    Wilson, I.D.5
  • 38
    • 0015948426 scopus 로고
    • Maturation of the humoral immune response in mice
    • Spear PG, Edelman GM (1974) Maturation of the humoral immune response in mice. J Exp Med 139: 249-263.
    • (1974) J Exp Med , vol.139 , pp. 249-263
    • Spear, P.G.1    Edelman, G.M.2
  • 39
    • 0031839564 scopus 로고    scopus 로고
    • Effect of diet on the urinary excretion of hippuric acid and other dietary-derived aromatics in rat. A complex interaction between diet, gut microflora and substrate specificity
    • Phipps AN, Stewart J, Wright B, Wilson ID (1998) Effect of diet on the urinary excretion of hippuric acid and other dietary-derived aromatics in rat. A complex interaction between diet, gut microflora and substrate specificity. Xenobiotica 28: 527-537.
    • (1998) Xenobiotica , vol.28 , pp. 527-537
    • Phipps, A.N.1    Stewart, J.2    Wright, B.3    Wilson, I.D.4
  • 40
    • 70149096873 scopus 로고    scopus 로고
    • Pharmacometabonomic identification of a significant host-microbiome metabolic interaction affecting human drug metabolism
    • Clayton TA, Baker D, Lindon JC, Everett JR, Nicholson JK (2009) Pharmacometabonomic identification of a significant host-microbiome metabolic interaction affecting human drug metabolism. Proc Natl Acad Sci USA 106: 14728-14733.
    • (2009) Proc Natl Acad Sci USA , vol.106 , pp. 14728-14733
    • Clayton, T.A.1    Baker, D.2    Lindon, J.C.3    Everett, J.R.4    Nicholson, J.K.5
  • 41
    • 33847637539 scopus 로고    scopus 로고
    • Hepatotoxin-induced hypertyrosinemia and its toxicological significance
    • Clayton TA, Lindon JC, Everett JR, Charuel C, Hanton G, et al. (2007) Hepatotoxin-induced hypertyrosinemia and its toxicological significance. Arch Toxicol 81: 201-210.
    • (2007) Arch Toxicol , vol.81 , pp. 201-210
    • Clayton, T.A.1    Lindon, J.C.2    Everett, J.R.3    Charuel, C.4    Hanton, G.5
  • 42
    • 33749997498 scopus 로고    scopus 로고
    • Reciprocal gut microbiota transplants from zebrafish and mice to germ-free recipients reveal host habitat selection
    • Rawls JF, Mahowald MA, Ley RE, Gordon JI (2006) Reciprocal gut microbiota transplants from zebrafish and mice to germ-free recipients reveal host habitat selection. Cell 127: 423-433.
    • (2006) Cell , vol.127 , pp. 423-433
    • Rawls, J.F.1    Mahowald, M.A.2    Ley, R.E.3    Gordon, J.I.4
  • 44
    • 9644268216 scopus 로고    scopus 로고
    • Development of an extensive set of 16S rDNA-targeted primers for quantification of pathogenic and indigenous bacteria in faecal samples by real-time PCR
    • Rinttila T, Kassinen A, Malinen E, Krogius L, Palva A (2004) Development of an extensive set of 16S rDNA-targeted primers for quantification of pathogenic and indigenous bacteria in faecal samples by real-time PCR. J Appl Microbiol 97: 1166-1177.
    • (2004) J Appl Microbiol , vol.97 , pp. 1166-1177
    • Rinttila, T.1    Kassinen, A.2    Malinen, E.3    Krogius, L.4    Palva, A.5
  • 45
    • 2942592005 scopus 로고    scopus 로고
    • Characterization of bacterial communities in feces from healthy elderly volunteers and hospitalized elderly patients by using real-time PCR and effects of antibiotic treatment on the fecal microbiota
    • Bartosch S, Fite A, Macfarlane GT, McMurdo ME (2004) Characterization of bacterial communities in feces from healthy elderly volunteers and hospitalized elderly patients by using real-time PCR and effects of antibiotic treatment on the fecal microbiota. Appl Environ Microbiol 70: 3575-3581.
    • (2004) Appl Environ Microbiol , vol.70 , pp. 3575-3581
    • Bartosch, S.1    Fite, A.2    Macfarlane, G.T.3    McMurdo, M.E.4
  • 46
    • 22144442469 scopus 로고    scopus 로고
    • Quantitative detection of Clostridium perfringens in the broiler fowl gastrointestinal tract by real-time PCR
    • Wise MG, Siragusa GR (2005) Quantitative detection of Clostridium perfringens in the broiler fowl gastrointestinal tract by real-time PCR. Appl Environ Microbiol 71: 3911-3916.
    • (2005) Appl Environ Microbiol , vol.71 , pp. 3911-3916
    • Wise, M.G.1    Siragusa, G.R.2
  • 47
    • 67149141502 scopus 로고    scopus 로고
    • Diet-induced metabolic improvements in a hamster model of hypercholesterolemia are strongly linked to alterations of the gut microbiota
    • Martinez I, Wallace G, Zhang C, Legge R, Benson AK, et al. (2009) Diet-induced metabolic improvements in a hamster model of hypercholesterolemia are strongly linked to alterations of the gut microbiota. Appl Environ Microbiol 75: 4175-4184.
    • (2009) Appl Environ Microbiol , vol.75 , pp. 4175-4184
    • Martinez, I.1    Wallace, G.2    Zhang, C.3    Legge, R.4    Benson, A.K.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.