-
1
-
-
0034705397
-
A primitive T cellindependent mechanism of intestinal mucosal IgA responses to commensal bacteria
-
Macpherson AJ, Gatto D, Sainsbury E, et al. A primitive T cellindependent mechanism of intestinal mucosal IgA responses to commensal bacteria. Science. 2000;288:2222.
-
(2000)
Science.
, vol.288
, pp. 2222
-
-
Macpherson, A.J.1
Gatto, D.2
Sainsbury, E.3
-
2
-
-
2942625911
-
Interactions between commensal intestinal bacteria and the immune system
-
Macpherson AJ, Harris NL. Interactions between commensal intestinal bacteria and the immune system. Nat Rev Immunol. 2004;4:478-485.
-
(2004)
Nat Rev Immunol.
, vol.4
, pp. 478-485
-
-
Macpherson, A.J.1
Harris, N.L.2
-
3
-
-
54449083567
-
The inner of the two Muc2 mucin-Dependent mucus layers in colon is devoid of bacteria
-
Johansson ME, Phillipson M, Petersson J, et al. The inner of the two Muc2 mucin-Dependent mucus layers in colon is devoid of bacteria. Proc Natl Acad Sci U S A. 2008;105:15064-15069.
-
(2008)
Proc Natl Acad Sci U S A.
, vol.105
, pp. 15064-15069
-
-
Johansson, M.E.1
Phillipson, M.2
Petersson, J.3
-
4
-
-
33745746660
-
Muc2-Deficient mice spontaneously develop colitis, indicating that MUC2 is critical for colonic protection
-
Van der Sluis M, De Koning BA, De Bruijn AC, et al. Muc2-Deficient mice spontaneously develop colitis, indicating that MUC2 is critical for colonic protection. Gastroenterology. 2006;131:117-129.
-
(2006)
Gastroenterology.
, vol.131
, pp. 117-129
-
-
Van Der Sluis, M.1
De Koning, B.A.2
De Bruijn, A.C.3
-
6
-
-
80052748811
-
Colonic gene expression patterns of mucin Muc2 knockout mice reveal various phases in colitis development
-
Lu P, Burger-van Paassen N, van der Sluis M, et al. Colonic gene expression patterns of mucin Muc2 knockout mice reveal various phases in colitis development. Inflamm Bowel Dis. 2011;17:2047-2057.
-
(2011)
Inflamm Bowel Dis.
, vol.17
, pp. 2047-2057
-
-
Lu, P.1
Burger-Van Paassen, N.2
Van Der Sluis, M.3
-
7
-
-
84923386270
-
IL-22-STAT3 pathway plays a key role in the maintenance of ileal homeostasis in mice lacking secreted mucus barrier
-
Sovran B, Loonen LM, Lu P, et al. IL-22-STAT3 pathway plays a key role in the maintenance of ileal homeostasis in mice lacking secreted mucus barrier. Inflamm Bowel Dis. 2015;21:531-542.
-
(2015)
Inflamm Bowel Dis.
, vol.21
, pp. 531-542
-
-
Sovran, B.1
Loonen, L.M.2
Lu, P.3
-
8
-
-
84872094450
-
The goblet cell: A key player in ischaemiareperfusion injury
-
Johansson MEV, Hansson GC. The goblet cell: a key player in ischaemiareperfusion injury. Gut. 2013;62:188-189.
-
(2013)
Gut.
, vol.62
, pp. 188-189
-
-
Johansson, M.E.V.1
Hansson, G.C.2
-
9
-
-
70949107842
-
Mechanisms of disease inflammatory bowel disease
-
Abraham C, Cho JH. Mechanisms of disease inflammatory bowel disease. N Engl J Med. 2009;361:2066-2078.
-
(2009)
N Engl J Med.
, vol.361
, pp. 2066-2078
-
-
Abraham, C.1
Cho, J.H.2
-
10
-
-
34047167850
-
Comparative study of the intestinal mucus barrier in normal and inflamed colon
-
Swidsinski A, Loening-Baucke V, Theissig F, et al. Comparative study of the intestinal mucus barrier in normal and inflamed colon. Gut. 2007;56:343-350.
-
(2007)
Gut.
, vol.56
, pp. 343-350
-
-
Swidsinski, A.1
Loening-Baucke, V.2
Theissig, F.3
-
11
-
-
84872947175
-
Mucin function in inflammatory bowel disease an update
-
Boltin D, Perets TT, Vilkin A, et al. Mucin function in inflammatory bowel disease an update. J Clin Gastroenterol. 2013;47:106-111.
-
(2013)
J Clin Gastroenterol.
, vol.47
, pp. 106-111
-
-
Boltin, D.1
Perets, T.T.2
Vilkin, A.3
-
12
-
-
79952763660
-
Epithelial crosstalk at the microbiota-mucosal interface
-
Wells JM, Rossi O, Meijerink M, et al. Epithelial crosstalk at the microbiota-mucosal interface. Proc Natl Acad Sci U S A. 2011;108: 4607-4614.
-
(2011)
Proc Natl Acad Sci U S A.
, vol.108
, pp. 4607-4614
-
-
Wells, J.M.1
Rossi, O.2
Meijerink, M.3
-
13
-
-
33947492645
-
Comparative analysis of colonic gene expression of three experimental colitis models mimicking inflammatory bowel disease
-
te Velde AA, de Kort F, Sterrenburg E, et al. Comparative analysis of colonic gene expression of three experimental colitis models mimicking inflammatory bowel disease. Inflamm Bowel Dis. 2007;13:325-330.
-
(2007)
Inflamm Bowel Dis.
, vol.13
, pp. 325-330
-
-
Te Velde, A.A.1
De Kort, F.2
Sterrenburg, E.3
-
14
-
-
35348857386
-
Molecular-phylogenetic characterization of microbial community imbalances in human inflammatory bowel diseases
-
Frank DN, Amand ALS, Feldman RA, et al. Molecular-phylogenetic characterization of microbial community imbalances in human inflammatory bowel diseases. Proc Natl Acad Sci U S A. 2007;104:13780-13785.
-
(2007)
Proc Natl Acad Sci U S A.
, vol.104
, pp. 13780-13785
-
-
Frank, D.N.1
Amand, A.L.S.2
Feldman, R.A.3
-
15
-
-
2342442430
-
Reduction in diversity of the colonic mucosa associated bacterial microflora in patients with active inflammatory bowel disease
-
Ott SJ, Musfeldt M, Wenderoth DF, et al. Reduction in diversity of the colonic mucosa associated bacterial microflora in patients with active inflammatory bowel disease. Gut. 2004;53:685-693.
-
(2004)
Gut.
, vol.53
, pp. 685-693
-
-
Ott, S.J.1
Musfeldt, M.2
Wenderoth, D.F.3
-
16
-
-
84903376660
-
Gut microbiome composition and function in experimental colitis during active disease and treatment-induced remission
-
Rooks MG, Veiga P, Wardwell-Scott LH, et al. Gut microbiome composition and function in experimental colitis during active disease and treatment-induced remission. ISME J. 2014;8:1403-1417.
-
(2014)
ISME J.
, vol.8
, pp. 1403-1417
-
-
Rooks, M.G.1
Veiga, P.2
Wardwell-Scott, L.H.3
-
17
-
-
84881559009
-
Faecalibacterium prausnitzii and human intestinal health
-
Miquel S, Martin R, Rossi O, et al. Faecalibacterium prausnitzii and human intestinal health. Curr Opin Microbiol. 2013;16:255-261.
-
(2013)
Curr Opin Microbiol.
, vol.16
, pp. 255-261
-
-
Miquel, S.1
Martin, R.2
Rossi, O.3
-
18
-
-
79953748870
-
Dysbiosis of the faecal microbiota in patients with Crohn?s disease and their unaffected relatives
-
Joossens M, Huys G, Cnockaert M, et al. Dysbiosis of the faecal microbiota in patients with Crohn?s disease and their unaffected relatives. Gut. 2011;60:631-637.
-
(2011)
Gut.
, vol.60
, pp. 631-637
-
-
Joossens, M.1
Huys, G.2
Cnockaert, M.3
-
19
-
-
79955554300
-
The commensal microbiota and enteropathogens in the pathogenesis of inflammatory bowel diseases
-
Chassaing B, Darfeuille-Michaud A. The commensal microbiota and enteropathogens in the pathogenesis of inflammatory bowel diseases. Gastroenterology. 2011;140:1720-1728.
-
(2011)
Gastroenterology.
, vol.140
, pp. 1720-1728
-
-
Chassaing, B.1
Darfeuille-Michaud, A.2
-
20
-
-
75149167834
-
Molecular mechanisms of enterotoxigenic Escherichia coli infection
-
Fleckenstein JM, Hardwidge PR, Munson GP, et al. Molecular mechanisms of enterotoxigenic Escherichia coli infection. Microbes Infect. 2010;12:89-98.
-
(2010)
Microbes Infect.
, vol.12
, pp. 89-98
-
-
Fleckenstein, J.M.1
Hardwidge, P.R.2
Munson, G.P.3
-
21
-
-
84886795788
-
Microbiota-mediated colonization resistance against intestinal pathogens
-
Buffie CG, Pamer EG. Microbiota-mediated colonization resistance against intestinal pathogens. Nat Rev Immunol. 2013;13:790-801.
-
(2013)
Nat Rev Immunol.
, vol.13
, pp. 790-801
-
-
Buffie, C.G.1
Pamer, E.G.2
-
22
-
-
84873513423
-
Host-Derived nitrate boosts growth of E. Coli in the inflamed gut
-
Winter SE, Winter MG, Xavier MN, et al. Host-Derived nitrate boosts growth of E. coli in the inflamed gut. Science. 2013;339:708-711.
-
(2013)
Science.
, vol.339
, pp. 708-711
-
-
Winter, S.E.1
Winter, M.G.2
Xavier, M.N.3
-
23
-
-
80052365606
-
Pathobionts of the gastrointestinal microbiota and inflammatory disease
-
Chow J, Tang H, Mazmanian SK. Pathobionts of the gastrointestinal microbiota and inflammatory disease. Curr Opin Immunol. 2011;23: 473-480.
-
(2011)
Curr Opin Immunol.
, vol.23
, pp. 473-480
-
-
Chow, J.1
Tang, H.2
Mazmanian, S.K.3
-
24
-
-
84864566664
-
The colitis-Associated transcriptional profile of commensal Bacteroides thetaiotaomicron enhances adaptive immune responses to a bacterial antigen
-
Hansen JJ, Huang Y, Peterson DA, et al. The colitis-Associated transcriptional profile of commensal Bacteroides thetaiotaomicron enhances adaptive immune responses to a bacterial antigen. PLoS One. 2012;7:e42645.
-
(2012)
PLoS One.
, vol.7
, pp. e42645
-
-
Hansen, J.J.1
Huang, Y.2
Peterson, D.A.3
-
25
-
-
79956078164
-
Commensal Bacteroides species induce colitis in host-genotype-specific fashion in a mouse model of inflammatory bowel disease
-
Bloom SM, Bijanki VN, Nava GM, et al. Commensal Bacteroides species induce colitis in host-genotype-specific fashion in a mouse model of inflammatory bowel disease. Cell Host Microbe. 2011;9:390-403.
-
(2011)
Cell Host Microbe.
, vol.9
, pp. 390-403
-
-
Bloom, S.M.1
Bijanki, V.N.2
Nava, G.M.3
-
26
-
-
44349164525
-
Imbalance in intestinal microflora constitution could be involved in the pathogenesis of inflammatory bowel disease
-
Takaishi H, Matsuki T, Nakazawa A, et al. Imbalance in intestinal microflora constitution could be involved in the pathogenesis of inflammatory bowel disease. Int J Med Microbiol. 2008;298:463-472.
-
(2008)
Int J Med Microbiol.
, vol.298
, pp. 463-472
-
-
Takaishi, H.1
Matsuki, T.2
Nakazawa, A.3
-
27
-
-
33750956239
-
Differences between tissueassociated intestinal microfloras of patients with Crohn?s disease and ulcerative colitis
-
Gophna U, Sommerfeld K, Gophna S, et al. Differences between tissueassociated intestinal microfloras of patients with Crohn?s disease and ulcerative colitis. J Clin Microbiol. 2006;44:4136-4141.
-
(2006)
J Clin Microbiol.
, vol.44
, pp. 4136-4141
-
-
Gophna, U.1
Sommerfeld, K.2
Gophna, S.3
-
28
-
-
33747050143
-
The bacteriology of biopsies differs between newly diagnosed, untreated, Crohn?s disease and ulcerative colitis patients
-
Bibiloni R, Mangold M, Madsen KL, et al. The bacteriology of biopsies differs between newly diagnosed, untreated, Crohn?s disease and ulcerative colitis patients. J Med Microbiol. 2006;55:1141-1149.
-
(2006)
J Med Microbiol.
, vol.55
, pp. 1141-1149
-
-
Bibiloni, R.1
Mangold, M.2
Madsen, K.L.3
-
29
-
-
57649179488
-
Faecal microbiota profile of Crohn?s disease determined by terminal restriction fragment length polymorphism analysis
-
Andoh A, Tsujikawa T, Sasaki M, et al. Faecal microbiota profile of Crohn?s disease determined by terminal restriction fragment length polymorphism analysis. Aliment Pharmacol Ther. 2009;29:75-82.
-
(2009)
Aliment Pharmacol Ther.
, vol.29
, pp. 75-82
-
-
Andoh, A.1
Tsujikawa, T.2
Sasaki, M.3
-
30
-
-
0036500996
-
Colorectal Cancer in mice genetically deficient in the mucin Muc2
-
Velcich A, Yang W, Heyer J, et al. Colorectal Cancer in mice genetically deficient in the mucin Muc2. Science. 2002;295:1726-1729.
-
(2002)
Science.
, vol.295
, pp. 1726-1729
-
-
Velcich, A.1
Yang, W.2
Heyer, J.3
-
31
-
-
0023626113
-
Periodic acid-Schiff-Alcian blue: A method for the differential staining of glycoproteins
-
Yamabayashi S. Periodic acid-Schiff-Alcian blue: a method for the differential staining of glycoproteins. Histochem J. 1987;19:565-571.
-
(1987)
Histochem J.
, vol.19
, pp. 565-571
-
-
Yamabayashi, S.1
-
32
-
-
80755185875
-
Altered gut microbiota and endocannabinoid system tone in obese and diabetic leptin-resistant mice: Impact on apelin regulation in adipose tissue
-
Geurts L, Lazarevic V, Derrien M, et al. Altered gut microbiota and endocannabinoid system tone in obese and diabetic leptin-resistant mice: impact on apelin regulation in adipose tissue. Front Microbiol. 2011;2:149.
-
(2011)
Front Microbiol.
, vol.2
, pp. 149
-
-
Geurts, L.1
Lazarevic, V.2
Derrien, M.3
-
33
-
-
33846515112
-
Partial least squares: A versatile tool for the analysis of high-Dimensional genomic data
-
Boulesteix AL, Strimmer K. Partial least squares: a versatile tool for the analysis of high-Dimensional genomic data. Brief Bioinform. 2007;8:32-44.
-
(2007)
Brief Bioinform.
, vol.8
, pp. 32-44
-
-
Boulesteix, A.L.1
Strimmer, K.2
-
34
-
-
84938547558
-
Comparison of the effects of five dietary fibers on mucosal transcriptional profiles, and luminal microbiota composition and SCFA concentrations in murine colon
-
Lange K, Hugenholtz F, Jonathan MC, et al. Comparison of the effects of five dietary fibers on mucosal transcriptional profiles, and luminal microbiota composition and SCFA concentrations in murine colon. Mol Nutr Food Res. 2015;59:1590-1602.
-
(2015)
Mol Nutr Food Res.
, vol.59
, pp. 1590-1602
-
-
Lange, K.1
Hugenholtz, F.2
Jonathan, M.C.3
-
35
-
-
60849113429
-
Sparse canonical methods for biological data integration: Application to a cross-platform study
-
Le Cao KA, Martin PG, Robert-Granie C, et al. Sparse canonical methods for biological data integration: application to a cross-platform study. BMC Bioinformatics. 2009;10:34.
-
(2009)
BMC Bioinformatics.
, vol.10
, pp. 34
-
-
Le Cao, K.A.1
Martin, P.G.2
Robert-Granie, C.3
-
36
-
-
84876289904
-
Visualising associations between paired omics data sets
-
Gonzalez I, Cao KA, Davis MJ, et al. Visualising associations between paired ?omics? data sets. BioData Min. 2012;5:19.
-
(2012)
BioData Min.
, vol.5
, pp. 19
-
-
Gonzalez, I.1
Cao, K.A.2
Davis, M.J.3
-
37
-
-
70350694448
-
IntegrOmics: An R package to unravel relationships between two omics datasets
-
Le Cao KA, Gonzalez I, Dejean S. integrOmics: an R package to unravel relationships between two omics datasets. Bioinformatics. 2009;25: 2855-2856.
-
(2009)
Bioinformatics.
, vol.25
, pp. 2855-2856
-
-
Le Cao, K.A.1
Gonzalez, I.2
Dejean, S.3
-
38
-
-
27344435774
-
Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles
-
Subramanian A, Tamayo P, Mootha VK, et al. Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles. Proc Natl Acad Sci U S A. 2005;102:15545-15550.
-
(2005)
Proc Natl Acad Sci U S A.
, vol.102
, pp. 15545-15550
-
-
Subramanian, A.1
Tamayo, P.2
Mootha, V.K.3
-
39
-
-
84875367117
-
Gut bacteria-host metabolic interplay during conventionalisation of the mouse germfree colon
-
El Aidy S, Derrien M, Merrifield CA, et al. Gut bacteria-host metabolic interplay during conventionalisation of the mouse germfree colon. ISME J. 2013;7:743-755.
-
(2013)
ISME J.
, vol.7
, pp. 743-755
-
-
El Aidy, S.1
Derrien, M.2
Merrifield, C.A.3
-
40
-
-
77958509786
-
The role of mucosal immunity and host genetics in defining intestinal commensal bacteria
-
Hansen J, Gulati A, Sartor RB. The role of mucosal immunity and host genetics in defining intestinal commensal bacteria. Curr Opin Gastroenterol. 2010;26:564-571.
-
(2010)
Curr Opin Gastroenterol.
, vol.26
, pp. 564-571
-
-
Hansen, J.1
Gulati, A.2
Sartor, R.B.3
-
41
-
-
84899484295
-
Longitudinal study of murine microbiota activity and interactions with the host during acute inflammation and recovery
-
Schwab C, Berry D, Rauch I, et al. Longitudinal study of murine microbiota activity and interactions with the host during acute inflammation and recovery. ISME J. 2014;8:1101-1114.
-
(2014)
ISME J.
, vol.8
, pp. 1101-1114
-
-
Schwab, C.1
Berry, D.2
Rauch, I.3
-
42
-
-
0025633436
-
Spontaneous inflammatory disease in transgenic rats expressing HLA-B27 and human beta 2m: An animal model of HLA-B27-Associated human disorders
-
Hammer RE, Maika SD, Richardson JA, et al. Spontaneous inflammatory disease in transgenic rats expressing HLA-B27 and human beta 2m: an animal model of HLA-B27-Associated human disorders. Cell. 1990;63: 1099-1112.
-
(1990)
Cell.
, vol.63
, pp. 1099-1112
-
-
Hammer, R.E.1
Maika, S.D.2
Richardson, J.A.3
-
43
-
-
9544226450
-
Normal luminal bacteria, especially Bacteroides species, mediate chronic colitis, gastritis, and arthritis in HLA-B27/human beta2 microglobulin transgenic rats
-
Rath HC, Herfarth HH, Ikeda JS, et al. Normal luminal bacteria, especially Bacteroides species, mediate chronic colitis, gastritis, and arthritis in HLA-B27/human beta2 microglobulin transgenic rats. J Clin Invest. 1996; 98:945-953.
-
(1996)
J Clin Invest.
, vol.98
, pp. 945-953
-
-
Rath, H.C.1
Herfarth, H.H.2
Ikeda, J.S.3
-
44
-
-
0032984363
-
Differential induction of colitis and gastritis in HLA-B27 transgenic rats selectively colonized with Bacteroides vulgatus or Escherichia coli
-
Rath HC, Wilson KH, Sartor RB. Differential induction of colitis and gastritis in HLA-B27 transgenic rats selectively colonized with Bacteroides vulgatus or Escherichia coli. Infect Immun. 1999;67:2969-2974.
-
(1999)
Infect Immun.
, vol.67
, pp. 2969-2974
-
-
Rath, H.C.1
Wilson, K.H.2
Sartor, R.B.3
-
45
-
-
84907597189
-
Bacterial sensor Nod2 prevents inflammation of the small intestine by restricting the expansion of the commensal Bacteroides vulgatus
-
Ramanan D, Tang MS, Bowcutt R, et al. Bacterial sensor Nod2 prevents inflammation of the small intestine by restricting the expansion of the commensal Bacteroides vulgatus. Immunity. 2014;41:311-324.
-
(2014)
Immunity.
, vol.41
, pp. 311-324
-
-
Ramanan, D.1
Tang, M.S.2
Bowcutt, R.3
-
46
-
-
77954607064
-
A pathobiont of the microbiota balances host colonization and intestinal inflammation
-
Chow J, Mazmanian SK. A pathobiont of the microbiota balances host colonization and intestinal inflammation. Cell Host Microbe. 2010;7: 265-276.
-
(2010)
Cell Host Microbe.
, vol.7
, pp. 265-276
-
-
Chow, J.1
Mazmanian, S.K.2
-
47
-
-
84923273687
-
Antimicrobial peptide resistance mediates resilience of prominent gut commensals during inflammation
-
Cullen TW, Schofield WB, Barry NA, et al. Antimicrobial peptide resistance mediates resilience of prominent gut commensals during inflammation. Science. 2015;347:170-175.
-
(2015)
Science.
, vol.347
, pp. 170-175
-
-
Cullen, T.W.1
Schofield, W.B.2
Barry, N.A.3
|