-
1
-
-
84961288867
-
Are we really vastly outnumbered? Revisiting the ratio of bacterial to host cells in humans
-
Sender, R., Fuchs, S., Milo, R. Are we really vastly outnumbered? Revisiting the ratio of bacterial to host cells in humans. Cell 164, 337-340 (2016).
-
(2016)
Cell
, vol.164
, pp. 337-340
-
-
Sender, R.1
Fuchs, S.2
Milo, R.3
-
2
-
-
0017341656
-
Microbial ecology of the gastrointestinal tract
-
Savage, D. C. Microbial ecology of the gastrointestinal tract. Annu. Rev. Microbiol. 31, 107-133 (1977).
-
(1977)
Annu. Rev. Microbiol.
, vol.31
, pp. 107-133
-
-
Savage, D.C.1
-
3
-
-
33744804299
-
Metagenomic analysis of the human distal gut microbiome
-
Gill, S. R., et al. Metagenomic analysis of the human distal gut microbiome. Science 312, 1355-1359 (2006).
-
(2006)
Science
, vol.312
, pp. 1355-1359
-
-
Gill, S.R.1
-
4
-
-
84866146940
-
Diversity stability and resilience of the human gut microbiota
-
Lozupone, C. A., Stombaugh, J. I., Gordon, J. I., Jansson, J. K. Diversity, stability and resilience of the human gut microbiota. Nature 489, 220-230 (2012).
-
(2012)
Nature
, vol.489
, pp. 220-230
-
-
Lozupone, C.A.1
Stombaugh, J.I.2
Gordon, J.I.3
Jansson, J.K.4
-
5
-
-
15544369658
-
Host-bacterial mutualism in the human intestine
-
Bäckhed, F., Ley, R. E., Sonnenburg, J. L., Peterson, D. A., Gordon, J. I. Host-bacterial mutualism in the human intestine. Science 307, 1915-1920 (2005).
-
(2005)
Science
, vol.307
, pp. 1915-1920
-
-
Bäckhed, F.1
Ley, R.E.2
Sonnenburg, J.L.3
Peterson, D.A.4
Gordon, J.I.5
-
6
-
-
79952763661
-
Succession of microbial consortia in the developing infant gut microbiome
-
Koenig, J. E., et al. Succession of microbial consortia in the developing infant gut microbiome. Proc. Natl Acad. Sci. USA 108, 4578-4585 (2011).
-
(2011)
Proc. Natl Acad. Sci. USA
, vol.108
, pp. 4578-4585
-
-
Koenig, J.E.1
-
7
-
-
34547129847
-
Development of the human infant intestinal microbiota
-
Palmer, C., Bik, E. M., DiGiulio, D. B., Relman, D. A., Brown, P. O. Development of the human infant intestinal microbiota. PLoS Biol. 5, e177 (2007).
-
(2007)
PLoS Biol.
, vol.5
, pp. e177
-
-
Palmer, C.1
Bik, E.M.2
Giulio Di, D.B.3
Relman, D.A.4
Brown, P.O.5
-
8
-
-
84879744885
-
The long-term stability of the human gut microbiota
-
Faith, J. J., et al. The long-term stability of the human gut microbiota. Science 341, 1237439 (2013).
-
(2013)
Science
, vol.341
, pp. 1237439
-
-
Faith, J.J.1
-
9
-
-
84862141704
-
Human gut microbiome viewed across age and geography
-
Yatsunenko, T., et al. Human gut microbiome viewed across age and geography. Nature 486, 222-227 (2012).
-
(2012)
Nature
, vol.486
, pp. 222-227
-
-
Yatsunenko, T.1
-
10
-
-
84862276328
-
Structure, function and diversity of the healthy human microbiome
-
The Human Microbiome Project Consortium.
-
The Human Microbiome Project Consortium. Structure, function and diversity of the healthy human microbiome. Nature 486, 207-214 (2012).
-
(2012)
Nature
, vol.486
, pp. 207-214
-
-
-
11
-
-
84892828465
-
Diet rapidly and reproducibly alters the human gut microbiome
-
David, L. A., et al. Diet rapidly and reproducibly alters the human gut microbiome. Nature 505, 559-563 (2014).
-
(2014)
Nature
, vol.505
, pp. 559-563
-
-
David, L.A.1
-
12
-
-
58749112734
-
A core gut microbiome in obese and lean twins
-
Turnbaugh, P. J., et al. A core gut microbiome in obese and lean twins. Nature 457, 480-484 (2009).
-
(2009)
Nature
, vol.457
, pp. 480-484
-
-
Turnbaugh, P.J.1
-
13
-
-
84969704060
-
Culturing of 'unculturable' human microbiota reveals novel taxa and extensive sporulation
-
Browne, H. P., et al. Culturing of 'unculturable' human microbiota reveals novel taxa and extensive sporulation. Nature 533, 543-546 (2016).
-
(2016)
Nature
, vol.533
, pp. 543-546
-
-
Browne, H.P.1
-
14
-
-
84907323900
-
Cultivation-based multiplex phenotyping of human gut microbiota allows targeted recovery of previously uncultured bacteria
-
Rettedal, E. A., Gumpert, H., Sommer, M. O. Cultivation-based multiplex phenotyping of human gut microbiota allows targeted recovery of previously uncultured bacteria. Nat. Commun. 5, 4714 (2014).
-
(2014)
Nat. Commun.
, vol.5
, pp. 4714
-
-
Rettedal, E.A.1
Gumpert, H.2
Sommer, M.O.3
-
15
-
-
84942108460
-
Advancing gut microbiome research using cultivation
-
Sommer, M. O. Advancing gut microbiome research using cultivation. Curr. Opin. Microbiol. 27, 127-132 (2015).
-
(2015)
Curr. Opin. Microbiol.
, vol.27
, pp. 127-132
-
-
Sommer, M.O.1
-
16
-
-
79955025122
-
Extensive personal human gut microbiota culture collections characterized and manipulated in gnotobiotic mice
-
Goodman, A. L., et al. Extensive personal human gut microbiota culture collections characterized and manipulated in gnotobiotic mice. Proc. Natl Acad. Sci. USA 108, 6252-6257 (2011).
-
(2011)
Proc. Natl Acad. Sci. USA
, vol.108
, pp. 6252-6257
-
-
Goodman, A.L.1
-
17
-
-
84994399678
-
Culture of previously uncultured members of the human gut microbiota by culturomics
-
Lagier, J.-C. C., et al. Culture of previously uncultured members of the human gut microbiota by culturomics. Nat. Microbiol. 1, 16203 (2016).
-
(2016)
Nat. Microbiol.
, vol.1
, pp. 16203
-
-
Lagier, J.-C.C.1
-
18
-
-
84862723416
-
Contribution à l'étude sur l'intoxication intestinale
-
Distaso, A. Contribution à l'étude sur l'intoxication intestinale. Centralb. f. Bakteriol. 62, 433 (1912).
-
(1912)
Centralb. F. Bakteriol.
, vol.62
, pp. 433
-
-
Distaso, A.1
-
19
-
-
0000959701
-
The Bacteroides of human feces
-
Eggerth, A. H., Gagnon, B. H. The Bacteroides of human feces. J. Bacteriol. 25, 389-413 (1933).
-
(1933)
J. Bacteriol.
, vol.25
, pp. 389-413
-
-
Eggerth, A.H.1
Gagnon, B.H.2
-
20
-
-
0001444959
-
Recherches sur quelques microbes strictement anaérobies et leur rôle en pathologie
-
Veillon, M. H., Zuber, H. Recherches sur quelques microbes strictement anaérobies et leur rôle en pathologie. Arch. Med. Exp. Anat. Pathol. 10, 517-545 (1898).
-
(1898)
Arch. Med. Exp. Anat. Pathol.
, vol.10
, pp. 517-545
-
-
Veillon, M.H.1
Zuber, H.2
-
21
-
-
46249085739
-
Evolution of mammals and their gut microbes
-
Ley, R. E., et al. Evolution of mammals and their gut microbes. Science 320, 1647-1651 (2008).
-
(2008)
Science
, vol.320
, pp. 1647-1651
-
-
Ley, R.E.1
-
22
-
-
52049092682
-
Worlds within worlds: Evolution of the vertebrate gut microbiota
-
Ley, R. E., Lozupone, C. A., Hamady, M., Knight, R., Gordon, J. I. Worlds within worlds: Evolution of the vertebrate gut microbiota. Nat. Rev. Microbiol. 6, 776-788 (2008).
-
(2008)
Nat. Rev. Microbiol.
, vol.6
, pp. 776-788
-
-
Ley, R.E.1
Lozupone, C.A.2
Hamady, M.3
Knight, R.4
Gordon, J.I.5
-
24
-
-
84901506886
-
Surface area of the digestive tract-revisited
-
Helander, H. F., Fändriks, L. Surface area of the digestive tract-revisited. Scand. J. Gastroenterol. 49, 681-689 (2014).
-
(2014)
Scand. J. Gastroenterol.
, vol.49
, pp. 681-689
-
-
Helander, H.F.1
Fändriks, L.2
-
25
-
-
84951568821
-
Gut biogeography of the bacterial microbiota
-
Donaldson, G. P., Lee, S. M., Mazmanian, S. K. Gut biogeography of the bacterial microbiota. Nat. Rev. Microbiol. 14, 20-32 (2015).
-
(2015)
Nat. Rev. Microbiol.
, vol.14
, pp. 20-32
-
-
Donaldson, G.P.1
Lee, S.M.2
Mazmanian, S.K.3
-
26
-
-
0023693299
-
Measurement of gastrointestinal pH profiles in normal ambulant human subjects
-
Evans, D. F., Pye, G., Bramley, R., Clark, A. G., Dyson, T. J. Measurement of gastrointestinal pH profiles in normal ambulant human subjects. Gut 29, 1035-1041 (1988).
-
(1988)
Gut
, vol.29
, pp. 1035-1041
-
-
Evans, D.F.1
Pye, G.2
Bramley, R.3
Clark, A.G.4
Dyson, T.J.5
-
27
-
-
84908306828
-
Correlation between intraluminal oxygen gradient and radial partitioning of intestinal microbiota
-
Albenberg, L., Esipova, T. V., Judge, C. P., Bittinger, K. Correlation between intraluminal oxygen gradient and radial partitioning of intestinal microbiota. Gastroenterology 147, 1055-1063 (2014).
-
(2014)
Gastroenterology
, vol.147
, pp. 1055-1063
-
-
Albenberg, L.1
Esipova, T.V.2
Judge, C.P.3
Bittinger, K.4
-
28
-
-
84876408419
-
Blooming' the gut: How dysbiosis might contribute to pathogen evolution
-
Stecher, B., Maier, L., Hardt, W.-D. D. 'Blooming' in the gut: How dysbiosis might contribute to pathogen evolution. Nat. Rev. Microbiol. 11, 277-284 (2013).
-
(2013)
Nat. Rev. Microbiol.
, vol.11
, pp. 277-284
-
-
Stecher, B.1
Maier, L.2
Hardt, W.-D.D.3
-
29
-
-
84897138296
-
Role of the microbiota in immunity and inflammation
-
Belkaid, Y., Hand, T. W. Role of the microbiota in immunity and inflammation. Cell 157, 121-141 (2014).
-
(2014)
Cell
, vol.157
, pp. 121-141
-
-
Belkaid, Y.1
Hand, T.W.2
-
30
-
-
38449088143
-
Comparative metagenomics revealed commonly enriched gene sets in human gut microbiomes
-
Kurokawa, K., Itoh, T., Kuwahara, T., Oshima, K. Comparative metagenomics revealed commonly enriched gene sets in human gut microbiomes. DNA Res. 14, 169-181 (2007).
-
(2007)
DNA Res.
, vol.14
, pp. 169-181
-
-
Kurokawa, K.1
Itoh, T.2
Kuwahara, T.3
Oshima, K.4
-
31
-
-
0842264185
-
The strict anaerobe Bacteroides fragilis grows in and benefits from nanomolar concentrations of oxygen
-
Baughn, A. D., Malamy, M. H. The strict anaerobe Bacteroides fragilis grows in and benefits from nanomolar concentrations of oxygen. Nature 427, 441-444 (2004).
-
(2004)
Nature
, vol.427
, pp. 441-444
-
-
Baughn, A.D.1
Malamy, M.H.2
-
32
-
-
84864376929
-
Inactivation of a single gene enables microaerobic growth of the obligate anaerobe Bacteroides fragilis
-
Meehan, B. M., Baughn, A. D., Gallegos, R., Malamy, M. H. Inactivation of a single gene enables microaerobic growth of the obligate anaerobe Bacteroides fragilis. Proc. Natl Acad. Sci. USA 109, 12153-12158 (2012).
-
(2012)
Proc. Natl Acad. Sci. USA
, vol.109
, pp. 12153-12158
-
-
Meehan, B.M.1
Baughn, A.D.2
Gallegos, R.3
Malamy, M.H.4
-
33
-
-
84881318637
-
Ferritin-like family proteins in the anaerobe Bacteroides fragilis: When an oxygen storm is coming, take your iron to the shelter
-
Rocha, E. R., Smith, C. J. Ferritin-like family proteins in the anaerobe Bacteroides fragilis: When an oxygen storm is coming, take your iron to the shelter. Biometals 26, 577-591 (2013).
-
(2013)
Biometals
, vol.26
, pp. 577-591
-
-
Rocha, E.R.1
Smith, C.J.2
-
34
-
-
0036155121
-
Aerobic-type ribonucleotide reductase in the anaerobe Bacteroides fragilis
-
Smalley, D., Rocha, E. R., Smith, C. J. Aerobic-type ribonucleotide reductase in the anaerobe Bacteroides fragilis. J. Bacteriol. 184, 895-903 (2002).
-
(2002)
J. Bacteriol.
, vol.184
, pp. 895-903
-
-
Smalley, D.1
Rocha, E.R.2
Smith, C.J.3
-
35
-
-
0029848194
-
Oxidative stress response in an anaerobe Bacteroides fragilis: A role for catalase in protection against hydrogen peroxide
-
Rocha, E. R., Selby, T., Coleman, J. P., Smith, J. C. Oxidative stress response in an anaerobe, Bacteroides fragilis: A role for catalase in protection against hydrogen peroxide. J. Bacteriol. 178, 6895-6903 (1996).
-
(1996)
J. Bacteriol.
, vol.178
, pp. 6895-6903
-
-
Rocha, E.R.1
Selby, T.2
Coleman, J.P.3
Smith, J.C.4
-
36
-
-
0029845965
-
A model of host-microbial interactions in an open mammalian ecosystem
-
Bry, L., Falk, P. G., Midtvedt, T., Gordon, J. I. A model of host-microbial interactions in an open mammalian ecosystem. Science 273, 1380-1383 (1996).
-
(1996)
Science
, vol.273
, pp. 1380-1383
-
-
Bry, L.1
Falk, P.G.2
Midtvedt, T.3
Gordon, J.I.4
-
37
-
-
84885573828
-
Microbiota-liberated host sugars facilitate post-antibiotic expansion of enteric pathogens
-
Ng, K. M., et al. Microbiota-liberated host sugars facilitate post-antibiotic expansion of enteric pathogens. Nature 502, 96-99 (2013).
-
(2013)
Nature
, vol.502
, pp. 96-99
-
-
Ng, K.M.1
-
38
-
-
0347983829
-
Intestinal absorption in health and disease-sugars
-
Wright, E. M., Martín, M. G., Turk, E. Intestinal absorption in health and disease-sugars. Best. Pract. Res. Clin. Gastroenterol. 17, 943-956 (2003).
-
(2003)
Best. Pract. Res. Clin. Gastroenterol.
, vol.17
, pp. 943-956
-
-
Wright, E.M.1
Martín, M.G.2
Turk, E.3
-
39
-
-
0017381987
-
Fermentation of mucin and plant polysaccharides by strains of Bacteroides from the human colon
-
Salyers, A. A., Vercellotti, J. R., West, S. E. Fermentation of mucin and plant polysaccharides by strains of Bacteroides from the human colon. Appl. Environ. Microbiol. 33, 319-322 (1977).
-
(1977)
Appl. Environ. Microbiol.
, vol.33
, pp. 319-322
-
-
Salyers, A.A.1
Vercellotti, J.R.2
West, S.E.3
-
40
-
-
0021349077
-
The contribution of the large intestine to energy supplies in man
-
McNeil, N. I. The contribution of the large intestine to energy supplies in man. Am. J. Clin. Nutr. 39, 338-342 (1984).
-
(1984)
Am. J. Clin. Nutr.
, vol.39
, pp. 338-342
-
-
McNeil, N.I.1
-
41
-
-
84884411052
-
Bacterial colonization factors control specificity and stability of the gut microbiota
-
Lee, S. M., et al. Bacterial colonization factors control specificity and stability of the gut microbiota. Nature 501, 426-429 (2013).
-
(2013)
Nature
, vol.501
, pp. 426-429
-
-
Lee, S.M.1
-
42
-
-
0024319453
-
Biochemical evidence that starch breakdown by Bacteroides thetaiotaomicron involves outer membrane starch-binding sites and periplasmic starch-degrading enzymes
-
Anderson, K. L., Salyers, A. A. Biochemical evidence that starch breakdown by Bacteroides thetaiotaomicron involves outer membrane starch-binding sites and periplasmic starch-degrading enzymes. J. Bacteriol. 171, 3192-3198 (1989).
-
(1989)
J. Bacteriol.
, vol.171
, pp. 3192-3198
-
-
Anderson, K.L.1
Salyers, A.A.2
-
43
-
-
0024336683
-
Genetic evidence that outer membrane binding of starch is required for starch utilization by Bacteroides thetaiotaomicron
-
Anderson, K. L., Salyers, A. A. Genetic evidence that outer membrane binding of starch is required for starch utilization by Bacteroides thetaiotaomicron. J. Bacteriol. 171, 3199-3204 (1989).
-
(1989)
J. Bacteriol.
, vol.171
, pp. 3199-3204
-
-
Anderson, K.L.1
Salyers, A.A.2
-
44
-
-
55249108031
-
Mucosal glycan foraging enhances fitness and transmission of a saccharolytic human gut bacterial symbiont
-
Martens, E. C., Chiang, H. C., Gordon, J. I. Mucosal glycan foraging enhances fitness and transmission of a saccharolytic human gut bacterial symbiont. Cell Host Microbe 4, 447-457 (2008).
-
(2008)
Cell Host Microbe
, vol.4
, pp. 447-457
-
-
Martens, E.C.1
Chiang, H.C.2
Gordon, J.I.3
-
45
-
-
84859925158
-
How glycan metabolism shapes the human gut microbiota
-
Koropatkin, N. M., Cameron, E. A., Martens, E. C. How glycan metabolism shapes the human gut microbiota. Nat. Rev. Microbiol. 10, 323-335 (2012).
-
(2012)
Nat. Rev. Microbiol.
, vol.10
, pp. 323-335
-
-
Koropatkin, N.M.1
Cameron, E.A.2
Martens, E.C.3
-
46
-
-
54949084244
-
Characterization of ApuB, an extracellular type II amylopullulanase from Bifidobacterium breve UCC2003
-
Motherway, M., et al. Characterization of ApuB, an extracellular type II amylopullulanase from Bifidobacterium breve UCC2003. Appl. Environ. Microbiol. 74, 6271-6279 (2008).
-
(2008)
Appl. Environ. Microbiol.
, vol.74
, pp. 6271-6279
-
-
Motherway, M.1
-
47
-
-
0037470975
-
A genomic view of the human-Bacteroides thetaiotaomicron symbiosis
-
Xu, J., et al. A genomic view of the human-Bacteroides thetaiotaomicron symbiosis. Science 299, 2074-2076 (2003).
-
(2003)
Science
, vol.299
, pp. 2074-2076
-
-
Xu, J.1
-
48
-
-
34447516925
-
Evolution of symbiotic bacteria in the distal human intestine
-
Xu, J., et al. Evolution of symbiotic bacteria in the distal human intestine. PLoS Biol. 5, e156 (2007).
-
(2007)
PLoS Biol.
, vol.5
, pp. e156
-
-
Xu, J.1
-
49
-
-
84908409041
-
Multifunctional nutrient-binding proteins adapt human symbiotic bacteria for glycan competition in the gut by separately promoting enhanced sensing and catalysis
-
Cameron, E. A., et al. Multifunctional nutrient-binding proteins adapt human symbiotic bacteria for glycan competition in the gut by separately promoting enhanced sensing and catalysis. mBio 5, e01441-14 (2014).
-
(2014)
MBio
, vol.5
, pp. e01441-e01514
-
-
Cameron, E.A.1
-
50
-
-
67650538066
-
Coordinate regulation of glycan degradation and polysaccharide capsule biosynthesis by a prominent human gut symbiont
-
Martens, E. C., Roth, R., Heuser, J. E., Gordon, J. I. Coordinate regulation of glycan degradation and polysaccharide capsule biosynthesis by a prominent human gut symbiont. J. Biol. Chem. 284, 18445-18457 (2009).
-
(2009)
J. Biol. Chem.
, vol.284
, pp. 18445-18457
-
-
Martens, E.C.1
Roth, R.2
Heuser, J.E.3
Gordon, J.I.4
-
51
-
-
84864112411
-
Prioritization of a plant polysaccharide over a mucus carbohydrate is enforced by a Bacteroides hybrid two-component system
-
Lynch, J. B., Sonnenburg, J. L. Prioritization of a plant polysaccharide over a mucus carbohydrate is enforced by a Bacteroides hybrid two-component system. Mol. Microbiol. 85, 478-491 (2012).
-
(2012)
Mol. Microbiol.
, vol.85
, pp. 478-491
-
-
Lynch, J.B.1
Sonnenburg, J.L.2
-
52
-
-
33745043692
-
A hybrid two-component system protein of a prominent human gut symbiont couples glycan sensing in vivo to carbohydrate metabolism
-
Sonnenburg, E. D., et al. A hybrid two-component system protein of a prominent human gut symbiont couples glycan sensing in vivo to carbohydrate metabolism. Proc. Natl Acad. Sci. USA 103, 8834-8839 (2006).
-
(2006)
Proc. Natl Acad. Sci. USA
, vol.103
, pp. 8834-8839
-
-
Sonnenburg, E.D.1
-
53
-
-
84872177104
-
Intramolecular arrangement of sensor and regulator overcomes relaxed specificity in hybrid two-component systems
-
Townsend, G. E., Raghavan, V., Zwir, I., Groisman, E. A. Intramolecular arrangement of sensor and regulator overcomes relaxed specificity in hybrid two-component systems. Proc. Natl Acad. Sci. USA 110, 161-169 (2013).
-
(2013)
Proc. Natl Acad. Sci. USA
, vol.110
, pp. 161-169
-
-
Townsend, G.E.1
Raghavan, V.2
Zwir, I.3
Groisman, E.A.4
-
54
-
-
84906937037
-
Tuning transcription of nutrient utilization genes to catabolic rate promotes growth in a gut bacterium
-
Raghavan, V., Lowe, E. C., Townsend, G. E., Bolam, D. N., Groisman, E. A. Tuning transcription of nutrient utilization genes to catabolic rate promotes growth in a gut bacterium. Mol. Microbiol. 93, 1010-1025 (2014).
-
(2014)
Mol. Microbiol.
, vol.93
, pp. 1010-1025
-
-
Raghavan, V.1
Lowe, E.C.2
Townsend, G.E.3
Bolam, D.N.4
Groisman, E.A.5
-
55
-
-
84995478908
-
Multiple signals govern utilization of a polysaccharide in the gut bacterium Bacteroides thetaiotaomicron
-
Schwalm, N. D., Townsend, G. E., Groisman, E. A. Multiple signals govern utilization of a polysaccharide in the gut bacterium Bacteroides thetaiotaomicron. mBio 7, e01342-16 (2016).
-
(2016)
MBio
, vol.7
, pp. e01342-e01416
-
-
Schwalm, N.D.1
Townsend, G.E.2
Groisman, E.A.3
-
56
-
-
84959485011
-
Cellulose degradation in the human gut: Ruminococcus champanellensis expands the cellulosome paradigm
-
Cann, I., Bernardi, R. C., Mackie, R. I. Cellulose degradation in the human gut: Ruminococcus champanellensis expands the cellulosome paradigm. Environ. Microbiol. 18, 307-310 (2016).
-
(2016)
Environ. Microbiol.
, vol.18
, pp. 307-310
-
-
Cann, I.1
Bernardi, R.C.2
MacKie, R.I.3
-
57
-
-
85004148129
-
Cellulosomes: Bacterial nanomachines for dismantling plant polysaccharides
-
Artzi, L., Bayer, E. A., Moraïs, S. Cellulosomes: Bacterial nanomachines for dismantling plant polysaccharides. Nat. Rev. Microbiol. 15, 83-95 (2016).
-
(2016)
Nat. Rev. Microbiol.
, vol.15
, pp. 83-95
-
-
Artzi, L.1
Bayer, E.A.2
Moraïs, S.3
-
58
-
-
15544376418
-
Glycan foraging in vivo by an intestine-adapted bacterial symbiont
-
Sonnenburg, J. L., et al. Glycan foraging in vivo by an intestine-adapted bacterial symbiont. Science 307, 1955-1959 (2005).
-
(2005)
Science
, vol.307
, pp. 1955-1959
-
-
Sonnenburg, J.L.1
-
59
-
-
84954099831
-
Diet-induced extinctions in the gut microbiota compound over generations
-
Sonnenburg, E. D., et al. Diet-induced extinctions in the gut microbiota compound over generations. Nature 529, 212-215 (2016).
-
(2016)
Nature
, vol.529
, pp. 212-215
-
-
Sonnenburg, E.D.1
-
60
-
-
33750532744
-
The Bacteroides fragilis cell envelope: Quarterback linebacker coach-or all three?
-
Pumbwe, L., Skilbeck, C. A., Wexler, H. M. The Bacteroides fragilis cell envelope: Quarterback, linebacker, coach-or all three? Anaerobe 12, 211-220 (2006).
-
(2006)
Anaerobe
, vol.12
, pp. 211-220
-
-
Pumbwe, L.1
Skilbeck, C.A.2
Wexler, H.M.3
-
61
-
-
84918842275
-
The VI capsular polysaccharide enables Salmonella enterica serovar typhi to evade microbe-guided neutrophil chemotaxis
-
Wangdi, T., Lee, C. Y., Spees, A. M., Yu, C., Kingsbury, D. D. The Vi capsular polysaccharide enables Salmonella enterica serovar typhi to evade microbe-guided neutrophil chemotaxis. PLoS Pathog. 10, e1004306 (2014).
-
(2014)
PLoS Pathog.
, vol.10
, pp. e1004306
-
-
Wangdi, T.1
Lee, C.Y.2
Spees, A.M.3
Yu, C.4
Kingsbury, D.D.5
-
62
-
-
84977588881
-
Complement resistance mechanisms of Klebsiella pneumoniae
-
Doorduijn, D. J., Rooijakkers, S. H., van Schaik, W., Bardoel, B. W. Complement resistance mechanisms of Klebsiella pneumoniae. Immunobiology 221, 1102-1109 (2016).
-
(2016)
Immunobiology
, vol.221
, pp. 1102-1109
-
-
Doorduijn, D.J.1
Rooijakkers, S.H.2
Van Schaik, W.3
Bardoel, B.W.4
-
63
-
-
0035969489
-
Extensive surface diversity of a commensal microorganism by multiple DNA inversions
-
Krinos, C. M., et al. Extensive surface diversity of a commensal microorganism by multiple DNA inversions. Nature 414, 555-558 (2001).
-
(2001)
Nature
, vol.414
, pp. 555-558
-
-
Krinos, C.M.1
-
64
-
-
77955345887
-
Trans locus inhibitors limit concomitant polysaccharide synthesis in the human gut symbiont Bacteroides fragilis
-
Chatzidaki-Livanis, M., Weinacht, K. G., Comstock, L. E. Trans locus inhibitors limit concomitant polysaccharide synthesis in the human gut symbiont Bacteroides fragilis. Proc. Natl Acad. Sci. USA 107, 11976-11980 (2010).
-
(2010)
Proc. Natl Acad. Sci. USA
, vol.107
, pp. 11976-11980
-
-
Chatzidaki-Livanis, M.1
Weinacht, K.G.2
Comstock, L.E.3
-
65
-
-
33748155285
-
Bacterial glycans: Key mediators of diverse host immune responses
-
Comstock, L. E., Kasper, D. L. Bacterial glycans: Key mediators of diverse host immune responses. Cell 126, 847-850 (2006).
-
(2006)
Cell
, vol.126
, pp. 847-850
-
-
Comstock, L.E.1
Kasper, D.L.2
-
66
-
-
38749118318
-
Niche-specific features of the intestinal Bacteroidales
-
Coyne, M. J., Comstock, L. E. Niche-specific features of the intestinal Bacteroidales. J. Bacteriol. 190, 736-742 (2008).
-
(2008)
J. Bacteriol.
, vol.190
, pp. 736-742
-
-
Coyne, M.J.1
Comstock, L.E.2
-
67
-
-
33847779192
-
Phase-variable expression of a family of glycoproteins imparts a dynamic surface to a symbiont in its human intestinal ecosystem
-
Fletcher, C. M., Coyne, M. J., Bentley, D. L., Villa, O. F., Comstock, L. E. Phase-variable expression of a family of glycoproteins imparts a dynamic surface to a symbiont in its human intestinal ecosystem. Proc. Natl Acad. Sci. USA 104, 2413-2418 (2007).
-
(2007)
Proc. Natl Acad. Sci. USA
, vol.104
, pp. 2413-2418
-
-
Fletcher, C.M.1
Coyne, M.J.2
Bentley, D.L.3
Villa, O.F.4
Comstock, L.E.5
-
68
-
-
51349110626
-
Role of glycan synthesis in colonization of the mammalian gut by the bacterial symbiont Bacteroides fragilis
-
Coyne, M. J., Chatzidaki-Livanis, M., Paoletti, L. C., Comstock, L. E. Role of glycan synthesis in colonization of the mammalian gut by the bacterial symbiont Bacteroides fragilis. Proc. Natl Acad. Sci. USA 105, 13099-13104 (2008).
-
(2008)
Proc. Natl Acad. Sci. USA
, vol.105
, pp. 13099-13104
-
-
Coyne, M.J.1
Chatzidaki-Livanis, M.2
Paoletti, L.C.3
Comstock, L.E.4
-
69
-
-
35848931007
-
IgA response to symbiotic bacteria as a mediator of gut homeostasis
-
Peterson, D. A., McNulty, N. P., Guruge, J. L., Gordon, J. I. IgA response to symbiotic bacteria as a mediator of gut homeostasis. Cell Host Microbe 2, 328-339 (2007).
-
(2007)
Cell Host Microbe
, vol.2
, pp. 328-339
-
-
Peterson, D.A.1
McNulty, N.P.2
Guruge, J.L.3
Gordon, J.I.4
-
70
-
-
44449106055
-
A microbial symbiosis factor prevents intestinal inflammatory disease
-
Mazmanian, S. K., Round, J. L., Kasper, D. L. A microbial symbiosis factor prevents intestinal inflammatory disease. Nature 453, 620-625 (2008).
-
(2008)
Nature
, vol.453
, pp. 620-625
-
-
Mazmanian, S.K.1
Round, J.L.2
Kasper, D.L.3
-
71
-
-
84867656021
-
Outer membrane vesicles of a human commensal mediate immune regulation and disease protection
-
Shen, Y., et al. Outer membrane vesicles of a human commensal mediate immune regulation and disease protection. Cell Host Microbe 12, 509-520 (2012).
-
(2012)
Cell Host Microbe
, vol.12
, pp. 509-520
-
-
Shen, Y.1
-
72
-
-
84966293351
-
Gene-microbiota interactions contribute to the pathogenesis of inflammatory bowel disease
-
Chu, H., et al. Gene-microbiota interactions contribute to the pathogenesis of inflammatory bowel disease. Science 352, 1116-1120 (2016).
-
(2016)
Science
, vol.352
, pp. 1116-1120
-
-
Chu, H.1
-
73
-
-
33845874101
-
An obesity-associated gut microbiome with increased capacity for energy harvest
-
Turnbaugh, P. J., et al. An obesity-associated gut microbiome with increased capacity for energy harvest. Nature 444, 1027-1031 (2006).
-
(2006)
Nature
, vol.444
, pp. 1027-1031
-
-
Turnbaugh, P.J.1
-
74
-
-
80054925355
-
Eating for two: How metabolism establishes interspecies interactions in the gut
-
Fischbach, M. A., Sonnenburg, J. L. Eating for two: How metabolism establishes interspecies interactions in the gut. Cell Host Microbe 10, 336-347 (2011).
-
(2011)
Cell Host Microbe
, vol.10
, pp. 336-347
-
-
Fischbach, M.A.1
Sonnenburg, J.L.2
-
75
-
-
84910138842
-
Starving our microbial self: The deleterious consequences of a diet deficient in microbiota-accessible carbohydrates
-
Sonnenburg, E. D., Sonnenburg, J. L. Starving our microbial self: The deleterious consequences of a diet deficient in microbiota-accessible carbohydrates. Cell Metab. 20, 779-786 (2014).
-
(2014)
Cell Metab.
, vol.20
, pp. 779-786
-
-
Sonnenburg, E.D.1
Sonnenburg, J.L.2
-
76
-
-
0034076597
-
Analysis of intestinal flora development in breast-fed and formula-fed infants by using molecular identification and detection methods
-
Harmsen, H. J., et al. Analysis of intestinal flora development in breast-fed and formula-fed infants by using molecular identification and detection methods. J. Pediatr. Gastroenterol. Nutr. 30, 61-67 (2000).
-
(2000)
J. Pediatr. Gastroenterol. Nutr.
, vol.30
, pp. 61-67
-
-
Harmsen, H.J.1
-
77
-
-
77952218113
-
Consumption of human milk oligosaccharides by gut-related microbes
-
Marcobal, A., et al. Consumption of human milk oligosaccharides by gut-related microbes. J. Agric. Food. Chem. 58, 5334-5340 (2010).
-
(2010)
J. Agric. Food. Chem.
, vol.58
, pp. 5334-5340
-
-
Marcobal, A.1
-
78
-
-
80054886353
-
Bacteroides in the infant gut consume milk oligosaccharides via mucus-utilization pathways
-
Marcobal, A., et al. Bacteroides in the infant gut consume milk oligosaccharides via mucus-utilization pathways. Cell Host Microbe 10, 507-514 (2011).
-
(2011)
Cell Host Microbe
, vol.10
, pp. 507-514
-
-
Marcobal, A.1
-
79
-
-
0033826695
-
Oligosaccharides in human milk: Structural, functional, metabolic aspects
-
Kunz, C., Rudloff, S., Baier, W., Klein, N., Strobel, S. Oligosaccharides in human milk: Structural, functional, metabolic aspects. Annu. Rev. Nutr. 20, 699-722 (2000).
-
(2000)
Annu. Rev. Nutr.
, vol.20
, pp. 699-722
-
-
Kunz, C.1
Rudloff, S.2
Baier, W.3
Klein, N.4
Strobel, S.5
-
80
-
-
33750467930
-
A strategy for annotating the human milk glycome
-
Ninonuevo, M. R., Park, Y., Yin, H., Zhang, J. A strategy for annotating the human milk glycome. J. Agric. Food Chem. 54, 7471-7480 (2006).
-
(2006)
J. Agric. Food Chem.
, vol.54
, pp. 7471-7480
-
-
Ninonuevo, M.R.1
Park, Y.2
Yin, H.3
Zhang, J.4
-
81
-
-
84959476433
-
Sialylated milk oligosaccharides promote microbiota-dependent growth in models of infant undernutrition
-
Charbonneau, M. R., et al. Sialylated milk oligosaccharides promote microbiota-dependent growth in models of infant undernutrition. Cell 164, 859-871 (2016).
-
(2016)
Cell
, vol.164
, pp. 859-871
-
-
Charbonneau, M.R.1
-
82
-
-
79251584066
-
Bifidobacteria can protect from enteropathogenic infection through production of acetate
-
Fukuda, S., et al. Bifidobacteria can protect from enteropathogenic infection through production of acetate. Nature 469, 543-547 (2011).
-
(2011)
Nature
, vol.469
, pp. 543-547
-
-
Fukuda, S.1
-
83
-
-
84924546208
-
The role of probiotic lactic acid bacteria and bifidobacteria in the prevention and treatment of inflammatory bowel disease and other related diseases: A systematic review of randomized human clinical trials
-
Saez-Lara, M. J., Gomez-Llorente, C. The role of probiotic lactic acid bacteria and bifidobacteria in the prevention and treatment of inflammatory bowel disease and other related diseases: A systematic review of randomized human clinical trials. Biomed. Res. Int. 2015, 505878 (2015).
-
(2015)
Biomed. Res. Int.
, vol.2015
, pp. 505878
-
-
Saez-Lara, M.J.1
Gomez-Llorente, C.2
-
84
-
-
65249149643
-
Characterizing a model human gut microbiota composed of members of its two dominant bacterial phyla
-
Mahowald, M. A., et al. Characterizing a model human gut microbiota composed of members of its two dominant bacterial phyla. Proc. Natl Acad. Sci. USA 106, 5859-5864 (2009).
-
(2009)
Proc. Natl Acad. Sci. USA
, vol.106
, pp. 5859-5864
-
-
Mahowald, M.A.1
-
85
-
-
33845508443
-
Genomic and metabolic studies of the impact of probiotics on a model gut symbiont and host
-
Sonnenburg, J. L., Chen, C. T. L., Gordon, J. I. Genomic and metabolic studies of the impact of probiotics on a model gut symbiont and host. PLoS Biol. 4, e413 (2006).
-
(2006)
PLoS Biol.
, vol.4
, pp. e413
-
-
Sonnenburg, J.L.1
Chen, C.T.L.2
Gordon, J.I.3
-
86
-
-
43549115250
-
Identification and quantitation of cobalamin and cobalamin analogues in human feces
-
Allen, R. H., Stabler, S. P. Identification and quantitation of cobalamin and cobalamin analogues in human feces. Am. J. Clin. Nutr. 87, 1324-1335 (2008).
-
(2008)
Am. J. Clin. Nutr.
, vol.87
, pp. 1324-1335
-
-
Allen, R.H.1
Stabler, S.P.2
-
87
-
-
84910142845
-
Vitamin B12 as a modulator of gut microbial ecology
-
Degnan, P. H., Taga, M. E., Goodman, A. L. Vitamin B12 as a modulator of gut microbial ecology. Cell Metab. 20, 769-778 (2014).
-
(2014)
Cell Metab.
, vol.20
, pp. 769-778
-
-
Degnan, P.H.1
Taga, M.E.2
Goodman, A.L.3
-
88
-
-
84892601205
-
Human gut microbes use multiple transporters to distinguish vitamin B12 analogs and compete in the gut
-
Degnan, P. H., Barry, N. A., Mok, K. C., Taga, M. E., Goodman, A. L. Human gut microbes use multiple transporters to distinguish vitamin B12 analogs and compete in the gut. Cell Host Microbe 15, 47-57 (2014).
-
(2014)
Cell Host Microbe
, vol.15
, pp. 47-57
-
-
Degnan, P.H.1
Barry, N.A.2
Mok, K.C.3
Taga, M.E.4
Goodman, A.L.5
-
89
-
-
69949123813
-
Identifying genetic determinants needed to establish a human gut symbiont in its habitat
-
Goodman, A. L., et al. Identifying genetic determinants needed to establish a human gut symbiont in its habitat. Cell Host Microbe 6, 279-289 (2009).
-
(2009)
Cell Host Microbe
, vol.6
, pp. 279-289
-
-
Goodman, A.L.1
-
90
-
-
84891789294
-
An ecological network of polysaccharide utilization among human intestinal symbionts
-
Rakoff-Nahoum, S., Coyne, M. J., Comstock, L. E. An ecological network of polysaccharide utilization among human intestinal symbionts. Curr. Biol. 24, 40-49 (2014).
-
(2014)
Curr. Biol.
, vol.24
, pp. 40-49
-
-
Rakoff-Nahoum, S.1
Coyne, M.J.2
Comstock, L.E.3
-
91
-
-
84967195417
-
The evolution of cooperation within the gut microbiota
-
Rakoff-Nahoum, S., Foster, K. R., Comstock, L. E. The evolution of cooperation within the gut microbiota. Nature 533, 255-259 (2016).
-
(2016)
Nature
, vol.533
, pp. 255-259
-
-
Rakoff-Nahoum, S.1
Foster, K.R.2
Comstock, L.E.3
-
92
-
-
84899734976
-
Preferential packing of acidic glycosidases and proteases into Bacteroides outer membrane vesicles
-
Elhenawy, W., Debelyy, M. O., Feldman, M. F. Preferential packing of acidic glycosidases and proteases into Bacteroides outer membrane vesicles. mBio 5, e00909-14 (2014).
-
(2014)
MBio
, vol.5
, pp. e00909-e00914
-
-
Elhenawy, W.1
Debelyy, M.O.2
Feldman, M.F.3
-
93
-
-
77957959533
-
Biological functions and biogenesis of secreted bacterial outer membrane vesicles
-
Kulp, A., Kuehn, M. J. Biological functions and biogenesis of secreted bacterial outer membrane vesicles. Annu. Rev. Microbiol. 64, 163 (2010).
-
(2010)
Annu. Rev. Microbiol.
, vol.64
, pp. 163
-
-
Kulp, A.1
Kuehn, M.J.2
-
94
-
-
22144490199
-
An immunomodulatory molecule of symbiotic bacteria directs maturation of the host immune system
-
Mazmanian, S. K., Liu, C. H., Tzianabos, A. O., Kasper, D. L. An immunomodulatory molecule of symbiotic bacteria directs maturation of the host immune system. Cell 122, 107-118 (2005).
-
(2005)
Cell
, vol.122
, pp. 107-118
-
-
Mazmanian, S.K.1
Liu, C.H.2
Tzianabos, A.O.3
Kasper, D.L.4
-
95
-
-
27244436751
-
Bacteriocins: Developing innate immunity for food
-
Cotter, P. D., Hill, C., Ross, R. P. Bacteriocins: Developing innate immunity for food. Nat. Rev. Microbiol. 3, 777-788 (2005).
-
(2005)
Nat. Rev. Microbiol.
, vol.3
, pp. 777-788
-
-
Cotter, P.D.1
Hill, C.2
Ross, R.P.3
-
96
-
-
84945964162
-
Bacteriocin production augments niche competition by enterococci in the mammalian gastrointestinal tract
-
Kommineni, S., et al. Bacteriocin production augments niche competition by enterococci in the mammalian gastrointestinal tract. Nature 526, 719-722 (2015).
-
(2015)
Nature
, vol.526
, pp. 719-722
-
-
Kommineni, S.1
-
97
-
-
84914811256
-
An antimicrobial protein of the gut symbiont Bacteroides fragilis with a MACPF domain of host immune proteins
-
Chatzidaki-Livanis, M., Coyne, M. J., Comstock, L. E. An antimicrobial protein of the gut symbiont Bacteroides fragilis with a MACPF domain of host immune proteins. Mol. Microbiol. 94, 1361-1374 (2014).
-
(2014)
Mol. Microbiol.
, vol.94
, pp. 1361-1374
-
-
Chatzidaki-Livanis, M.1
Coyne, M.J.2
Comstock, L.E.3
-
98
-
-
84986607508
-
Bacteroidales secreted antimicrobial proteins target surface molecules necessary for gut colonization and mediate competition in vivo
-
Roelofs, K. G., Coyne, M. J., Gentyala, R. R., Chatzidaki-Livanis, M., Comstock, L. E. Bacteroidales secreted antimicrobial proteins target surface molecules necessary for gut colonization and mediate competition in vivo. mBio 7, e01055-16 (2016).
-
(2016)
MBio
, vol.7
, pp. e01055-e01116
-
-
Roelofs, K.G.1
Coyne, M.J.2
Gentyala, R.R.3
Chatzidaki-Livanis, M.4
Comstock, L.E.5
-
99
-
-
0030735454
-
Cloning and genetic and sequence analyses of the bacteriocin 21 determinant encoded on the Enterococcus faecalis pheromone-responsive conjugative plasmid pPD1
-
Tomita, H., Fujimoto, S., Tanimoto, K., Ike, Y. Cloning and genetic and sequence analyses of the bacteriocin 21 determinant encoded on the Enterococcus faecalis pheromone-responsive conjugative plasmid pPD1. J. Bacteriol. 179, 7843-7855 (1997).
-
(1997)
J. Bacteriol.
, vol.179
, pp. 7843-7855
-
-
Tomita, H.1
Fujimoto, S.2
Tanimoto, K.3
Ike, Y.4
-
100
-
-
84921894836
-
A type VI secretion-related pathway in Bacteroidetes mediates interbacterial antagonism
-
Russell, A. B., et al. A type VI secretion-related pathway in Bacteroidetes mediates interbacterial antagonism. Cell Host Microbe 16, 227-236 (2014).
-
(2014)
Cell Host Microbe
, vol.16
, pp. 227-236
-
-
Russell, A.B.1
-
101
-
-
84903978009
-
Evidence of extensive DNA transfer between Bacteroidales species within the human gut
-
Coyne, M. J., Zitomersky, N. L., McGuire, A. M., Earl, A. M., Comstock, L. E. Evidence of extensive DNA transfer between Bacteroidales species within the human gut. mBio 5, 14 (2014).
-
(2014)
MBio
, vol.5
, pp. 14
-
-
Coyne, M.J.1
Zitomersky, N.L.2
McGuire, A.M.3
Earl, A.M.4
Comstock, L.E.5
-
102
-
-
84892670882
-
Type VI secretion system effectors: Poisons with a purpose
-
Russell, A. B., Peterson, S. B., Mougous, J. D. Type VI secretion system effectors: Poisons with a purpose. Nat. Rev. Microbiol. 12, 137-148 (2014).
-
(2014)
Nat. Rev. Microbiol.
, vol.12
, pp. 137-148
-
-
Russell, A.B.1
Peterson, S.B.2
Mougous, J.D.3
-
103
-
-
84954321839
-
Type VI secretion systems of human gut Bacteroidales segregate into three genetic architectures, two of which are contained on mobile genetic elements
-
Coyne, M. J., Roelofs, K. G., Comstock, L. E. Type VI secretion systems of human gut Bacteroidales segregate into three genetic architectures, two of which are contained on mobile genetic elements. BMC Genomics 17, 58 (2016).
-
(2016)
BMC Genomics
, vol.17
, pp. 58
-
-
Coyne, M.J.1
Roelofs, K.G.2
Comstock, L.E.3
-
104
-
-
84962113312
-
Human symbionts inject and neutralize antibacterial toxins to persist in the gut
-
Wexler, A. G., et al. Human symbionts inject and neutralize antibacterial toxins to persist in the gut. Proc. Natl Acad. Sci. USA 113, 3639-3644 (2016).
-
(2016)
Proc. Natl Acad. Sci. USA
, vol.113
, pp. 3639-3644
-
-
Wexler, A.G.1
-
105
-
-
84962124787
-
Bacteroides fragilis type VI secretion systems use novel effector and immunity proteins to antagonize human gut Bacteroidales species
-
Chatzidaki-Livanis, M., Geva-Zatorsky, N., Comstock, L. E. Bacteroides fragilis type VI secretion systems use novel effector and immunity proteins to antagonize human gut Bacteroidales species. Proc. Natl Acad. Sci. USA 113, 3627-3632 (2016).
-
(2016)
Proc. Natl Acad. Sci. USA
, vol.113
, pp. 3627-3632
-
-
Chatzidaki-Livanis, M.1
Geva-Zatorsky, N.2
Comstock, L.E.3
-
106
-
-
84951207256
-
An interbacterial NAD(P)+ glycohydrolase toxin requires elongation factor Tu for delivery to target cells
-
Whitney, J. C., et al. An interbacterial NAD(P)+ glycohydrolase toxin requires elongation factor Tu for delivery to target cells. Cell 163, 607-619 (2015).
-
(2015)
Cell
, vol.163
, pp. 607-619
-
-
Whitney, J.C.1
-
107
-
-
84985014376
-
Strain competition restricts colonization of an enteric pathogen and prevents colitis
-
Hecht, A. L., et al. Strain competition restricts colonization of an enteric pathogen and prevents colitis. EMBO Rep. 17, 1281-1291 (2016).
-
(2016)
EMBO Rep.
, vol.17
, pp. 1281-1291
-
-
Hecht, A.L.1
-
108
-
-
0018092512
-
Increase in the population of duodenal immunoglobulin A plasmocytes in axenic mice associated with different living or dead bacterial strains of intestinal origin
-
Moreau, M. C., Ducluzeau, R., Guy-Grand, D. Increase in the population of duodenal immunoglobulin A plasmocytes in axenic mice associated with different living or dead bacterial strains of intestinal origin. Infect. Immun. 21, 532-539 (1978).
-
(1978)
Infect. Immun.
, vol.21
, pp. 532-539
-
-
Moreau, M.C.1
Ducluzeau, R.2
Guy-Grand, D.3
-
109
-
-
2942625911
-
Opinion: Interactions between commensal intestinal bacteria and the immune system
-
Macpherson, A. J., Harris, N. L. Opinion: Interactions between commensal intestinal bacteria and the immune system. Nat. Rev. Immunol. 4, 478-485 (2004).
-
(2004)
Nat. Rev. Immunol.
, vol.4
, pp. 478-485
-
-
MacPherson, A.J.1
Harris, N.L.2
-
110
-
-
84965088915
-
The response of the germfree Guinea pig to oral bacterial challenge with Escherichia coli and Shigella flexneri
-
Sprinz, H., et al. The response of the germfree guinea pig to oral bacterial challenge with Escherichia coli and Shigella flexneri. Am. J. Pathol. 39, 681-695 (1961).
-
(1961)
Am. J. Pathol.
, vol.39
, pp. 681-695
-
-
Sprinz, H.1
-
111
-
-
67349250428
-
The gut microbiota shapes intestinal immune responses during health and disease
-
Round, J. L., Mazmanian, S. K. The gut microbiota shapes intestinal immune responses during health and disease. Nat. Rev. Immunol. 9, 313-323 (2009).
-
(2009)
Nat. Rev. Immunol.
, vol.9
, pp. 313-323
-
-
Round, J.L.1
Mazmanian, S.K.2
-
112
-
-
53349173070
-
Specific microbiota direct the differentiation of IL-17-producing T-helper cells in the mucosa of the small intestine
-
Ivanov, I. I., et al. Specific microbiota direct the differentiation of IL-17-producing T-helper cells in the mucosa of the small intestine. Cell Host Microbe 4, 337-349 (2008).
-
(2008)
Cell Host Microbe
, vol.4
, pp. 337-349
-
-
Ivanov, I.I.1
-
113
-
-
77954738601
-
Inducible Foxp3+ regulatory T-cell development by a commensal bacterium of the intestinal microbiota
-
Round, J. L., Mazmanian, S. K. Inducible Foxp3+ regulatory T-cell development by a commensal bacterium of the intestinal microbiota. Proc. Natl Acad. Sci. USA 107, 12204-12209 (2010).
-
(2010)
Proc. Natl Acad. Sci. USA
, vol.107
, pp. 12204-12209
-
-
Round, J.L.1
Mazmanian, S.K.2
-
114
-
-
84992363259
-
Diverse intestinal bacteria contain putative zwitterionic capsular polysaccharides with anti-inflammatory properties
-
Neff, C. P., et al. Diverse intestinal bacteria contain putative zwitterionic capsular polysaccharides with anti-inflammatory properties. Cell Host Microbe 20, 535-547 (2016).
-
(2016)
Cell Host Microbe
, vol.20
, pp. 535-547
-
-
Neff, C.P.1
-
115
-
-
84964682615
-
Variation in microbiome LPS immunogenicity contributes to autoimmunity in humans
-
Vatanen, T., et al. Variation in microbiome LPS immunogenicity contributes to autoimmunity in humans. Cell 165, 842-853 (2016).
-
(2016)
Cell
, vol.165
, pp. 842-853
-
-
Vatanen, T.1
-
116
-
-
85027947787
-
Induction of colonic regulatory T Cells by indigenous Clostridium species
-
Atarashi, K., et al. Induction of colonic regulatory T Cells by indigenous Clostridium species. Science 331, 337-341 (2011).
-
(2011)
Science
, vol.331
, pp. 337-341
-
-
Atarashi, K.1
-
117
-
-
0029933731
-
A pathogenic bacterium triggers epithelial signals to form a functional bacterial receptor that mediates actin pseudopod formation
-
Rosenshine, I., Ruschkowski, S., Stein, M. A pathogenic bacterium triggers epithelial signals to form a functional bacterial receptor that mediates actin pseudopod formation. EMBO J. 15, 2613-2624 (1996).
-
(1996)
EMBO J.
, vol.15
, pp. 2613-2624
-
-
Rosenshine, I.1
Ruschkowski, S.2
Stein, M.3
-
118
-
-
1842508193
-
Pathogenic Escherichia coli
-
Kaper, J. B., Nataro, J. P., Mobley, H. L. T. Pathogenic Escherichia coli. Nat. Rev. Microbiol. 2, 123-140 (2004).
-
(2004)
Nat. Rev. Microbiol.
, vol.2
, pp. 123-140
-
-
Kaper, J.B.1
Nataro, J.P.2
Mobley, H.L.T.3
-
119
-
-
84920613211
-
The gut commensal Bacteroides thetaiotaomicron exacerbates enteric infection through modification of the metabolic landscape
-
Curtis, M. M., et al. The gut commensal Bacteroides thetaiotaomicron exacerbates enteric infection through modification of the metabolic landscape. Cell Host Microbe 16, 759-769 (2014).
-
(2014)
Cell Host Microbe
, vol.16
, pp. 759-769
-
-
Curtis, M.M.1
-
120
-
-
84870501494
-
Fucose sensing regulates bacterial intestinal colonization
-
Pacheco, A. R., et al. Fucose sensing regulates bacterial intestinal colonization. Nature 492, 113-117 (2012).
-
(2012)
Nature
, vol.492
, pp. 113-117
-
-
Pacheco, A.R.1
-
121
-
-
84940062118
-
Sialic acid catabolism drives intestinal inflammation and microbial dysbiosis in mice
-
Huang, Y.-L. L., Chassard, C., Hausmann, M., von Itzstein, M., Hennet, T. Sialic acid catabolism drives intestinal inflammation and microbial dysbiosis in mice. Nat. Commun. 6, 8141 (2015).
-
(2015)
Nat. Commun.
, vol.6
, pp. 8141
-
-
Huang, Y.-L.L.1
Chassard, C.2
Hausmann, M.3
Von Itzstein, M.4
Hennet, T.5
-
122
-
-
84963512940
-
Depletion of butyrate-producing Clostridia from the gut microbiota drives an aerobic luminal expansion of Salmonella
-
Rivera-Chávez, F., et al. Depletion of butyrate-producing Clostridia from the gut microbiota drives an aerobic luminal expansion of Salmonella. Cell Host Microbe 19, 443-454 (2016).
-
(2016)
Cell Host Microbe
, vol.19
, pp. 443-454
-
-
Rivera-Chávez, F.1
-
123
-
-
0028365317
-
Intraabdominal infection: A review
-
McClean, K. L., Sheehan, G. J., Harding, G. K. Intraabdominal infection: A review. Clin. Infect. Dis. 19, 100-116 (1994).
-
(1994)
Clin. Infect. Dis.
, vol.19
, pp. 100-116
-
-
McClean, K.L.1
Sheehan, G.J.2
Harding, G.K.3
-
124
-
-
0033850395
-
Aerobic and anaerobic microbiology in intra-abdominal infections associated with diverticulitis
-
Brook, I., Frazier, E. H. Aerobic and anaerobic microbiology in intra-abdominal infections associated with diverticulitis. J. Med. Microbiol. 49, 827-830 (2000).
-
(2000)
J. Med. Microbiol.
, vol.49
, pp. 827-830
-
-
Brook, I.1
Frazier, E.H.2
-
125
-
-
80054122238
-
The antibacterial lectin RegIII promotes the spatial segregation of microbiota and host in the intestine
-
Vaishnava, S., et al. The antibacterial lectin RegIII? promotes the spatial segregation of microbiota and host in the intestine. Science 334, 255-258 (2011).
-
(2011)
Science
, vol.334
, pp. 255-258
-
-
Vaishnava, S.1
-
126
-
-
85018350136
-
Studien über die bei peritonealen infektionem appendikularen ursprungs vorkommenden sauerstofftoleranten, mit besonderer berücksichtigung ihrer bedeutung für die pathogenese derartiger peritonitiden
-
Runeberg, B. Studien über die bei peritonealen infektionem appendikularen ursprungs vorkommenden sauerstofftoleranten, mit besonderer berücksichtigung ihrer bedeutung für die pathogenese derartiger peritonitiden. Arb. a. d. Path. Inst. d. Univ. Helsinfors 1, 271 (1908).
-
(1908)
Arb. A. D. Path. Inst. D. Univ. Helsinfors
, vol.1
, pp. 271
-
-
Runeberg, B.1
-
127
-
-
84940623182
-
Bakteriologische und experimentalle untersuchungen zur aetiologie der wurmfortsatzentzündung (mit besondere berücksichtigung der anaeroben bakterien)
-
Heyde, M. Bakteriologische und experimentalle untersuchungen zur aetiologie der wurmfortsatzentzündung (mit besondere berücksichtigung der anaeroben bakterien). Beitr. z. klin. Chir. 76, 1 (1911).
-
(1911)
Beitr. Z. Klin. Chir.
, vol.76
, pp. 1
-
-
Heyde, M.1
-
128
-
-
0004198066
-
-
Bailliere, Tindall, Cox
-
Castellani, A., Chalmers, A. J. Manual of Tropical Medicine (Bailliere, Tindall, Cox, 1919).
-
(1919)
Manual of Tropical Medicine
-
-
Castellani, A.1
Chalmers, A.J.2
-
130
-
-
0017618562
-
Bacteroides fragilis subspecies in clinical isolates
-
Polk, B. F., Kasper, D. L. Bacteroides fragilis subspecies in clinical isolates. Annu. Int. Med. 86, 569-571 (1977).
-
(1977)
Annu. Int. Med.
, vol.86
, pp. 569-571
-
-
Polk, B.F.1
Kasper, D.L.2
-
131
-
-
33748935159
-
LL-37, the only human member of the cathelicidin family of antimicrobial peptides
-
Dürr, U. H. N., Sudheendra, U. S., Ramamoorthy, A. LL-37, the only human member of the cathelicidin family of antimicrobial peptides. Biochim. Biophys. Acta 1758, 1408-1425 (2006).
-
(2006)
Biochim. Biophys. Acta
, vol.1758
, pp. 1408-1425
-
-
Dürr, U.H.N.1
Sudheendra, U.S.2
Ramamoorthy, A.3
-
132
-
-
0037165196
-
Antimicrobial peptides of multicellular organisms
-
Zasloff, M. Antimicrobial peptides of multicellular organisms. Nature 415, 389-395 (2002).
-
(2002)
Nature
, vol.415
, pp. 389-395
-
-
Zasloff, M.1
-
133
-
-
84923273687
-
Antimicrobial peptide resistance mediates resilience of prominent gut commensals during inflammation
-
Cullen, T. W., et al. Antimicrobial peptide resistance mediates resilience of prominent gut commensals during inflammation. Science 347, 170-175 (2015).
-
(2015)
Science
, vol.347
, pp. 170-175
-
-
Cullen, T.W.1
-
134
-
-
79959855078
-
Predicting a human gut microbiota's response to diet in gnotobiotic mice
-
Faith, J. J., McNulty, N. P., Rey, F. E., Gordon, J. I. Predicting a human gut microbiota's response to diet in gnotobiotic mice. Science 333, 101-104 (2011).
-
(2011)
Science
, vol.333
, pp. 101-104
-
-
Faith, J.J.1
McNulty, N.P.2
Rey, F.E.3
Gordon, J.I.4
-
135
-
-
80054960299
-
The impact of a consortium of fermented milk strains on the gut microbiome of gnotobiotic mice and monozygotic twins
-
McNulty, N. P., et al. The impact of a consortium of fermented milk strains on the gut microbiome of gnotobiotic mice and monozygotic twins. Sci. Transl. Med. 3, 106ra106 (2011).
-
(2011)
Sci. Transl. Med.
, vol.3
, pp. 106ra106
-
-
McNulty, N.P.1
-
136
-
-
84969504890
-
Human microbiota-associated mice: A model with challenges
-
Arrieta, M.-C. C., Walter, J., Finlay, B. B. Human microbiota-associated mice: A model with challenges. Cell Host Microbe 19, 575-578 (2016).
-
(2016)
Cell Host Microbe
, vol.19
, pp. 575-578
-
-
Arrieta, M.-C.C.1
Walter, J.2
Finlay, B.B.3
-
137
-
-
84924040920
-
Structure of the gut microbiome following colonization with human feces determines colonic tumor burden
-
Baxter, N. T., Zackular, J. P., Chen, G. Y., Schloss, P. D. Structure of the gut microbiome following colonization with human feces determines colonic tumor burden. Microbiome 2, 20 (2014).
-
(2014)
Microbiome
, vol.2
, pp. 20
-
-
Baxter, N.T.1
Zackular, J.P.2
Chen, G.Y.3
Schloss, P.D.4
-
138
-
-
84920943976
-
The rebirth of culture in microbiology through the example of culturomics to study human gut microbiota
-
Lagier, J.-C. C., et al. The rebirth of culture in microbiology through the example of culturomics to study human gut microbiota. Clin. Microbiol. Rev. 28, 237-264 (2015).
-
(2015)
Clin. Microbiol. Rev.
, vol.28
, pp. 237-264
-
-
Lagier, J.-C.C.1
-
139
-
-
84907300008
-
Immunoglobulin A coating identifies colitogenic bacteria in inflammatory bowel disease
-
Palm, N. W., et al. Immunoglobulin A coating identifies colitogenic bacteria in inflammatory bowel disease. Cell 158, 1000-1010 (2014).
-
(2014)
Cell
, vol.158
, pp. 1000-1010
-
-
Palm, N.W.1
-
140
-
-
0034090214
-
Starting a new genetic system: Lessons from Bacteroides
-
Salyers, A. A., Bonheyo, G., Shoemaker, N. B. Starting a new genetic system: Lessons from Bacteroides. Methods 20, 35-46 (2000).
-
(2000)
Methods
, vol.20
, pp. 35-46
-
-
Salyers, A.A.1
Bonheyo, G.2
Shoemaker, N.B.3
-
141
-
-
84947983159
-
Genetic determinants of in vivo fitness and diet responsiveness in multiple human gut Bacteroides
-
Wu, M., et al. Genetic determinants of in vivo fitness and diet responsiveness in multiple human gut Bacteroides. Science 350, aac5992 (2015).
-
(2015)
Science
, vol.350
, pp. aac5992
-
-
Wu, M.1
-
142
-
-
84938323503
-
Programming a human commensal bacterium, Bacteroides thetaiotaomicron, to sense and respond to stimuli in the murine gut microbiota
-
Mimee, M., Tucker, A. C., Voigt, C. A., Lu, T. K. Programming a human commensal bacterium, Bacteroides thetaiotaomicron, to sense and respond to stimuli in the murine gut microbiota. Cell Syst. 1, 62-71 (2015).
-
(2015)
Cell Syst.
, vol.1
, pp. 62-71
-
-
Mimee, M.1
Tucker, A.C.2
Voigt, C.A.3
Lu, T.K.4
-
143
-
-
84897482912
-
Programmable bacteria detect and record an environmental signal in the mammalian gut
-
Kotula, J. W., et al. Programmable bacteria detect and record an environmental signal in the mammalian gut. Proc. Natl Acad. Sci. USA 111, 4838-4843 (2014).
-
(2014)
Proc. Natl Acad. Sci. USA
, vol.111
, pp. 4838-4843
-
-
Kotula, J.W.1
-
145
-
-
84944234155
-
Quantitative imaging of gut microbiota spatial organization
-
Earle, K. A., et al. Quantitative imaging of gut microbiota spatial organization. Cell Host Microbe 18, 478-488 (2015).
-
(2015)
Cell Host Microbe
, vol.18
, pp. 478-488
-
-
Earle, K.A.1
-
146
-
-
84940984328
-
In vivo imaging and tracking of host-microbiota interactions via metabolic labeling of gut anaerobic bacteria
-
Geva-Zatorsky, N., et al. In vivo imaging and tracking of host-microbiota interactions via metabolic labeling of gut anaerobic bacteria. Nat. Med. 21, 1091-1100 (2015).
-
(2015)
Nat. Med.
, vol.21
, pp. 1091-1100
-
-
Geva-Zatorsky, N.1
-
147
-
-
84965141575
-
The gut microbiome of healthy Japanese and its microbial and functional uniqueness
-
Nishijima, S., et al. The gut microbiome of healthy Japanese and its microbial and functional uniqueness. DNA Res. 23, 125-133 (2016).
-
(2016)
DNA Res.
, vol.23
, pp. 125-133
-
-
Nishijima, S.1
|