-
1
-
-
0014605274
-
Biosynthesis of amono acids by ruminal microorganisms
-
M.J. Allison Biosynthesis of amono acids by ruminal microorganisms J. Anim. Sci. 29 1969 797 807
-
(1969)
J. Anim. Sci.
, vol.29
, pp. 797-807
-
-
Allison, M.J.1
-
2
-
-
0021682728
-
Alternative pathways for biosynthesis of leucine and other amino acids in Bacteroides ruminicola and Bacteroides fragilis
-
M.J. Allison, A.L. Baetz, and J. Wiegel Alternative pathways for biosynthesis of leucine and other amino acids in Bacteroides ruminicola and Bacteroides fragilis Appl. Environ. Microbiol. 48 1984 1111 1117 (Pubitemid 15190682)
-
(1984)
Applied and Environmental Microbiology
, vol.48
, Issue.6
, pp. 1111-1117
-
-
Allison, M.J.1
Baetz, A.L.2
Wiegel, J.3
-
3
-
-
74049097237
-
Beneficial role of green plantain [Musa paradisiaca] in the management of persistent diarrhea: A prospective randomized trial
-
T. Alvarez-Acosta, C. León, S. Acosta-González, H. Parra-Soto, I. Cluet-Rodriguez, M.R. Rossell, and J.A. Colina-Chourio Beneficial role of green plantain [Musa paradisiaca] in the management of persistent diarrhea: a prospective randomized trial J. Am. Coll. Nutr. 28 2009 169 176
-
(2009)
J. Am. Coll. Nutr.
, vol.28
, pp. 169-176
-
-
Alvarez-Acosta, T.1
León, C.2
Acosta-González, S.3
Parra-Soto, H.4
Cluet-Rodriguez, I.5
Rossell, M.R.6
Colina-Chourio, J.A.7
-
4
-
-
85027927719
-
Enterotypes of the human gut microbiome
-
MetaHIT Consortium
-
M. Arumugam, J. Raes, E. Pelletier, D. Le Paslier, T. Yamada, D.R. Mende, G.R. Fernandes, J. Tap, T. Bruls, J.M. Batto MetaHIT Consortium Enterotypes of the human gut microbiome Nature 473 2011 174 180
-
(2011)
Nature
, vol.473
, pp. 174-180
-
-
Arumugam, M.1
Raes, J.2
Pelletier, E.3
Le Paslier, D.4
Yamada, T.5
Mende, D.R.6
Fernandes, G.R.7
Tap, J.8
Bruls, T.9
Batto, J.M.10
-
5
-
-
0034023665
-
Mucin secretion is modulated by luminal factors in the isolated vascularly perfused rat colon
-
DOI 10.1136/gut.46.2.218
-
A. Barcelo, J. Claustre, F. Moro, J.A. Chayvialle, J.C. Cuber, and P. Plaisancié Mucin secretion is modulated by luminal factors in the isolated vascularly perfused rat colon Gut 46 2000 218 224 (Pubitemid 30305848)
-
(2000)
Gut
, vol.46
, Issue.2
, pp. 218-224
-
-
Barcelo, A.1
Claustre, J.2
Moro, F.3
Chayvialle, J.-A.4
Cuber, J.-C.5
Plaisancie, P.6
-
6
-
-
0034111016
-
Phylogenetic relationships of butyrate-producing bacteria from the human gut
-
DOI 10.1128/AEM.66.4.1654-1661.2000
-
A. Barcenilla, S.E. Pryde, J.C. Martin, S.H. Duncan, C.S. Stewart, C. Henderson, and H.J. Flint Phylogenetic relationships of butyrate-producing bacteria from the human gut Appl. Environ. Microbiol. 66 2000 1654 1661 (Pubitemid 30185646)
-
(2000)
Applied and Environmental Microbiology
, vol.66
, Issue.4
, pp. 1654-1661
-
-
Barcenilla, A.1
Pryde, S.E.2
Martin, J.C.3
Duncan, S.H.4
Stewart, C.S.5
Henderson, C.6
Flint, H.J.7
-
7
-
-
0019363132
-
Amino acid degradation by anaerobic bacteria
-
H.A. Barker Amino acid degradation by anaerobic bacteria Annu. Rev. Biochem. 50 1981 23 40
-
(1981)
Annu. Rev. Biochem.
, vol.50
, pp. 23-40
-
-
Barker, H.A.1
-
8
-
-
33646032683
-
Bacterially speaking
-
B.L. Bassler, and R. Losick Bacterially speaking Cell 125 2006 237 246
-
(2006)
Cell
, vol.125
, pp. 237-246
-
-
Bassler, B.L.1
Losick, R.2
-
9
-
-
0038480719
-
The essential role of fumarate reductase in haem-dependent growth stimulation of Bacteroides fragilis
-
A.D. Baughn, and M.H. Malamy The essential role of fumarate reductase in haem-dependent growth stimulation of Bacteroides fragilis Microbiology 149 2003 1551 1558 (Pubitemid 36764078)
-
(2003)
Microbiology
, vol.149
, Issue.6
, pp. 1551-1558
-
-
Baughn, A.D.1
Malamy, M.H.2
-
10
-
-
33750331207
-
Radical enzymes in anaerobes
-
DOI 10.1146/annurev.micro.60.080805.142216
-
W. Buckel, and B.T. Golding Radical enzymes in anaerobes Annu. Rev. Microbiol. 60 2006 27 49 (Pubitemid 44627939)
-
(2006)
Annual Review of Microbiology
, vol.60
, pp. 27-49
-
-
Buckel, W.1
Golding, B.T.2
-
11
-
-
66549120804
-
The regulation of intestinal mucin MUC2 expression by short-chain fatty acids: Implications for epithelial protection
-
N. Burger-van Paassen, A. Vincent, P.J. Puiman, M. van der Sluis, J. Bouma, G. Boehm, J.B. van Goudoever, I. van Seuningen, and I.B. Renes The regulation of intestinal mucin MUC2 expression by short-chain fatty acids: implications for epithelial protection Biochem. J. 420 2009 211 219
-
(2009)
Biochem. J.
, vol.420
, pp. 211-219
-
-
Burger-Van Paassen, N.1
Vincent, A.2
Puiman, P.J.3
Van Der Sluis, M.4
Bouma, J.5
Boehm, G.6
Van Goudoever, J.B.7
Van Seuningen, I.8
Renes, I.B.9
-
12
-
-
0020617361
-
The role of carbon dioxide in glucose metabolism of Bacteroides fragilis
-
D. Caspari, and J.M. Macy The role of carbon dioxide in glucose metabolism of Bacteroides fragilis Arch. Microbiol. 135 1983 16 24 (Pubitemid 13033530)
-
(1983)
Archives of Microbiology
, vol.135
, Issue.1
, pp. 16-24
-
-
Caspari, D.1
Macy, J.M.2
-
13
-
-
33645051439
-
H2 and acetate transfers during xylan fermentation between a butyrate-producing xylanolytic species and hydrogenotrophic microorganisms from the human gut
-
C. Chassard, and A. Bernalier-Donadille H2 and acetate transfers during xylan fermentation between a butyrate-producing xylanolytic species and hydrogenotrophic microorganisms from the human gut FEMS Microbiol. Lett. 254 2006 116 122
-
(2006)
FEMS Microbiol. Lett.
, vol.254
, pp. 116-122
-
-
Chassard, C.1
Bernalier-Donadille, A.2
-
14
-
-
0019475138
-
12 on growth and fermentations of Bacteroides species
-
M. Chen, and M.J. Wolin Influence of heme and vitamin B12 on growth and fermentations of Bacteroides species J. Bacteriol. 145 1981 466 471 (Pubitemid 11140328)
-
(1981)
Journal of Bacteriology
, vol.145
, Issue.1
, pp. 466-471
-
-
Chen, M.1
Wolin, M.J.2
-
15
-
-
0026554422
-
Parameters Affecting Solvent Production by Clostridium pasteurianum
-
B. Dabrock, H. Bahl, and G. Gottschalk Parameters Affecting Solvent Production by Clostridium pasteurianum Appl. Environ. Microbiol. 58 1992 1233 1239
-
(1992)
Appl. Environ. Microbiol.
, vol.58
, pp. 1233-1239
-
-
Dabrock, B.1
Bahl, H.2
Gottschalk, G.3
-
16
-
-
77957075815
-
Impact of diet in shaping gut microbiota revealed by a comparative study in children from Europe and rural Africa
-
C. De Filippo, D. Cavalieri, M. Di Paola, M. Ramazzotti, J.B. Poullet, S. Massart, S. Collini, G. Pieraccini, and P. Lionetti Impact of diet in shaping gut microbiota revealed by a comparative study in children from Europe and rural Africa Proc. Natl. Acad. Sci. USA 107 2010 14691 14696
-
(2010)
Proc. Natl. Acad. Sci. USA
, vol.107
, pp. 14691-14696
-
-
De Filippo, C.1
Cavalieri, D.2
Di Paola, M.3
Ramazzotti, M.4
Poullet, J.B.5
Massart, S.6
Collini, S.7
Pieraccini, G.8
Lionetti, P.9
-
17
-
-
0014984680
-
Carbon dioxide requirement of various species of rumen bacteria
-
B.A. Dehority Carbon dioxide requirement of various species of rumen bacteria J. Bacteriol. 105 1971 70 76
-
(1971)
J. Bacteriol.
, vol.105
, pp. 70-76
-
-
Dehority, B.A.1
-
18
-
-
79952756960
-
Incomplete recovery and individualized responses of the human distal gut microbiota to repeated antibiotic perturbation
-
L. Dethlefsen, and D.A. Relman Incomplete recovery and individualized responses of the human distal gut microbiota to repeated antibiotic perturbation Proc. Natl. Acad. Sci. USA 108 Suppl 1 2011 4554 4561
-
(2011)
Proc. Natl. Acad. Sci. USA
, vol.108
, Issue.SUPPL 1
, pp. 4554-4561
-
-
Dethlefsen, L.1
Relman, D.A.2
-
19
-
-
56849106496
-
The pervasive effects of an antibiotic on the human gut microbiota, as revealed by deep 16S rRNA sequencing
-
L. Dethlefsen, S. Huse, M.L. Sogin, and D.A. Relman The pervasive effects of an antibiotic on the human gut microbiota, as revealed by deep 16S rRNA sequencing PLoS Biol. 6 2008 e280
-
(2008)
PLoS Biol.
, vol.6
, pp. 280
-
-
Dethlefsen, L.1
Huse, S.2
Sogin, M.L.3
Relman, D.A.4
-
20
-
-
0012492489
-
The Effect of Antibiotics on Urea Breakdown in Mice
-
R.Z. Dintzis, and A.B. Hastings The Effect of Antibiotics on Urea Breakdown in Mice Proc. Natl. Acad. Sci. USA 39 1953 571 578
-
(1953)
Proc. Natl. Acad. Sci. USA
, vol.39
, pp. 571-578
-
-
Dintzis, R.Z.1
Hastings, A.B.2
-
21
-
-
8144224956
-
Lactate-utilizing bacteria, isolated from human feces, that produce butyrate as a major fermentation product
-
DOI 10.1128/AEM.70.10.5810-5817.2004
-
S.H. Duncan, P. Louis, and H.J. Flint Lactate-utilizing bacteria, isolated from human feces, that produce butyrate as a major fermentation product Appl. Environ. Microbiol. 70 2004 5810 5817 (Pubitemid 39471821)
-
(2004)
Applied and Environmental Microbiology
, vol.70
, Issue.10
, pp. 5810-5817
-
-
Duncan, S.H.1
Louis, P.2
Flint, H.J.3
-
22
-
-
68249110221
-
The role of pH in determining the species composition of the human colonic microbiota
-
S.H. Duncan, P. Louis, J.M. Thomson, and H.J. Flint The role of pH in determining the species composition of the human colonic microbiota Environ. Microbiol. 11 2009 2112 2122
-
(2009)
Environ. Microbiol.
, vol.11
, pp. 2112-2122
-
-
Duncan, S.H.1
Louis, P.2
Thomson, J.M.3
Flint, H.J.4
-
23
-
-
77952979824
-
The architecture of respiratory complex i
-
R.G. Efremov, R. Baradaran, and L.A. Sazanov The architecture of respiratory complex I Nature 465 2010 441 445
-
(2010)
Nature
, vol.465
, pp. 441-445
-
-
Efremov, R.G.1
Baradaran, R.2
Sazanov, L.A.3
-
24
-
-
0028001371
-
Similar 24-h pattern and rate of carbon dioxide production, by indirect calorimetry vs. stable isotope dilution, in healthy adults under standardized metabolic conditions
-
A.E. el-Khoury, M. Sánchez, N.K. Fukagawa, R.E. Gleason, and V.R. Young Similar 24-h pattern and rate of carbon dioxide production, by indirect calorimetry vs. stable isotope dilution, in healthy adults under standardized metabolic conditions J. Nutr. 124 1994 1615 1627 (Pubitemid 24299562)
-
(1994)
Journal of Nutrition
, vol.124
, Issue.9
, pp. 1615-1627
-
-
El-Khoury, A.E.1
Sanchez, M.2
Fukagawa, N.K.3
Gleason, R.E.4
Young, V.R.5
-
25
-
-
79959855078
-
Predicting a human gut microbiota's response to diet in gnotobiotic mice
-
J.J. Faith, N.P. McNulty, F.E. Rey, and J.I. Gordon Predicting a human gut microbiota's response to diet in gnotobiotic mice Science 333 2011 101 104
-
(2011)
Science
, vol.333
, pp. 101-104
-
-
Faith, J.J.1
McNulty, N.P.2
Rey, F.E.3
Gordon, J.I.4
-
27
-
-
0001794426
-
In vivo and in vitro antagonism of intestinal bacteria against Shigellaflexneri. II. The inhibitory mechanism
-
R. Freter In vivo and in vitro antagonism of intestinal bacteria against Shigellaflexneri. II. The inhibitory mechanism J. Infect. Dis. 110 1962 38 46
-
(1962)
J. Infect. Dis.
, vol.110
, pp. 38-46
-
-
Freter, R.1
-
28
-
-
69949123813
-
Identifying genetic determinants needed to establish a human gut symbiont in its habitat
-
A.L. Goodman, N.P. McNulty, Y. Zhao, D. Leip, R.D. Mitra, C.A. Lozupone, R. Knight, and J.I. Gordon Identifying genetic determinants needed to establish a human gut symbiont in its habitat Cell Host Microbe 6 2009 279 289
-
(2009)
Cell Host Microbe
, vol.6
, pp. 279-289
-
-
Goodman, A.L.1
McNulty, N.P.2
Zhao, Y.3
Leip, D.4
Mitra, R.D.5
Lozupone, C.A.6
Knight, R.7
Gordon, J.I.8
-
29
-
-
77950847866
-
Transfer of carbohydrate-active enzymes from marine bacteria to Japanese gut microbiota
-
J.H. Hehemann, G. Correc, T. Barbeyron, W. Helbert, M. Czjzek, and G. Michel Transfer of carbohydrate-active enzymes from marine bacteria to Japanese gut microbiota Nature 464 2010 908 912
-
(2010)
Nature
, vol.464
, pp. 908-912
-
-
Hehemann, J.H.1
Correc, G.2
Barbeyron, T.3
Helbert, W.4
Czjzek, M.5
Michel, G.6
-
30
-
-
0023161150
-
Proton and bicarbonate transport mechanisms in the intestine
-
U. Hopfer, and C.M. Liedtke Proton and bicarbonate transport mechanisms in the intestine Annu. Rev. Physiol. 49 1987 51 67 (Pubitemid 17053881)
-
(1987)
Annual Review of Physiology
, vol.49
, pp. 51-67
-
-
Hopfer, U.1
Liedtke, C.M.2
-
31
-
-
3042712911
-
Commensal bacteria, redox stress, and colorectal cancer: Mechanisms and models
-
M.M. Huycke, and H.R. Gaskins Commensal bacteria, redox stress, and colorectal cancer: mechanisms and models Exp. Biol. Med. (Maywood) 229 2004 586 597 (Pubitemid 38885671)
-
(2004)
Experimental Biology and Medicine
, vol.229
, Issue.7
, pp. 586-597
-
-
Huycke, M.M.1
Gaskin, H.R.2
-
33
-
-
79952763661
-
Succession of microbial consortia in the developing infant gut microbiome
-
J.E. Koenig, A. Spor, N. Scalfone, A.D. Fricker, J. Stombaugh, R. Knight, L.T. Angenent, and R.E. Ley Succession of microbial consortia in the developing infant gut microbiome Proc. Natl. Acad. Sci. USA 108 Suppl 1 2011 4578 4585
-
(2011)
Proc. Natl. Acad. Sci. USA
, vol.108
, Issue.SUPPL 1
, pp. 4578-4585
-
-
Koenig, J.E.1
Spor, A.2
Scalfone, N.3
Fricker, A.D.4
Stombaugh, J.5
Knight, R.6
Angenent, L.T.7
Ley, R.E.8
-
34
-
-
34948828520
-
A double-blind placebo-controlled study to establish the bifidogenic dose of inulin in healthy humans
-
DOI 10.1038/sj.ejcn.1602636, PII 1602636
-
S. Kolida, D. Meyer, and G.R. Gibson A double-blind placebo-controlled study to establish the bifidogenic dose of inulin in healthy humans Eur. J. Clin. Nutr. 61 2007 1189 1195 (Pubitemid 47521550)
-
(2007)
European Journal of Clinical Nutrition
, vol.61
, Issue.10
, pp. 1189-1195
-
-
Kolida, S.1
Meyer, D.2
Gibson, G.R.3
-
35
-
-
0026743168
-
Bacterial fumarate respiration
-
A. Kroger, V. Geisler, E. Lemma, F. Theis, and R. Lenger Bacterial fumarate respiration Arch. Microbiol. 158 1992 311 314
-
(1992)
Arch. Microbiol.
, vol.158
, pp. 311-314
-
-
Kroger, A.1
Geisler, V.2
Lemma, E.3
Theis, F.4
Lenger, R.5
-
36
-
-
0010049951
-
Structure of fumarate reductase from Wolinella succinogenes at 2.2 A resolution
-
C.R. Lancaster, A. Kröger, M. Auer, and H. Michel Structure of fumarate reductase from Wolinella succinogenes at 2.2 A resolution Nature 402 1999 377 385 (Pubitemid 129544818)
-
(1999)
Nature
, vol.402
, Issue.6760
, pp. 377-385
-
-
Lancaster, C.R.D.1
Kroger, A.2
Auer, M.3
Michel, H.4
-
37
-
-
37749008130
-
Host transmission of Salmonella enterica serovar Typhimurium is controlled by virulence factors and indigenous intestinal microbiota
-
T.D. Lawley, D.M. Bouley, Y.E. Hoy, C. Gerke, D.A. Relman, and D.M. Monack Host transmission of Salmonella enterica serovar Typhimurium is controlled by virulence factors and indigenous intestinal microbiota Infect. Immun. 76 2008 403 416
-
(2008)
Infect. Immun.
, vol.76
, pp. 403-416
-
-
Lawley, T.D.1
Bouley, D.M.2
Hoy, Y.E.3
Gerke, C.4
Relman, D.A.5
Monack, D.M.6
-
39
-
-
0032410739
-
Fecal hydrogen sulfide production in ulcerative colitis
-
DOI 10.1111/j.1572-0241.1998.083-c.x, PII S0002927097000282
-
J. Levine, C.J. Ellis, J.K. Furne, J. Springfield, and M.D. Levitt Fecal hydrogen sulfide production in ulcerative colitis Am. J. Gastroenterol. 93 1998 83 87 (Pubitemid 29065520)
-
(1998)
American Journal of Gastroenterology
, vol.93
, Issue.1
, pp. 83-87
-
-
Levine, J.1
Ellis, C.J.2
Furne, J.K.3
Springfield, J.4
Levitt, M.D.5
-
40
-
-
34247371381
-
Understanding the effects of diet on bacterial metabolism in the large intestine
-
DOI 10.1111/j.1365-2672.2007.03322.x
-
P. Louis, K.P. Scott, S.H. Duncan, and H.J. Flint Understanding the effects of diet on bacterial metabolism in the large intestine J. Appl. Microbiol. 102 2007 1197 1208 (Pubitemid 46633434)
-
(2007)
Journal of Applied Microbiology
, vol.102
, Issue.5
, pp. 1197-1208
-
-
Louis, P.1
Scott, K.P.2
Duncan, S.H.3
Flint, H.J.4
-
41
-
-
0022500979
-
Proline reduction by Clostridium sporogenes is coupled to vectorial proton ejection
-
R.W. Lovitt, D.B. Kell, and J.G. Morriss Proline reduction by Clostridium sporogenes is coupled to vectorial proton ejection FEMS Microbiol. Lett. 36 1986 269 273 (Pubitemid 16021068)
-
(1986)
FEMS Microbiology Letters
, vol.36
, Issue.2-3
, pp. 269-273
-
-
Lovitt, R.W.1
Kell, D.B.2
Morris, J.G.3
-
42
-
-
0026424312
-
Formation of glycoprotein degrading enzymes by Bacteroides fragilis
-
G.T. Macfarlane, and G.R. Gibson Formation of glycoprotein degrading enzymes by Bacteroides fragilis FEMS Microbiol. Lett. 61 1991 289 293
-
(1991)
FEMS Microbiol. Lett.
, vol.61
, pp. 289-293
-
-
MacFarlane, G.T.1
Gibson, G.R.2
-
43
-
-
0018338356
-
The biology of gastrointestinal bacteroides
-
J.M. Macy, and I. Probst The biology of gastrointestinal bacteroides Annu. Rev. Microbiol. 33 1979 561 594
-
(1979)
Annu. Rev. Microbiol.
, vol.33
, pp. 561-594
-
-
MacY, J.M.1
Probst, I.2
-
44
-
-
0018142446
-
Pathway of succinate and propionate formation in Bacteroides fragilis
-
J.M. Macy, L.G. Ljungdahl, and G. Gottschalk Pathway of succinate and propionate formation in Bacteroides fragilis J. Bacteriol. 134 1978 84 91 (Pubitemid 8334690)
-
(1978)
Journal of Bacteriology
, vol.134
, Issue.1
, pp. 84-91
-
-
Macy, J.M.1
Ljungdahl, L.G.2
Gottschalk, G.3
-
45
-
-
65249149643
-
Characterizing a model human gut microbiota composed of members of its two dominant bacterial phyla
-
M.A. Mahowald, F.E. Rey, H. Seedorf, P.J. Turnbaugh, R.S. Fulton, A. Wollam, N. Shah, C. Wang, V. Magrini, and R.K. Wilson Characterizing a model human gut microbiota composed of members of its two dominant bacterial phyla Proc. Natl. Acad. Sci. USA 106 2009 5859 5864
-
(2009)
Proc. Natl. Acad. Sci. USA
, vol.106
, pp. 5859-5864
-
-
Mahowald, M.A.1
Rey, F.E.2
Seedorf, H.3
Turnbaugh, P.J.4
Fulton, R.S.5
Wollam, A.6
Shah, N.7
Wang, C.8
Magrini, V.9
Wilson, R.K.10
-
46
-
-
80054886353
-
Bacteroides in the infant gut consume milk oligosaccharides via mucus-utilization pathways
-
10.1016/j.chom.2011.10.007 in press
-
A. Marcobal, M. Barboza, E.D. Sonnenburg, N. Pudlo, E.C. Martens, P. Desai, C.B. Lebrilla, B.C. Weimer, D.A. Mills, J.B. German, and J.L. Sonnenburg Bacteroides in the infant gut consume milk oligosaccharides via mucus-utilization pathways Cell Host Microbe 10 2011 10.1016/j.chom.2011.10.007 in press
-
(2011)
Cell Host Microbe
, vol.10
-
-
Marcobal, A.1
Barboza, M.2
Sonnenburg, E.D.3
Pudlo, N.4
Martens, E.C.5
Desai, P.6
Lebrilla, C.B.7
Weimer, B.C.8
Mills, D.A.9
German, J.B.10
Sonnenburg, J.L.11
-
47
-
-
55249108031
-
Mucosal glycan foraging enhances fitness and transmission of a saccharolytic human gut bacterial symbiont
-
E.C. Martens, H.C. Chiang, and J.I. Gordon Mucosal glycan foraging enhances fitness and transmission of a saccharolytic human gut bacterial symbiont Cell Host Microbe 4 2008 447 457
-
(2008)
Cell Host Microbe
, vol.4
, pp. 447-457
-
-
Martens, E.C.1
Chiang, H.C.2
Gordon, J.I.3
-
48
-
-
78649734540
-
Resistant starches types 2 and 4 have differential effects on the composition of the fecal microbiota in human subjects
-
I. Martínez, J. Kim, P.R. Duffy, V.L. Schlegel, and J. Walter Resistant starches types 2 and 4 have differential effects on the composition of the fecal microbiota in human subjects PLoS ONE 5 2010 e15046
-
(2010)
PLoS ONE
, vol.5
, pp. 15046
-
-
Martínez, I.1
Kim, J.2
Duffy, P.R.3
Schlegel, V.L.4
Walter, J.5
-
49
-
-
0015083679
-
The amino acid-fermenting clostridia
-
G.C. Mead The amino acid-fermenting clostridia J. Gen. Microbiol. 67 1971 47 56
-
(1971)
J. Gen. Microbiol.
, vol.67
, pp. 47-56
-
-
Mead, G.C.1
-
50
-
-
0020031173
-
Enumeration of Methanobrevibacter smithii in human feces
-
DOI 10.1007/BF00451492
-
T.L. Miller, and M.J. Wolin Enumeration of Methanobrevibacter smithii in human feces Arch. Microbiol. 131 1982 14 18 (Pubitemid 12153065)
-
(1982)
Archives of Microbiology
, vol.131
, Issue.1
, pp. 14-18
-
-
Miller, T.L.1
Wolin, M.J.2
-
51
-
-
67649519024
-
Green banana reduces clinical severity of childhood shigellosis: A double-blind, randomized, controlled clinical trial
-
G.H. Rabbani, S. Ahmed, I. Hossain, R. Islam, F. Marni, M. Akhtar, and N. Majid Green banana reduces clinical severity of childhood shigellosis: a double-blind, randomized, controlled clinical trial Pediatr. Infect. Dis. J. 28 2009 420 425
-
(2009)
Pediatr. Infect. Dis. J.
, vol.28
, pp. 420-425
-
-
Rabbani, G.H.1
Ahmed, S.2
Hossain, I.3
Islam, R.4
Marni, F.5
Akhtar, M.6
Majid, N.7
-
52
-
-
63849164050
-
Effect of inulin on the human gut microbiota: Stimulation of Bifidobacterium adolescentis and Faecalibacterium prausnitzii
-
C. Ramirez-Farias, K. Slezak, Z. Fuller, A. Duncan, G. Holtrop, and P. Louis Effect of inulin on the human gut microbiota: stimulation of Bifidobacterium adolescentis and Faecalibacterium prausnitzii Br. J. Nutr. 101 2009 541 550
-
(2009)
Br. J. Nutr.
, vol.101
, pp. 541-550
-
-
Ramirez-Farias, C.1
Slezak, K.2
Fuller, Z.3
Duncan, A.4
Holtrop, G.5
Louis, P.6
-
53
-
-
77954566982
-
Dissecting the in vivo metabolic potential of two human gut acetogens
-
F.E. Rey, J.J. Faith, J. Bain, M.J. Muehlbauer, R.D. Stevens, C.B. Newgard, and J.I. Gordon Dissecting the in vivo metabolic potential of two human gut acetogens J. Biol. Chem. 285 2010 22082 22090
-
(2010)
J. Biol. Chem.
, vol.285
, pp. 22082-22090
-
-
Rey, F.E.1
Faith, J.J.2
Bain, J.3
Muehlbauer, M.J.4
Stevens, R.D.5
Newgard, C.B.6
Gordon, J.I.7
-
54
-
-
0015857730
-
Biosynthetic precursors of vitamin K as growth promoters for Bacteroides melaninogenicus
-
D.J. Robins, R.B. Yee, and R. Bentley Biosynthetic precursors of vitamin K as growth promoters for Bacteroides melaninogenicus J. Bacteriol. 116 1973 965 971
-
(1973)
J. Bacteriol.
, vol.116
, pp. 965-971
-
-
Robins, D.J.1
Yee, R.B.2
Bentley, R.3
-
55
-
-
0017381987
-
Fermentation of mucin and plant polysaccharides by strains of Bacteroides from the human colon
-
A.A. Salyers, J.R. Vercellotti, S.E. West, and T.D. Wilkins Fermentation of mucin and plant polysaccharides by strains of Bacteroides from the human colon Appl. Environ. Microbiol. 33 1977 319 322 (Pubitemid 8099781)
-
(1977)
Applied and Environmental Microbiology
, vol.33
, Issue.2
, pp. 319-322
-
-
Salyers, A.A.1
Vercellotti, J.R.2
West, S.E.H.3
Wilkins, T.D.4
-
56
-
-
0017750010
-
Fermentation of mucins and plant polysaccharides by anaerobic bacteria from the human colon
-
A.A. Salyers, S.E. West, J.R. Vercellotti, and T.D. Wilkins Fermentation of mucins and plant polysaccharides by anaerobic bacteria from the human colon Appl. Environ. Microbiol. 34 1977 529 533 (Pubitemid 8231317)
-
(1977)
Applied and Environmental Microbiology
, vol.34
, Issue.5
, pp. 529-533
-
-
Salyers, A.A.1
West, S.E.H.2
Vercellotti, J.R.3
Wilkins, T.D.4
-
58
-
-
0019497228
-
Reevaluation of nitrate and nitrite levels in the human intestine
-
R.L. Saul, S.H. Kabir, Z. Cohen, W.R. Bruce, and M.C. Archer Reevaluation of nitrate and nitrite levels in the human intestine Cancer Res. 41 1981 2280 2283 (Pubitemid 11111429)
-
(1981)
Cancer Research
, vol.41
, Issue.6
, pp. 2280-2283
-
-
Saul, R.L.1
Kabir, S.H.2
Cohen, Z.3
-
59
-
-
79952765513
-
Substrate-driven gene expression in Roseburia inulinivorans: Importance of inducible enzymes in the utilization of inulin and starch
-
K.P. Scott, J.C. Martin, C. Chassard, M. Clerget, J. Potrykus, G. Campbell, C.D. Mayer, P. Young, G. Rucklidge, A.G. Ramsay, and H.J. Flint Substrate-driven gene expression in Roseburia inulinivorans: importance of inducible enzymes in the utilization of inulin and starch Proc. Natl. Acad. Sci. USA 108 Suppl 1 2011 4672 4679
-
(2011)
Proc. Natl. Acad. Sci. USA
, vol.108
, Issue.SUPPL 1
, pp. 4672-4679
-
-
Scott, K.P.1
Martin, J.C.2
Chassard, C.3
Clerget, M.4
Potrykus, J.5
Campbell, G.6
Mayer, C.D.7
Young, P.8
Rucklidge, G.9
Ramsay, A.G.10
Flint, H.J.11
-
60
-
-
0016441787
-
Minimal growth requirements for Clostridium perfringens and isolation of auxotrophic mutants
-
M. Sebald, and R.N. Costilow Minimal growth requirements for Clostridium perfringens and isolation of auxotrophic mutants Appl. Microbiol. 29 1975 1 6
-
(1975)
Appl. Microbiol.
, vol.29
, pp. 1-6
-
-
Sebald, M.1
Costilow, R.N.2
-
61
-
-
0034029729
-
Short chain fatty acids but not lactate or succinate stimulate mucus release in the rat colon
-
DOI 10.1016/S1095-6433(00)00183-5, PII S1095643300001835
-
A. Shimotoyodome, S. Meguro, T. Hase, I. Tokimitsu, and T. Sakata Short chain fatty acids but not lactate or succinate stimulate mucus release in the rat colon Comp. Biochem. Physiol. A Mol. Integr. Physiol. 125 2000 525 531 (Pubitemid 30330771)
-
(2000)
Comparative Biochemistry and Physiology - A Molecular and Integrative Physiology
, vol.125
, Issue.4
, pp. 525-531
-
-
Shimotoyodome, A.1
Meguro, S.2
Hase, T.3
Tokimitsu, I.4
Sakata, T.5
-
62
-
-
0030047157
-
Molecular analysis of the anaerobic succinate degradation pathway in Clostridium kluyveri
-
B. Söhling, and G. Gottschalk Molecular analysis of the anaerobic succinate degradation pathway in Clostridium kluyveri J. Bacteriol. 178 1996 871 880 (Pubitemid 26036662)
-
(1996)
Journal of Bacteriology
, vol.178
, Issue.3
, pp. 871-880
-
-
Sohling, B.1
Gottschalk, G.2
-
63
-
-
15544376418
-
Glycan foraging in vivo by an intestine-adapted bacterial symbiont
-
DOI 10.1126/science.1109051
-
J.L. Sonnenburg, J. Xu, D.D. Leip, C.H. Chen, B.P. Westover, J. Weatherford, J.D. Buhler, and J.I. Gordon Glycan foraging in vivo by an intestine-adapted bacterial symbiont Science 307 2005 1955 1959 (Pubitemid 40404703)
-
(2005)
Science
, vol.307
, Issue.5717
, pp. 1955-1959
-
-
Sonnenburg, J.L.1
Xu, J.2
Leip, D.D.3
Chen, C.-H.4
Westover, B.P.5
Weatherford, J.6
Buhler, J.D.7
Gordon, J.I.8
-
64
-
-
33845508443
-
Genomic and metabolic studies of the impact of probiotics on a model gut symbiont and host
-
J.L. Sonnenburg, C.T. Chen, and J.I. Gordon Genomic and metabolic studies of the impact of probiotics on a model gut symbiont and host PLoS Biol. 4 2006 e413
-
(2006)
PLoS Biol.
, vol.4
, pp. 413
-
-
Sonnenburg, J.L.1
Chen, C.T.2
Gordon, J.I.3
-
65
-
-
77953901767
-
Specificity of polysaccharide use in intestinal bacteroides species determines diet-induced microbiota alterations
-
E.D. Sonnenburg, H. Zheng, P. Joglekar, S.K. Higginbottom, S.J. Firbank, D.N. Bolam, and J.L. Sonnenburg Specificity of polysaccharide use in intestinal bacteroides species determines diet-induced microbiota alterations Cell 141 2010 1241 1252
-
(2010)
Cell
, vol.141
, pp. 1241-1252
-
-
Sonnenburg, E.D.1
Zheng, H.2
Joglekar, P.3
Higginbottom, S.K.4
Firbank, S.J.5
Bolam, D.N.6
Sonnenburg, J.L.7
-
66
-
-
35649026345
-
Salmonella enterica serovar typhimurium exploits inflammation to compete with the intestinal microbiota
-
DOI 10.1371/journal.pbio.0050244
-
B. Stecher, R. Robbiani, A.W. Walker, A.M. Westendorf, M. Barthel, M. Kremer, S. Chaffron, A.J. Macpherson, J. Buer, and J. Parkhill Salmonella enterica serovar typhimurium exploits inflammation to compete with the intestinal microbiota PLoS Biol. 5 2007 2177 2189 (Pubitemid 350035420)
-
(2007)
PLoS Biology
, vol.5
, Issue.10
, pp. 2177-2189
-
-
Stecher, B.1
Robbiani, R.2
Walker, A.W.3
Westendorf, A.M.4
Barthel, M.5
Kremer, M.6
Chaffron, S.7
Macpherson, A.J.8
Buer, J.9
Parkhill, J.10
Dougan, G.11
Von Mering, C.12
Hardt, W.-D.13
-
67
-
-
77649209317
-
Like will to like: Abundances of closely related species can predict susceptibility to intestinal colonization by pathogenic and commensal bacteria
-
B. Stecher, S. Chaffron, R. Käppeli, S. Hapfelmeier, S. Freedrich, T.C. Weber, J. Kirundi, M. Suar, K.D. McCoy, and C. von Mering Like will to like: abundances of closely related species can predict susceptibility to intestinal colonization by pathogenic and commensal bacteria PLoS Pathog. 6 2010 e1000711
-
(2010)
PLoS Pathog.
, vol.6
, pp. 1000711
-
-
Stecher, B.1
Chaffron, S.2
Käppeli, R.3
Hapfelmeier, S.4
Freedrich, S.5
Weber, T.C.6
Kirundi, J.7
Suar, M.8
McCoy, K.D.9
Von Mering, C.10
-
68
-
-
58749112734
-
A core gut microbiome in obese and lean twins
-
P.J. Turnbaugh, M. Hamady, T. Yatsunenko, B.L. Cantarel, A. Duncan, R.E. Ley, M.L. Sogin, W.J. Jones, B.A. Roe, and J.P. Affourtit A core gut microbiome in obese and lean twins Nature 457 2009 480 484
-
(2009)
Nature
, vol.457
, pp. 480-484
-
-
Turnbaugh, P.J.1
Hamady, M.2
Yatsunenko, T.3
Cantarel, B.L.4
Duncan, A.5
Ley, R.E.6
Sogin, M.L.7
Jones, W.J.8
Roe, B.A.9
Affourtit, J.P.10
-
69
-
-
77957979642
-
Comparative metagenomics and population dynamics of the gut microbiota in mother and infant
-
P.A. Vaishampayan, J.V. Kuehl, J.L. Froula, J.L. Morgan, H. Ochman, and M.P. Francino Comparative metagenomics and population dynamics of the gut microbiota in mother and infant Genome Biol Evol 2 2010 53 66
-
(2010)
Genome Biol Evol
, vol.2
, pp. 53-66
-
-
Vaishampayan, P.A.1
Kuehl, J.V.2
Froula, J.L.3
Morgan, J.L.4
Ochman, H.5
Francino, M.P.6
-
70
-
-
0015125894
-
Colonization resistance of the digestive tract in conventional and antibiotic-treated mice
-
D. van der Waaij, J.M. Berghuis-de Vries, and Lekkerkerk Lekkerkerk-v Colonization resistance of the digestive tract in conventional and antibiotic-treated mice J. Hyg. (Lond.) 69 1971 405 411
-
(1971)
J. Hyg. (Lond.)
, vol.69
, pp. 405-411
-
-
Van Der Waaij, D.1
Berghuis-De Vries, J.M.2
Lekkerkerk-V, L.3
-
71
-
-
0016216108
-
Nutritional features of Bacteroides fragilis subsp. fragilis
-
V.H. Varel, and M.P. Bryant Nutritional features of Bacteroides fragilis subsp. fragilis Appl. Microbiol. 28 1974 251 257
-
(1974)
Appl. Microbiol.
, vol.28
, pp. 251-257
-
-
Varel, V.H.1
Bryant, M.P.2
-
72
-
-
78751580602
-
Dominant and diet-responsive groups of bacteria within the human colonic microbiota
-
A.W. Walker, J. Ince, S.H. Duncan, L.M. Webster, G. Holtrop, X. Ze, D. Brown, M.D. Stares, P. Scott, and A. Bergerat Dominant and diet-responsive groups of bacteria within the human colonic microbiota ISME J. 5 2011 220 230
-
(2011)
ISME J.
, vol.5
, pp. 220-230
-
-
Walker, A.W.1
Ince, J.2
Duncan, S.H.3
Webster, L.M.4
Holtrop, G.5
Ze, X.6
Brown, D.7
Stares, M.D.8
Scott, P.9
Bergerat, A.10
-
74
-
-
40849111497
-
Catabolic pathway for the production of skatole and indoleacetic acid by the acetogen Clostridium drakei, Clostridium scatologenes, and swine manure
-
DOI 10.1128/AEM.02458-07
-
T.R. Whitehead, N.P. Price, H.L. Drake, and M.A. Cotta Catabolic pathway for the production of skatole and indoleacetic acid by the acetogen Clostridium drakei, Clostridium scatologenes, and swine manure Appl. Environ. Microbiol. 74 2008 1950 1953 (Pubitemid 351400154)
-
(2008)
Applied and Environmental Microbiology
, vol.74
, Issue.6
, pp. 1950-1953
-
-
Whitehead, T.R.1
Price, N.P.2
Drake, H.L.3
Cotta, M.A.4
-
75
-
-
0016767104
-
Effect of microflora on the free amino acid distribution in various regions of the mouse gastrointestinal tract
-
D.D. Whitt, and R.D. Demoss Effect of microflora on the free amino acid distribution in various regions of the mouse gastrointestinal tract Appl. Microbiol. 30 1975 609 615
-
(1975)
Appl. Microbiol.
, vol.30
, pp. 609-615
-
-
Whitt, D.D.1
Demoss, R.D.2
-
76
-
-
0014250997
-
In vivo dialysis of faeces as a method of stool analysis. 3. The effect of intestinal antibiotics
-
D.R. Wilson, T.S. Ing, A. Metcalfe-Gibson, and O.M. Wrong In vivo dialysis of faeces as a method of stool analysis. 3. The effect of intestinal antibiotics Clin. Sci. 34 1968 211 221
-
(1968)
Clin. Sci.
, vol.34
, pp. 211-221
-
-
Wilson, D.R.1
Ing, T.S.2
Metcalfe-Gibson, A.3
Wrong, O.M.4
-
77
-
-
77957157893
-
Gut inflammation provides a respiratory electron acceptor for Salmonella
-
S.E. Winter, P. Thiennimitr, M.G. Winter, B.P. Butler, D.L. Huseby, R.W. Crawford, J.M. Russell, C.L. Bevins, L.G. Adams, and R.M. Tsolis Gut inflammation provides a respiratory electron acceptor for Salmonella Nature 467 2010 426 429
-
(2010)
Nature
, vol.467
, pp. 426-429
-
-
Winter, S.E.1
Thiennimitr, P.2
Winter, M.G.3
Butler, B.P.4
Huseby, D.L.5
Crawford, R.W.6
Russell, J.M.7
Bevins, C.L.8
Adams, L.G.9
Tsolis, R.M.10
-
79
-
-
80053618114
-
Linking Long-Term Dietary Patterns with Gut Microbial Enterotypes
-
in press. Published online September 1, 2010
-
G.D. Wu, J. Chen, C. Hoffmann, K. Bittinger, Y.Y. Chen, S.A. Keilbaugh, M. Bewtra, D. Knights, W.A. Walters, and R. Knight Linking Long-Term Dietary Patterns with Gut Microbial Enterotypes Science 2011 in press. Published online September 1, 2010
-
(2011)
Science
-
-
Wu, G.D.1
Chen, J.2
Hoffmann, C.3
Bittinger, K.4
Chen, Y.Y.5
Keilbaugh, S.A.6
Bewtra, M.7
Knights, D.8
Walters, W.A.9
Knight, R.10
-
80
-
-
0021590858
-
The pathway of ammonia assimilation in Bacteroides fragilis
-
I. Yamamoto, A. Abe, H. Saito, and M. Ishimoto The pathway of ammonia assimilation in Bacteroides fragilis J. Gen. Appl. Microbiol. 30 1984 499 508 (Pubitemid 15078913)
-
(1984)
Journal of General and Applied Microbiology
, vol.30
, Issue.6
, pp. 499-508
-
-
Yamamoto, I.1
Abe, A.2
Saito, H.3
Ishimoto, M.4
|