메뉴 건너뛰기




Volumn 1, Issue 1, 2015, Pages 62-71

Programming a Human Commensal Bacterium, Bacteroides thetaiotaomicron, to Sense and Respond to Stimuli in the Murine Gut Microbiota

Author keywords

[No Author keywords available]

Indexed keywords

POLYPEPTIDE ANTIBIOTIC AGENT; RECOMBINASE;

EID: 84938323503     PISSN: 24054712     EISSN: 24054720     Source Type: Journal    
DOI: 10.1016/j.cels.2015.06.001     Document Type: Article
Times cited : (244)

References (52)
  • 1
    • 80051616646 scopus 로고    scopus 로고
    • Inability of Prevotella bryantii to form a functional Shine-Dalgarno interaction reflects unique evolution of ribosome binding sites in Bacteroidetes
    • T. Accetto, and G. Avguštin Inability of Prevotella bryantii to form a functional Shine-Dalgarno interaction reflects unique evolution of ribosome binding sites in Bacteroidetes PLoS ONE 6 2011 e22914
    • (2011) PLoS ONE , vol.6
    • Accetto, T.1    Avguštin, G.2
  • 2
    • 0034559920 scopus 로고    scopus 로고
    • Analysis of cepA and other Bacteroides fragilis genes reveals a unique promoter structure
    • D.P. Bayley, E.R. Rocha, and C.J. Smith Analysis of cepA and other Bacteroides fragilis genes reveals a unique promoter structure FEMS Microbiol. Lett. 193 2000 149 154
    • (2000) FEMS Microbiol. Lett. , vol.193 , pp. 149-154
    • Bayley, D.P.1    Rocha, E.R.2    Smith, C.J.3
  • 4
    • 0026062066 scopus 로고
    • Ribosome-messenger recognition: mRNA target sites for ribosomal protein S1
    • I.V. Boni, D.M. Isaeva, M.L. Musychenko, and N.V. Tzareva Ribosome-messenger recognition: mRNA target sites for ribosomal protein S1 Nucleic Acids Res. 19 1991 155 162
    • (1991) Nucleic Acids Res. , vol.19 , pp. 155-162
    • Boni, I.V.1    Isaeva, D.M.2    Musychenko, M.L.3    Tzareva, N.V.4
  • 6
    • 84899694320 scopus 로고    scopus 로고
    • Principles of genetic circuit design
    • J.A.N. Brophy, and C.A. Voigt Principles of genetic circuit design Nat. Methods 11 2014 508 520
    • (2014) Nat. Methods , vol.11 , pp. 508-520
    • Brophy, J.A.N.1    Voigt, C.A.2
  • 8
    • 84928112296 scopus 로고    scopus 로고
    • Synthetic microbes as drug delivery systems
    • J. Claesen, and M.A. Fischbach Synthetic microbes as drug delivery systems ACS Synth. Biol. 4 2015 358 364
    • (2015) ACS Synth. Biol. , vol.4 , pp. 358-364
    • Claesen, J.1    Fischbach, M.A.2
  • 9
    • 36249017917 scopus 로고    scopus 로고
    • Programming gene expression with combinatorial promoters
    • R.S. Cox 3rd, M.G. Surette, and M.B. Elowitz Programming gene expression with combinatorial promoters Mol. Syst. Biol. 3 2007 145
    • (2007) Mol. Syst. Biol. , vol.3 , pp. 145
    • Cox, R.S.1    Surette, M.G.2    Elowitz, M.B.3
  • 10
    • 0042337387 scopus 로고    scopus 로고
    • Mpi recombinase globally modulates the surface architecture of a human commensal bacterium
    • M.J. Coyne, K.G. Weinacht, C.M. Krinos, and L.E. Comstock Mpi recombinase globally modulates the surface architecture of a human commensal bacterium Proc. Natl. Acad. Sci. USA 100 2003 10446 10451
    • (2003) Proc. Natl. Acad. Sci. USA , vol.100 , pp. 10446-10451
    • Coyne, M.J.1    Weinacht, K.G.2    Krinos, C.M.3    Comstock, L.E.4
  • 12
    • 84878381909 scopus 로고    scopus 로고
    • Synthetic analog computation in living cells
    • R. Daniel, J.R. Rubens, R. Sarpeshkar, and T.K. Lu Synthetic analog computation in living cells Nature 497 2013 619 623
    • (2013) Nature , vol.497 , pp. 619-623
    • Daniel, R.1    Rubens, J.R.2    Sarpeshkar, R.3    Lu, T.K.4
  • 14
    • 84910594404 scopus 로고    scopus 로고
    • Genomically encoded analog memory with precise in vivo DNA writing in living cell populations
    • F. Farzadfard, and T.K. Lu Genomically encoded analog memory with precise in vivo DNA writing in living cell populations Science 346 2014 1256272
    • (2014) Science , vol.346 , pp. 1256272
    • Farzadfard, F.1    Lu, T.K.2
  • 16
    • 0030922269 scopus 로고    scopus 로고
    • The role of insulator elements in defining domains of gene expression
    • P.K. Geyer The role of insulator elements in defining domains of gene expression Curr. Opin. Genet. Dev. 7 1997 242 248
    • (1997) Curr. Opin. Genet. Dev. , vol.7 , pp. 242-248
    • Geyer, P.K.1
  • 17
    • 84877246037 scopus 로고    scopus 로고
    • Complete sequence of pBFUK1, a carbapenemase-harboring mobilizable plasmid from Bacteroides fragilis, and distribution of pBFUK1-like plasmids among carbapenem-resistant B. fragilis clinical isolates
    • T. Goto, K. Tanaka, C. Minh Tran, and K. Watanabe Complete sequence of pBFUK1, a carbapenemase-harboring mobilizable plasmid from Bacteroides fragilis, and distribution of pBFUK1-like plasmids among carbapenem-resistant B. fragilis clinical isolates J. Antibiot. 66 2013 239 242
    • (2013) J. Antibiot. , vol.66 , pp. 239-242
    • Goto, T.1    Tanaka, K.2    Minh Tran, C.3    Watanabe, K.4
  • 19
    • 55549088221 scopus 로고    scopus 로고
    • Identification and use of the putative Bacteroides ovatus xylanase promoter for the inducible production of recombinant human proteins
    • Z.Z.R. Hamady, M.D. Farrar, T.R. Whitehead, K.T. Holland, J.P.A. Lodge, and S.R. Carding Identification and use of the putative Bacteroides ovatus xylanase promoter for the inducible production of recombinant human proteins Microbiology 154 2008 3165 3174
    • (2008) Microbiology , vol.154 , pp. 3165-3174
    • Hamady, Z.Z.R.1    Farrar, M.D.2    Whitehead, T.R.3    Holland, K.T.4    Lodge, J.P.A.5    Carding, S.R.6
  • 20
    • 0031965086 scopus 로고    scopus 로고
    • The sequence of spacers between the consensus sequences modulates the strength of prokaryotic promoters
    • P.R. Jensen, and K. Hammer The sequence of spacers between the consensus sequences modulates the strength of prokaryotic promoters Appl. Environ. Microbiol. 64 1998 82 87
    • (1998) Appl. Environ. Microbiol. , vol.64 , pp. 82-87
    • Jensen, P.R.1    Hammer, K.2
  • 21
    • 0030721749 scopus 로고    scopus 로고
    • Controlled gene expression systems for lactic acid bacteria: transferable nisin-inducible expression cassettes for Lactococcus, Leuconostoc, and Lactobacillus spp
    • M. Kleerebezem, M.M. Beerthuyzen, E.E. Vaughan, W.M. de Vos, and O.P. Kuipers Controlled gene expression systems for lactic acid bacteria: transferable nisin-inducible expression cassettes for Lactococcus, Leuconostoc, and Lactobacillus spp Appl. Environ. Microbiol. 63 1997 4581 4584
    • (1997) Appl. Environ. Microbiol. , vol.63 , pp. 4581-4584
    • Kleerebezem, M.1    Beerthuyzen, M.M.2    Vaughan, E.E.3    De Vos, W.M.4    Kuipers, O.P.5
  • 24
    • 84920278608 scopus 로고    scopus 로고
    • Advances and current limitations in transcript-level control of gene expression
    • J.M. Leavitt, and H.S. Alper Advances and current limitations in transcript-level control of gene expression Curr. Opin. Biotechnol. 34C 2015 98 104
    • (2015) Curr. Opin. Biotechnol. , vol.34 C , pp. 98-104
    • Leavitt, J.M.1    Alper, H.S.2
  • 25
    • 84884411052 scopus 로고    scopus 로고
    • Bacterial colonization factors control specificity and stability of the gut microbiota
    • S.M. Lee, G.P. Donaldson, Z. Mikulski, S. Boyajian, K. Ley, and S.K. Mazmanian Bacterial colonization factors control specificity and stability of the gut microbiota Nature 501 2013 426 429
    • (2013) Nature , vol.501 , pp. 426-429
    • Lee, S.M.1    Donaldson, G.P.2    Mikulski, Z.3    Boyajian, S.4    Ley, K.5    Mazmanian, S.K.6
  • 28
    • 84884856342 scopus 로고    scopus 로고
    • Cas9 as a versatile tool for engineering biology
    • P. Mali, K.M. Esvelt, and G.M. Church Cas9 as a versatile tool for engineering biology Nat. Methods 10 2013 957 963
    • (2013) Nat. Methods , vol.10 , pp. 957-963
    • Mali, P.1    Esvelt, K.M.2    Church, G.M.3
  • 29
    • 55249108031 scopus 로고    scopus 로고
    • Mucosal glycan foraging enhances fitness and transmission of a saccharolytic human gut bacterial symbiont
    • E.C. Martens, H.C. Chiang, and J.I. Gordon Mucosal glycan foraging enhances fitness and transmission of a saccharolytic human gut bacterial symbiont Cell Host Microbe 4 2008 447 457
    • (2008) Cell Host Microbe , vol.4 , pp. 447-457
    • Martens, E.C.1    Chiang, H.C.2    Gordon, J.I.3
  • 33
    • 84934936070 scopus 로고    scopus 로고
    • Multi-input CRISPR/Cas genetic circuits that interface host regulatory networks
    • A.A.K. Nielsen, and C.A. Voigt Multi-input CRISPR/Cas genetic circuits that interface host regulatory networks Mol. Syst. Biol. 10 2014 763
    • (2014) Mol. Syst. Biol. , vol.10 , pp. 763
    • Nielsen, A.A.K.1    Voigt, C.A.2
  • 34
    • 84890178034 scopus 로고    scopus 로고
    • Advances in genetic circuit design: novel biochemistries, deep part mining, and precision gene expression
    • A.A.K. Nielsen, T.H. Segall-Shapiro, and C.A. Voigt Advances in genetic circuit design: novel biochemistries, deep part mining, and precision gene expression Curr. Opin. Chem. Biol. 17 2013 878 892
    • (2013) Curr. Opin. Chem. Biol. , vol.17 , pp. 878-892
    • Nielsen, A.A.K.1    Segall-Shapiro, T.H.2    Voigt, C.A.3
  • 35
    • 0027258296 scopus 로고
    • Genetic and biochemical analysis of a novel Ambler class A beta-lactamase responsible for cefoxitin resistance in Bacteroides species
    • A.C. Parker, and C.J. Smith Genetic and biochemical analysis of a novel Ambler class A beta-lactamase responsible for cefoxitin resistance in Bacteroides species Antimicrob. Agents Chemother. 37 1993 1028 1036
    • (1993) Antimicrob. Agents Chemother. , vol.37 , pp. 1028-1036
    • Parker, A.C.1    Smith, C.J.2
  • 36
    • 84862987256 scopus 로고    scopus 로고
    • Development of an IPTG inducible expression vector adapted for Bacteroides fragilis
    • A.C. Parker, and C.J. Smith Development of an IPTG inducible expression vector adapted for Bacteroides fragilis Plasmid 68 2012 86 92
    • (2012) Plasmid , vol.68 , pp. 86-92
    • Parker, A.C.1    Smith, C.J.2
  • 37
    • 56949093168 scopus 로고    scopus 로고
    • Rhamnose catabolism in Bacteroides thetaiotaomicron is controlled by the positive transcriptional regulator RhaR
    • E.H. Patel, L.V. Paul, S. Patrick, and V.R. Abratt Rhamnose catabolism in Bacteroides thetaiotaomicron is controlled by the positive transcriptional regulator RhaR Res. Microbiol. 159 2008 678 684
    • (2008) Res. Microbiol. , vol.159 , pp. 678-684
    • Patel, E.H.1    Paul, L.V.2    Patrick, S.3    Abratt, V.R.4
  • 38
    • 84874687019 scopus 로고    scopus 로고
    • Repurposing CRISPR as an RNA-guided platform for sequence-specific control of gene expression
    • L.S. Qi, M.H. Larson, L.A. Gilbert, J.A. Doudna, J.S. Weissman, A.P. Arkin, and W.A. Lim Repurposing CRISPR as an RNA-guided platform for sequence-specific control of gene expression Cell 152 2013 1173 1183
    • (2013) Cell , vol.152 , pp. 1173-1183
    • Qi, L.S.1    Larson, M.H.2    Gilbert, L.A.3    Doudna, J.A.4    Weissman, J.S.5    Arkin, A.P.6    Lim, W.A.7
  • 39
    • 0028176653 scopus 로고
    • Insertional activation of cepA leads to high-level β-lactamase expression in Bacteroides fragilis clinical isolates
    • M.B. Rogers, T.K. Bennett, C.M. Payne, and C.J. Smith Insertional activation of cepA leads to high-level β-lactamase expression in Bacteroides fragilis clinical isolates J. Bacteriol. 176 1994 4376 4384
    • (1994) J. Bacteriol. , vol.176 , pp. 4376-4384
    • Rogers, M.B.1    Bennett, T.K.2    Payne, C.M.3    Smith, C.J.4
  • 40
    • 84877591968 scopus 로고    scopus 로고
    • Live-attenuated Listeria-based immunotherapy
    • J. Rothman, and Y. Paterson Live-attenuated Listeria-based immunotherapy Expert Rev. Vaccines 12 2013 493 504
    • (2013) Expert Rev. Vaccines , vol.12 , pp. 493-504
    • Rothman, J.1    Paterson, Y.2
  • 41
    • 70349964350 scopus 로고    scopus 로고
    • Automated design of synthetic ribosome binding sites to control protein expression
    • H.M. Salis, E.A. Mirsky, and C.A. Voigt Automated design of synthetic ribosome binding sites to control protein expression Nat. Biotechnol. 27 2009 946 950
    • (2009) Nat. Biotechnol. , vol.27 , pp. 946-950
    • Salis, H.M.1    Mirsky, E.A.2    Voigt, C.A.3
  • 42
    • 0021156930 scopus 로고
    • Bacteroides of the human lower intestinal tract
    • A.A. Salyers Bacteroides of the human lower intestinal tract Annu. Rev. Microbiol. 38 1984 293 313
    • (1984) Annu. Rev. Microbiol. , vol.38 , pp. 293-313
    • Salyers, A.A.1
  • 43
    • 84875230351 scopus 로고    scopus 로고
    • Synthetic circuits integrating logic and memory in living cells
    • P. Siuti, J. Yazbek, and T.K. Lu Synthetic circuits integrating logic and memory in living cells Nat. Biotechnol. 31 2013 448 452
    • (2013) Nat. Biotechnol. , vol.31 , pp. 448-452
    • Siuti, P.1    Yazbek, J.2    Lu, T.K.3
  • 44
    • 0026588633 scopus 로고
    • Heterologous gene expression in Bacteroides fragilis
    • C.J. Smith, M.B. Rogers, and M.L. McKee Heterologous gene expression in Bacteroides fragilis Plasmid 27 1992 141 154
    • (1992) Plasmid , vol.27 , pp. 141-154
    • Smith, C.J.1    Rogers, M.B.2    McKee, M.L.3
  • 45
    • 33745043692 scopus 로고    scopus 로고
    • A hybrid two-component system protein of a prominent human gut symbiont couples glycan sensing in vivo to carbohydrate metabolism
    • E.D. Sonnenburg, J.L. Sonnenburg, J.K. Manchester, E.E. Hansen, H.C. Chiang, and J.I. Gordon A hybrid two-component system protein of a prominent human gut symbiont couples glycan sensing in vivo to carbohydrate metabolism Proc. Natl. Acad. Sci. USA 103 2006 8834 8839
    • (2006) Proc. Natl. Acad. Sci. USA , vol.103 , pp. 8834-8839
    • Sonnenburg, E.D.1    Sonnenburg, J.L.2    Manchester, J.K.3    Hansen, E.E.4    Chiang, H.C.5    Gordon, J.I.6
  • 46
    • 77953901767 scopus 로고    scopus 로고
    • Specificity of polysaccharide use in intestinal bacteroides species determines diet-induced microbiota alterations
    • E.D. Sonnenburg, H. Zheng, P. Joglekar, S.K. Higginbottom, S.J. Firbank, D.N. Bolam, and J.L. Sonnenburg Specificity of polysaccharide use in intestinal bacteroides species determines diet-induced microbiota alterations Cell 141 2010 1241 1252
    • (2010) Cell , vol.141 , pp. 1241-1252
    • Sonnenburg, E.D.1    Zheng, H.2    Joglekar, P.3    Higginbottom, S.K.4    Firbank, S.J.5    Bolam, D.N.6    Sonnenburg, J.L.7
  • 48
    • 84862276328 scopus 로고    scopus 로고
    • Structure, function and diversity of the healthy human microbiome
    • Human Microbiome Project Consortium Structure, function and diversity of the healthy human microbiome Nature 486 2012 207 214
    • (2012) Nature , vol.486 , pp. 207-214
  • 50
    • 0034089446 scopus 로고    scopus 로고
    • Characterization of a Bacteroides mobilizable transposon, NBU2, which carries a functional lincomycin resistance gene
    • J. Wang, N.B. Shoemaker, G.-R. Wang, and A.A. Salyers Characterization of a Bacteroides mobilizable transposon, NBU2, which carries a functional lincomycin resistance gene J. Bacteriol. 182 2000 3559 3571
    • (2000) J. Bacteriol. , vol.182 , pp. 3559-3571
    • Wang, J.1    Shoemaker, N.B.2    Wang, G.-R.3    Salyers, A.A.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.