메뉴 건너뛰기




Volumn 27, Issue , 2015, Pages 127-132

Advancing gut microbiome research using cultivation

Author keywords

[No Author keywords available]

Indexed keywords

ANTIBIOTIC AGENT; DIGOXIN; DNA 16S; PROBIOTIC AGENT; XENOBIOTIC AGENT;

EID: 84942108460     PISSN: 13695274     EISSN: 18790364     Source Type: Journal    
DOI: 10.1016/j.mib.2015.08.004     Document Type: Review
Times cited : (40)

References (37)
  • 1
    • 10344227692 scopus 로고    scopus 로고
    • Metagenomics: application of genomics to uncultured microorganisms
    • Handelsman J. Metagenomics: application of genomics to uncultured microorganisms. Microbiol Mol Biol Rev 2004, 68:669-685.
    • (2004) Microbiol Mol Biol Rev , vol.68 , pp. 669-685
    • Handelsman, J.1
  • 2
    • 84858439578 scopus 로고    scopus 로고
    • The human microbiome: at the interface of health and disease
    • Cho I., Blaser M.J. The human microbiome: at the interface of health and disease. Nat Rev Genet 2012, 13:260-270.
    • (2012) Nat Rev Genet , vol.13 , pp. 260-270
    • Cho, I.1    Blaser, M.J.2
  • 4
    • 84866168894 scopus 로고    scopus 로고
    • Functional interactions between the gut microbiota and host metabolism
    • Tremaroli V., Bäckhed F. Functional interactions between the gut microbiota and host metabolism. Nature 2012, 489:242-249.
    • (2012) Nature , vol.489 , pp. 242-249
    • Tremaroli, V.1    Bäckhed, F.2
  • 6
    • 33845874101 scopus 로고    scopus 로고
    • An obesity-associated gut microbiome with increased capacity for energy harvest
    • Turnbaugh P.J., Ley R.E., Mahowald M.A., Magrini V., Mardis E.R., Gordon J.I. An obesity-associated gut microbiome with increased capacity for energy harvest. Nature 2006, 444:1027-1131.
    • (2006) Nature , vol.444 , pp. 1027-1131
    • Turnbaugh, P.J.1    Ley, R.E.2    Mahowald, M.A.3    Magrini, V.4    Mardis, E.R.5    Gordon, J.I.6
  • 9
    • 84884503949 scopus 로고    scopus 로고
    • Experimental approaches for defining functional roles of microbes in the human gut
    • Dantas G., Sommer M.O.A., Degnan P.H., Goodman A.L. Experimental approaches for defining functional roles of microbes in the human gut. Annu Rev Microbiol 2013, 67:459-475.
    • (2013) Annu Rev Microbiol , vol.67 , pp. 459-475
    • Dantas, G.1    Sommer, M.O.A.2    Degnan, P.H.3    Goodman, A.L.4
  • 10
  • 12
    • 84907323900 scopus 로고    scopus 로고
    • Cultivation-based multiplex phenotyping of human gut microbiota allows targeted recovery of previously uncultured bacteria
    • Rettedal E.A., Gumpert H., Sommer M.O.A. Cultivation-based multiplex phenotyping of human gut microbiota allows targeted recovery of previously uncultured bacteria. Nat Commun 2014, 5:1-9.
    • (2014) Nat Commun , vol.5 , pp. 1-9
    • Rettedal, E.A.1    Gumpert, H.2    Sommer, M.O.A.3
  • 14
    • 84903977458 scopus 로고    scopus 로고
    • Gene-targeted microfluidic cultivation validated by isolation of a gut bacterium listed in Human Microbiome Project's Most Wanted taxa
    • Ma L., Kim J., Hatzenpichler R., Karymov M.A., Hubert N., Hanan I.M., Chang E.B., Ismagilov R.F. Gene-targeted microfluidic cultivation validated by isolation of a gut bacterium listed in Human Microbiome Project's Most Wanted taxa. Proc Natl Acad Sci U S A 2014, 111:9768-9773.
    • (2014) Proc Natl Acad Sci U S A , vol.111 , pp. 9768-9773
    • Ma, L.1    Kim, J.2    Hatzenpichler, R.3    Karymov, M.A.4    Hubert, N.5    Hanan, I.M.6    Chang, E.B.7    Ismagilov, R.F.8
  • 15
    • 0037052320 scopus 로고    scopus 로고
    • Isolating "uncultivable" microorganisms in pure culture in a simulated natural environment
    • Kaeberlein T., Lewis K., Epstein S.S. Isolating "uncultivable" microorganisms in pure culture in a simulated natural environment. Science 2002, 296:1127-1129.
    • (2002) Science , vol.296 , pp. 1127-1129
    • Kaeberlein, T.1    Lewis, K.2    Epstein, S.S.3
  • 17
    • 0017151301 scopus 로고
    • Medium for use in antibiotic susceptibility testing of anaerobic bacteria
    • Wilkins T.D., Chalgren S. Medium for use in antibiotic susceptibility testing of anaerobic bacteria. Antimicrob Agents Chemother 1976, 10:926-928.
    • (1976) Antimicrob Agents Chemother , vol.10 , pp. 926-928
    • Wilkins, T.D.1    Chalgren, S.2
  • 18
    • 0032755259 scopus 로고    scopus 로고
    • Direct analysis of genes encoding 16S rRNA from complex communities reveals many novel molecular species within the human gut
    • Suau A., Bonnet R., Sutren M., Godon J.J., Gibson G.R., Collins M.D., Dore J. Direct analysis of genes encoding 16S rRNA from complex communities reveals many novel molecular species within the human gut. Appl Environ Microbiol 1999, 65:4799-4807.
    • (1999) Appl Environ Microbiol , vol.65 , pp. 4799-4807
    • Suau, A.1    Bonnet, R.2    Sutren, M.3    Godon, J.J.4    Gibson, G.R.5    Collins, M.D.6    Dore, J.7
  • 19
    • 0029900986 scopus 로고    scopus 로고
    • Human colonic biota studied by ribosomal DNA sequence analysis
    • Wilson K.H., Blitchington R.B. Human colonic biota studied by ribosomal DNA sequence analysis. Appl Environ Microbiol 1996, 62:2273-2278.
    • (1996) Appl Environ Microbiol , vol.62 , pp. 2273-2278
    • Wilson, K.H.1    Blitchington, R.B.2
  • 20
    • 0036024611 scopus 로고    scopus 로고
    • Phylogenetic analysis of the human gut microbiota using 16S rDNA clone libraries and strictly anaerobic culture-based methods
    • Hayashi H., Sakamoto M., Benno Y. Phylogenetic analysis of the human gut microbiota using 16S rDNA clone libraries and strictly anaerobic culture-based methods. Microbiol Immunol 2002, 46:535-548.
    • (2002) Microbiol Immunol , vol.46 , pp. 535-548
    • Hayashi, H.1    Sakamoto, M.2    Benno, Y.3
  • 21
  • 23
    • 84907485876 scopus 로고    scopus 로고
    • Eukaryote culturomics of the gut reveals new species
    • Gouba N., Raoult D., Drancourt M. Eukaryote culturomics of the gut reveals new species. PLoS ONE 2014, 9. e106994-5.
    • (2014) PLoS ONE , vol.9
    • Gouba, N.1    Raoult, D.2    Drancourt, M.3
  • 24
    • 84920943976 scopus 로고    scopus 로고
    • The rebirth of culture in microbiology through the example of culturomics to study human gut microbiota
    • Lagier J.C., Hugon P., Khelaifia S., Fournier P.-E., La Scola B., Raoult D. The rebirth of culture in microbiology through the example of culturomics to study human gut microbiota. Clin Microbiol Rev 2015, 28:237-264.
    • (2015) Clin Microbiol Rev , vol.28 , pp. 237-264
    • Lagier, J.C.1    Hugon, P.2    Khelaifia, S.3    Fournier, P.-E.4    La Scola, B.5    Raoult, D.6
  • 26
    • 0020527551 scopus 로고
    • Digoxin-inactivating bacteria: identification in human gut flora
    • Saha J.R., Butler V.P., Neu H.C., Lindenbaum J. Digoxin-inactivating bacteria: identification in human gut flora. Science 1983, 220:325-327.
    • (1983) Science , vol.220 , pp. 325-327
    • Saha, J.R.1    Butler, V.P.2    Neu, H.C.3    Lindenbaum, J.4
  • 27
    • 84880439384 scopus 로고    scopus 로고
    • Predicting and manipulating cardiac drug inactivation by the human gut bacterium Eggerthella lenta
    • Haiser H.J., Gootenberg D.B., Chatman K., Sirasani G., Balskus E.P., Turnbaugh P.J. Predicting and manipulating cardiac drug inactivation by the human gut bacterium Eggerthella lenta. Science 2013, 341:295-298.
    • (2013) Science , vol.341 , pp. 295-298
    • Haiser, H.J.1    Gootenberg, D.B.2    Chatman, K.3    Sirasani, G.4    Balskus, E.P.5    Turnbaugh, P.J.6
  • 28
    • 84923654518 scopus 로고    scopus 로고
    • Antibiotics in early life and obesity
    • Cox L.M., Blaser M.J. Antibiotics in early life and obesity. Nat Rev Endocrinol 2015, 11:182-190.
    • (2015) Nat Rev Endocrinol , vol.11 , pp. 182-190
    • Cox, L.M.1    Blaser, M.J.2
  • 30
    • 77950251400 scopus 로고    scopus 로고
    • A human gut microbial gene catalogue established by metagenomic sequencing
    • Additional members M.C. A human gut microbial gene catalogue established by metagenomic sequencing. Nature 2010, 464:59-65.
    • (2010) Nature , vol.464 , pp. 59-65
    • Additional members, M.C.1
  • 36
    • 80055055710 scopus 로고    scopus 로고
    • Structure and evolution of streptomyces interaction networks in soil and in silico
    • Vetsigian K., Jajoo R., Kishony R. Structure and evolution of streptomyces interaction networks in soil and in silico. PLoS Biol 2011, 9. e1001184-12.
    • (2011) PLoS Biol , vol.9
    • Vetsigian, K.1    Jajoo, R.2    Kishony, R.3
  • 37
    • 84862207235 scopus 로고    scopus 로고
    • Human gut-on-a-chip inhabited by microbial flora that experiences intestinal peristalsis-like motions and flow
    • Kim H.J., Huh D., Hamilton G., Ingber D.E. Human gut-on-a-chip inhabited by microbial flora that experiences intestinal peristalsis-like motions and flow. Lab Chip 2012, 12:2165-2210.
    • (2012) Lab Chip , vol.12 , pp. 2165-2210
    • Kim, H.J.1    Huh, D.2    Hamilton, G.3    Ingber, D.E.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.