메뉴 건너뛰기




Volumn 110, Issue 2, 2013, Pages

Intramolecular arrangement of sensor and regulator overcomes relaxed specificity in hybrid two-component systems

Author keywords

Co evolution; Phosphorylation; Protein interactions

Indexed keywords

PROTEIN; PROTEIN KINASE; RESPONSE REGULATOR PROTEIN; SENSOR KINASE; UNCLASSIFIED DRUG;

EID: 84872177104     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.1212102110     Document Type: Article
Times cited : (27)

References (48)
  • 1
    • 22244450719 scopus 로고    scopus 로고
    • Protein families and their evolution - A structural perspective
    • Orengo CA, Thornton JM (2005) Protein families and their evolution-a structural perspective. Annu Rev Biochem 74:867-900.
    • (2005) Annu Rev Biochem , vol.74 , pp. 867-900
    • Orengo, C.A.1    Thornton, J.M.2
  • 2
    • 21844434913 scopus 로고    scopus 로고
    • Evolutionary origins of genomic repertoires in bacteria
    • Lerat E, Daubin V, Ochman H, Moran NA (2005) Evolutionary origins of genomic repertoires in bacteria. PLoS Biol 3(5):e130.
    • (2005) PLoS Biol , vol.3 , Issue.5
    • Lerat, E.1    Daubin, V.2    Ochman, H.3    Moran, N.A.4
  • 3
    • 44449112421 scopus 로고    scopus 로고
    • Specificity in two-component signal transduction pathways
    • Laub MT, Goulian M (2007) Specificity in two-component signal transduction pathways. Annu Rev Genet 41:121-145.
    • (2007) Annu Rev Genet , vol.41 , pp. 121-145
    • Laub, M.T.1    Goulian, M.2
  • 4
    • 84863622633 scopus 로고    scopus 로고
    • Adaptive mutations that prevent crosstalk enable the expansion of paralogous signaling protein families
    • Capra EJ, Perchuk BS, Skerker JM, Laub MT (2012) Adaptive mutations that prevent crosstalk enable the expansion of paralogous signaling protein families. Cell 150(1):222-232.
    • (2012) Cell , vol.150 , Issue.1 , pp. 222-232
    • Capra, E.J.1    Perchuk, B.S.2    Skerker, J.M.3    Laub, M.T.4
  • 5
    • 34250901960 scopus 로고    scopus 로고
    • Phosphotransfer profiling: Systematic mapping of two-component signal transduction pathways and phosphorelays
    • Laub MT, Biondi EG, Skerker JM (2007) Phosphotransfer profiling: Systematic mapping of two-component signal transduction pathways and phosphorelays. Methods Enzymol 423:531-548.
    • (2007) Methods Enzymol , vol.423 , pp. 531-548
    • Laub, M.T.1    Biondi, E.G.2    Skerker, J.M.3
  • 6
    • 44649153450 scopus 로고    scopus 로고
    • Rewiring the specifi city of two-component signal transduction systems
    • Skerker JM, et al. (2008) Rewiring the specifi city of two-component signal transduction systems. Cell 133(6):1043-1054.
    • (2008) Cell , vol.133 , Issue.6 , pp. 1043-1054
    • Skerker, J.M.1
  • 7
    • 77953901767 scopus 로고    scopus 로고
    • Specificity of polysaccharide use in intestinal bacteroides species determines diet-induced microbiota alterations
    • Sonnenburg ED, et al. (2010) Specificity of polysaccharide use in intestinal bacteroides species determines diet-induced microbiota alterations. Cell 141(7):1241-1252.
    • (2010) Cell , vol.141 , Issue.7 , pp. 1241-1252
    • Sonnenburg, E.D.1
  • 8
    • 33745043692 scopus 로고    scopus 로고
    • A hybrid two-component system protein of a prominent human gut symbiont couples glycan sensing in vivo to carbohydrate metabolism
    • Sonnenburg ED, et al. (2006) A hybrid two-component system protein of a prominent human gut symbiont couples glycan sensing in vivo to carbohydrate metabolism. Proc Natl Acad Sci USA 103(23):8834-8839.
    • (2006) Proc Natl Acad Sci USA , vol.103 , Issue.23 , pp. 8834-8839
    • Sonnenburg, E.D.1
  • 10
    • 26444481955 scopus 로고    scopus 로고
    • Two-component signal transduction pathways regulating growth and cell cycle progression in a bacterium: A system-level analysis
    • Skerker JM, Prasol MS, Perchuk BS, Biondi EG, Laub MT (2005) Two-component signal transduction pathways regulating growth and cell cycle progression in a bacterium: A system-level analysis. PLoS Biol 3(10):e334.
    • (2005) PLoS Biol , vol.3 , Issue.10
    • Skerker, J.M.1    Prasol, M.S.2    Perchuk, B.S.3    Biondi, E.G.4    Laub, M.T.5
  • 11
    • 78649704332 scopus 로고    scopus 로고
    • Systematic dissection and trajectory-scanning mutagenesis of the molecular interface that ensures specificity of two-component signaling pathways
    • Capra EJ, et al. (2010) Systematic dissection and trajectory-scanning mutagenesis of the molecular interface that ensures specificity of two-component signaling pathways. PLoS Genet 6(11):e1001220.
    • (2010) PLoS Genet , vol.6 , Issue.11
    • Capra, E.J.1
  • 12
    • 0037470975 scopus 로고    scopus 로고
    • A genomic view of the human-Bacteroides thetaiotaomicron symbiosis
    • Xu J, et al. (2003) A genomic view of the human-Bacteroides thetaiotaomicron symbiosis. Science 299(5615):2074-2076.
    • (2003) Science , vol.299 , Issue.5615 , pp. 2074-2076
    • Xu, J.1
  • 13
    • 58549114185 scopus 로고    scopus 로고
    • Identification of direct residue contacts in protein-protein interaction by message passing
    • Weigt M, White RA, Szurmant H, Hoch JA, Hwa T (2009) Identification of direct residue contacts in protein-protein interaction by message passing. Proc Natl Acad Sci USA 106(1):67-72.
    • (2009) Proc Natl Acad Sci USA , vol.106 , Issue.1 , pp. 67-72
    • Weigt, M.1    White, R.A.2    Szurmant, H.3    Hoch, J.A.4    Hwa, T.5
  • 14
    • 77949913363 scopus 로고    scopus 로고
    • Computational modeling of phosphotransfer complexes in twocomponent signaling
    • Schug A, et al. (2010) Computational modeling of phosphotransfer complexes in twocomponent signaling. Methods Enzymol 471:43-58.
    • (2010) Methods Enzymol , vol.471 , pp. 43-58
    • Schug, A.1
  • 15
    • 70349795241 scopus 로고    scopus 로고
    • Structural insight into partner specificity and phosphoryl transfer in two-component signal transduction
    • Casino P, Rubio V, Marina A (2009) Structural insight into partner specificity and phosphoryl transfer in two-component signal transduction. Cell 139(2):325-336.
    • (2009) Cell , vol.139 , Issue.2 , pp. 325-336
    • Casino, P.1    Rubio, V.2    Marina, A.3
  • 16
    • 83755178457 scopus 로고    scopus 로고
    • Direct-coupling analysis of residue coevolution captures native contacts across many protein families
    • Morcos F, et al. (2011) Direct-coupling analysis of residue coevolution captures native contacts across many protein families. Proc Natl Acad Sci USA 108(49):E1293-E1301.
    • (2011) Proc Natl Acad Sci USA , vol.108 , Issue.49
    • Morcos, F.1
  • 17
    • 80053302096 scopus 로고    scopus 로고
    • Determinants of homodimerization specificity in histidine kinases
    • Ashenberg O, Rozen-Gagnon K, Laub MT, Keating AE (2011) Determinants of homodimerization specificity in histidine kinases. J Mol Biol 413(1):222-235.
    • (2011) J Mol Biol , vol.413 , Issue.1 , pp. 222-235
    • Ashenberg, O.1    Rozen-Gagnon, K.2    Laub, M.T.3    Keating, A.E.4
  • 18
    • 84860810089 scopus 로고    scopus 로고
    • A scissor blade-like closing mechanism implicated in transmembrane signaling in a Bacteroides hybrid two-component system
    • Lowe EC, Baslé A, Czjzek M, Firbank SJ, Bolam DN (2012) A scissor blade-like closing mechanism implicated in transmembrane signaling in a Bacteroides hybrid two-component system. Proc Natl Acad Sci USA 109(19):7298-7303.
    • (2012) Proc Natl Acad Sci USA , vol.109 , Issue.19 , pp. 7298-7303
    • Lowe, E.C.1    Baslé, A.2    Czjzek, M.3    Firbank, S.J.4    Bolam, D.N.5
  • 19
    • 72049103409 scopus 로고    scopus 로고
    • Use of a semisynthetic epitope to probe histidine kinase activity and regulation
    • Carlson HK, et al. (2010) Use of a semisynthetic epitope to probe histidine kinase activity and regulation. Anal Biochem 397(2):139-143.
    • (2010) Anal Biochem , vol.397 , Issue.2 , pp. 139-143
    • Carlson, H.K.1
  • 20
    • 0035910008 scopus 로고    scopus 로고
    • PAS-A domain of phosphorelay sensor kinase A: A catalytic ATP-binding domain involved in the initiation of development in Bacillus subtilis
    • Stephenson K, Hoch JA (2001) PAS-A domain of phosphorelay sensor kinase A: A catalytic ATP-binding domain involved in the initiation of development in Bacillus subtilis. Proc Natl Acad Sci USA 98(26):15251-15256.
    • (2001) Proc Natl Acad Sci USA , vol.98 , Issue.26 , pp. 15251-15256
    • Stephenson, K.1    Hoch, J.A.2
  • 21
    • 0025964291 scopus 로고
    • Initiation of sporulation in B. subtilis is controlled by a multicomponent phosphorelay
    • Burbulys D, Trach KA, Hoch JA (1991) Initiation of sporulation in B. subtilis is controlled by a multicomponent phosphorelay. Cell 64(3):545-552.
    • (1991) Cell , vol.64 , Issue.3 , pp. 545-552
    • Burbulys, D.1    Trach, K.A.2    Hoch, J.A.3
  • 22
    • 1842454278 scopus 로고    scopus 로고
    • PhoP can activate its target genes in a PhoQ-independent manner
    • Lejona S, et al. (2004) PhoP can activate its target genes in a PhoQ-independent manner. J Bacteriol 186(8):2476-2480.
    • (2004) J Bacteriol , vol.186 , Issue.8 , pp. 2476-2480
    • Lejona, S.1
  • 23
    • 14244270197 scopus 로고    scopus 로고
    • Signal-dependent binding of the response regulators PhoP and PmrA to their target promoters in vivo
    • Shin D, Groisman EA (2005) Signal-dependent binding of the response regulators PhoP and PmrA to their target promoters in vivo. J Biol Chem 280(6):4089-4094.
    • (2005) J Biol Chem , vol.280 , Issue.6 , pp. 4089-4094
    • Shin, D.1    Groisman, E.A.2
  • 24
    • 84855173898 scopus 로고    scopus 로고
    • Recognition and degradation of plant cell wall polysaccharides by two human gut symbionts
    • Martens EC, et al. (2011) Recognition and degradation of plant cell wall polysaccharides by two human gut symbionts. PLoS Biol 9(12):e1001221.
    • (2011) PLoS Biol , vol.9 , Issue.12
    • Martens, E.C.1
  • 25
    • 0842346438 scopus 로고    scopus 로고
    • Specificity in signal transduction: From phosphotyrosine-SH2 domain interactions to complex cellular systems
    • Pawson T (2004) Specificity in signal transduction: From phosphotyrosine-SH2 domain interactions to complex cellular systems. Cell 116(2):191-203.
    • (2004) Cell , vol.116 , Issue.2 , pp. 191-203
    • Pawson, T.1
  • 26
    • 33747066132 scopus 로고    scopus 로고
    • Rabs and their effectors: Achieving specificity in membrane traffi c
    • Grosshans BL, Ortiz D, Novick P (2006) Rabs and their effectors: Achieving specificity in membrane traffi c. Proc Natl Acad Sci USA 103(32):11821-11827.
    • (2006) Proc Natl Acad Sci USA , vol.103 , Issue.32 , pp. 11821-11827
    • Grosshans, B.L.1    Ortiz, D.2    Novick, P.3
  • 27
    • 79955770162 scopus 로고    scopus 로고
    • Scaffold proteins: Hubs for controlling the flow of cellular information
    • Good MC, Zalatan JG, Lim WA (2011) Scaffold proteins: Hubs for controlling the flow of cellular information. Science 332(6030):680-686.
    • (2011) Science , vol.332 , Issue.6030 , pp. 680-686
    • Good, M.C.1    Zalatan, J.G.2    Lim, W.A.3
  • 28
    • 79959938207 scopus 로고    scopus 로고
    • Recruitment interactions can override catalytic interactions in determining the functional identity of a protein kinase
    • Won AP, Garbarino JE, Lim WA (2011) Recruitment interactions can override catalytic interactions in determining the functional identity of a protein kinase. Proc Natl Acad Sci USA 108(24):9809-9814.
    • (2011) Proc Natl Acad Sci USA , vol.108 , Issue.24 , pp. 9809-9814
    • Won, A.P.1    Garbarino, J.E.2    Lim, W.A.3
  • 29
    • 78650643942 scopus 로고    scopus 로고
    • Evolving a robust signal transduction pathway from weak cross-talk
    • Siryaporn A, Perchuk BS, Laub MT, Goulian M (2010) Evolving a robust signal transduction pathway from weak cross-talk. Mol Syst Biol 6:452.
    • (2010) Mol Syst Biol , vol.6 , pp. 452
    • Siryaporn, A.1    Perchuk, B.S.2    Laub, M.T.3    Goulian, M.4
  • 30
    • 79952435349 scopus 로고    scopus 로고
    • Activation and function of the MAPKs and their substrates, the MAPK-activated protein kinases
    • Cargnello M, Roux PP (2011) Activation and function of the MAPKs and their substrates, the MAPK-activated protein kinases. Microbiol Mol Biol Rev 75(1):50-83.
    • (2011) Microbiol Mol Biol Rev , vol.75 , Issue.1 , pp. 50-83
    • Cargnello, M.1    Roux, P.P.2
  • 31
    • 77958592563 scopus 로고    scopus 로고
    • Single-cell analysis reveals that insulation maintains signaling specificity between two yeast MAPK pathways with common components
    • Patterson JC, Klimenko ES, Thorner J (2010) Single-cell analysis reveals that insulation maintains signaling specificity between two yeast MAPK pathways with common components. Sci Signal 3(144):ra75.
    • (2010) Sci Signal , vol.3 , Issue.144
    • Patterson, J.C.1    Klimenko, E.S.2    Thorner, J.3
  • 32
    • 0038719729 scopus 로고    scopus 로고
    • The yersinia virulence factor YopM forms a novel protein complex with two cellular kinases
    • McDonald C, Vacratsis PO, Bliska JB, Dixon JE (2003) The yersinia virulence factor YopM forms a novel protein complex with two cellular kinases. J Biol Chem 278(20):18514-18523.
    • (2003) J Biol Chem , vol.278 , Issue.20 , pp. 18514-18523
    • McDonald, C.1    Vacratsis, P.O.2    Bliska, J.B.3    Dixon, J.E.4
  • 33
    • 0037436155 scopus 로고    scopus 로고
    • Rewiring MAP kinase pathways using alternative scaffold assembly mechanisms
    • Park SH, Zarrinpar A, Lim WA (2003) Rewiring MAP kinase pathways using alternative scaffold assembly mechanisms. Science 299(5609):1061-1064.
    • (2003) Science , vol.299 , Issue.5609 , pp. 1061-1064
    • Park, S.H.1    Zarrinpar, A.2    Lim, W.A.3
  • 34
    • 67650671869 scopus 로고    scopus 로고
    • Harnessing nature's toolbox: Regulatory elements for synthetic biology
    • Boyle PM, Silver PA (2009) Harnessing nature's toolbox: Regulatory elements for synthetic biology. J R Soc Interface 6(Suppl 4):S535-S546.
    • (2009) J R Soc Interface , vol.6 , Issue.SUPPL. 4
    • Boyle, P.M.1    Silver, P.A.2
  • 35
    • 34249894454 scopus 로고    scopus 로고
    • Rewiring cellular morphology pathways with synthetic guanine nucleotide exchange factors
    • Yeh BJ, Rutigliano RJ, Deb A, Bar-Sagi D, Lim WA (2007) Rewiring cellular morphology pathways with synthetic guanine nucleotide exchange factors. Nature 447(7144):596-600.
    • (2007) Nature , vol.447 , Issue.7144 , pp. 596-600
    • Yeh, B.J.1    Rutigliano, R.J.2    Deb, A.3    Bar-Sagi, D.4    Lim, W.A.5
  • 36
    • 80055069190 scopus 로고    scopus 로고
    • Protein structural modularity and robustness are associated with evolvability
    • Rorick MM, Wagner GP (2011) Protein structural modularity and robustness are associated with evolvability. Genome Biol Evol 3:456-475.
    • (2011) Genome Biol Evol , vol.3 , pp. 456-475
    • Rorick, M.M.1    Wagner, G.P.2
  • 37
    • 40449095056 scopus 로고    scopus 로고
    • Evolution of protein domain promiscuity in eukaryotes
    • Basu MK, Carmel L, Rogozin IB, Koonin EV (2008) Evolution of protein domain promiscuity in eukaryotes. Genome Res 18(3):449-461.
    • (2008) Genome Res , vol.18 , Issue.3 , pp. 449-461
    • Basu, M.K.1    Carmel, L.2    Rogozin, I.B.3    Koonin, E.V.4
  • 38
    • 78650973579 scopus 로고    scopus 로고
    • The assembly of a GTPase-kinase signalling complex by a bacterial catalytic scaffold
    • Selyunin AS, et al. (2011) The assembly of a GTPase-kinase signalling complex by a bacterial catalytic scaffold. Nature 469(7328):107-111.
    • (2011) Nature , vol.469 , Issue.7328 , pp. 107-111
    • Selyunin, A.S.1
  • 39
    • 77950847866 scopus 로고    scopus 로고
    • Transfer of carbohydrate-active enzymes from marine bacteria to Japanese gut microbiota
    • Hehemann JH, et al. (2010) Transfer of carbohydrate-active enzymes from marine bacteria to Japanese gut microbiota. Nature 464(7290):908-912.
    • (2010) Nature , vol.464 , Issue.7290 , pp. 908-912
    • Hehemann, J.H.1
  • 40
    • 0021027842 scopus 로고
    • A broad host range mobilization system for invivo genetic-engineering - Transposon mutagenesis in gram-negative bacteria
    • Simon R, Priefer U, Puhler A (1983) A broad host range mobilization system for invivo genetic-engineering - transposon mutagenesis in gram-negative bacteria. BioTechnology 1(9):784-791.
    • (1983) BioTechnology , vol.1 , Issue.9 , pp. 784-791
    • Simon, R.1    Priefer, U.2    Puhler, A.3
  • 42
    • 0030066558 scopus 로고    scopus 로고
    • A Bacteroides thetaiotaomicron outer membrane protein that is essential for utilization of maltooligosaccharides and starch
    • Reeves AR, D'Elia JN, Frias J, Salyers AA (1996) A Bacteroides thetaiotaomicron outer membrane protein that is essential for utilization of maltooligosaccharides and starch. J Bacteriol 178(3):823-830.
    • (1996) J Bacteriol , vol.178 , Issue.3 , pp. 823-830
    • Reeves, A.R.1    D'Elia, J.N.2    Frias, J.3    Salyers, A.A.4
  • 43
    • 84864112411 scopus 로고    scopus 로고
    • Prioritization of a plant polysaccharide over a mucus carbohydrate is enforced by a Bacteroides hybrid two-component system
    • Lynch JB, Sonnenburg JL (2012) Prioritization of a plant polysaccharide over a mucus carbohydrate is enforced by a Bacteroides hybrid two-component system. Mol Microbiol 85(3):478-491.
    • (2012) Mol Microbiol , vol.85 , Issue.3 , pp. 478-491
    • Lynch, J.B.1    Sonnenburg, J.L.2
  • 44
    • 46049115447 scopus 로고    scopus 로고
    • Starch catabolism by a prominent human gut symbiont is directed by the recognition of amylose helices
    • Koropatkin NM, Martens EC, Gordon JI, Smith TJ (2008) Starch catabolism by a prominent human gut symbiont is directed by the recognition of amylose helices. Structure 16(7):1105-1115.
    • (2008) Structure , vol.16 , Issue.7 , pp. 1105-1115
    • Koropatkin, N.M.1    Martens, E.C.2    Gordon, J.I.3    Smith, T.J.4
  • 46
    • 0031350056 scopus 로고    scopus 로고
    • NEXUS: An extensible file format for systematic information
    • Maddison DR, Swofford DL, Maddison WP (1997) NEXUS: An extensible file format for systematic information. Syst Biol 46(4):590-621.
    • (1997) Syst Biol , vol.46 , Issue.4 , pp. 590-621
    • Maddison, D.R.1    Swofford, D.L.2    Maddison, W.P.3
  • 47
    • 0010956475 scopus 로고
    • Interactive analysis of phylogeny and character evolution using the computer program MacClade
    • Maddison WP, Maddison DR (1989) Interactive analysis of phylogeny and character evolution using the computer program MacClade. Folia Primatol (Basel) 53(1-4):190-202.
    • (1989) Folia Primatol (Basel) , vol.53 , Issue.1-4 , pp. 190-202
    • Maddison, W.P.1    Maddison, D.R.2
  • 48
    • 28844432653 scopus 로고    scopus 로고
    • A common dimerization interface in bacterial response regulators KdpE and TorR
    • Toro-Roman A, Wu T, Stock AM (2005) A common dimerization interface in bacterial response regulators KdpE and TorR. Protein Sci 14(12):3077-3088.
    • (2005) Protein Sci , vol.14 , Issue.12 , pp. 3077-3088
    • Toro-Roman, A.1    Wu, T.2    Stock, A.M.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.