-
1
-
-
84962699241
-
The microenvironment of injured murine gut elicits a local pro-restitutive microbiota
-
Alam, A., Leoni, G., Quiros, M., Wu, H., Desai, C., Nishio, H., Jones, R.M., Nusrat, A., Neish, A.S., The microenvironment of injured murine gut elicits a local pro-restitutive microbiota. Nat. Microbiol., 1, 2016, 15021.
-
(2016)
Nat. Microbiol.
, vol.1
, pp. 15021
-
-
Alam, A.1
Leoni, G.2
Quiros, M.3
Wu, H.4
Desai, C.5
Nishio, H.6
Jones, R.M.7
Nusrat, A.8
Neish, A.S.9
-
2
-
-
84908306828
-
Correlation between intraluminal oxygen gradient and radial partitioning of intestinal microbiota
-
1055–63.e8
-
Albenberg, L., Esipova, T.V., Judge, C.P., Bittinger, K., Chen, J., Laughlin, A., Grunberg, S., Baldassano, R.N., Lewis, J.D., Li, H., et al. Correlation between intraluminal oxygen gradient and radial partitioning of intestinal microbiota. Gastroenterology, 147, 2014 1055–63.e8.
-
(2014)
Gastroenterology
, vol.147
-
-
Albenberg, L.1
Esipova, T.V.2
Judge, C.P.3
Bittinger, K.4
Chen, J.5
Laughlin, A.6
Grunberg, S.7
Baldassano, R.N.8
Lewis, J.D.9
Li, H.10
-
3
-
-
80052278497
-
Intestinal mucosal adherence and translocation of commensal bacteria at the early onset of type 2 diabetes: molecular mechanisms and probiotic treatment
-
Amar, J., Chabo, C., Waget, A., Klopp, P., Vachoux, C., Bermúdez-Humarán, L.G., Smirnova, N., Bergé, M., Sulpice, T., Lahtinen, S., et al. Intestinal mucosal adherence and translocation of commensal bacteria at the early onset of type 2 diabetes: molecular mechanisms and probiotic treatment. EMBO Mol. Med. 3 (2011), 559–572.
-
(2011)
EMBO Mol. Med.
, vol.3
, pp. 559-572
-
-
Amar, J.1
Chabo, C.2
Waget, A.3
Klopp, P.4
Vachoux, C.5
Bermúdez-Humarán, L.G.6
Smirnova, N.7
Bergé, M.8
Sulpice, T.9
Lahtinen, S.10
-
4
-
-
84859613830
-
Calcium and pH-dependent packing and release of the gel-forming MUC2 mucin
-
Ambort, D., Johansson, M.E., Gustafsson, J.K., Nilsson, H.E., Ermund, A., Johansson, B.R., Koeck, P.J., Hebert, H., Hansson, G.C., Calcium and pH-dependent packing and release of the gel-forming MUC2 mucin. Proc. Natl. Acad. Sci. USA 109 (2012), 5645–5650.
-
(2012)
Proc. Natl. Acad. Sci. USA
, vol.109
, pp. 5645-5650
-
-
Ambort, D.1
Johansson, M.E.2
Gustafsson, J.K.3
Nilsson, H.E.4
Ermund, A.5
Johansson, B.R.6
Koeck, P.J.7
Hebert, H.8
Hansson, G.C.9
-
5
-
-
84935019573
-
Bioimage analysis of Shigella infection reveals targeting of colonic crypts
-
Arena, E.T., Campbell-Valois, F.X., Tinevez, J.Y., Nigro, G., Sachse, M., Moya-Nilges, M., Nothelfer, K., Marteyn, B., Shorte, S.L., Sansonetti, P.J., Bioimage analysis of Shigella infection reveals targeting of colonic crypts. Proc. Natl. Acad. Sci. USA 112 (2015), E3282–E3290.
-
(2015)
Proc. Natl. Acad. Sci. USA
, vol.112
, pp. E3282-E3290
-
-
Arena, E.T.1
Campbell-Valois, F.X.2
Tinevez, J.Y.3
Nigro, G.4
Sachse, M.5
Moya-Nilges, M.6
Nothelfer, K.7
Marteyn, B.8
Shorte, S.L.9
Sansonetti, P.J.10
-
6
-
-
0035026232
-
The adherent gastrointestinal mucus gel layer: thickness and physical state in vivo
-
Atuma, C., Strugala, V., Allen, A., Holm, L., The adherent gastrointestinal mucus gel layer: thickness and physical state in vivo. Am. J. Physiol. Gastrointest. Liver Physiol. 280 (2001), G922–G929.
-
(2001)
Am. J. Physiol. Gastrointest. Liver Physiol.
, vol.280
, pp. G922-G929
-
-
Atuma, C.1
Strugala, V.2
Allen, A.3
Holm, L.4
-
7
-
-
84879515171
-
Bacteriophage adhering to mucus provide a non-host-derived immunity
-
Barr, J.J., Auro, R., Furlan, M., Whiteson, K.L., Erb, M.L., Pogliano, J., Stotland, A., Wolkowicz, R., Cutting, A.S., Doran, K.S., et al. Bacteriophage adhering to mucus provide a non-host-derived immunity. Proc. Natl. Acad. Sci. USA 110 (2013), 10771–10776.
-
(2013)
Proc. Natl. Acad. Sci. USA
, vol.110
, pp. 10771-10776
-
-
Barr, J.J.1
Auro, R.2
Furlan, M.3
Whiteson, K.L.4
Erb, M.L.5
Pogliano, J.6
Stotland, A.7
Wolkowicz, R.8
Cutting, A.S.9
Doran, K.S.10
-
8
-
-
0037408494
-
Pretreatment of mice with streptomycin provides a Salmonella enterica serovar Typhimurium colitis model that allows analysis of both pathogen and host
-
Barthel, M., Hapfelmeier, S., Quintanilla-Martínez, L., Kremer, M., Rohde, M., Hogardt, M., Pfeffer, K., Rüssmann, H., Hardt, W.D., Pretreatment of mice with streptomycin provides a Salmonella enterica serovar Typhimurium colitis model that allows analysis of both pathogen and host. Infect. Immun. 71 (2003), 2839–2858.
-
(2003)
Infect. Immun.
, vol.71
, pp. 2839-2858
-
-
Barthel, M.1
Hapfelmeier, S.2
Quintanilla-Martínez, L.3
Kremer, M.4
Rohde, M.5
Hogardt, M.6
Pfeffer, K.7
Rüssmann, H.8
Hardt, W.D.9
-
9
-
-
84999158316
-
Gram-positive bacteria are held at a distance in the colon mucus by the lectin-like protein ZG16
-
Bergström, J.H., Birchenough, G.M., Katona, G., Schroeder, B.O., Schütte, A., Ermund, A., Johansson, M.E., Hansson, G.C., Gram-positive bacteria are held at a distance in the colon mucus by the lectin-like protein ZG16. Proc. Natl. Acad. Sci. USA 113 (2016), 13833–13838.
-
(2016)
Proc. Natl. Acad. Sci. USA
, vol.113
, pp. 13833-13838
-
-
Bergström, J.H.1
Birchenough, G.M.2
Katona, G.3
Schroeder, B.O.4
Schütte, A.5
Ermund, A.6
Johansson, M.E.7
Hansson, G.C.8
-
10
-
-
85011085111
-
Core 1- and 3-derived O-glycans collectively maintain the colonic mucus barrier and protect against spontaneous colitis in mice
-
Bergstrom, K., Fu, J., Johansson, M.E., Liu, X., Gao, N., Wu, Q., Song, J., McDaniel, J.M., McGee, S., Chen, W., et al. Core 1- and 3-derived O-glycans collectively maintain the colonic mucus barrier and protect against spontaneous colitis in mice. Mucosal Immunol. 10 (2017), 91–103.
-
(2017)
Mucosal Immunol.
, vol.10
, pp. 91-103
-
-
Bergstrom, K.1
Fu, J.2
Johansson, M.E.3
Liu, X.4
Gao, N.5
Wu, Q.6
Song, J.7
McDaniel, J.M.8
McGee, S.9
Chen, W.10
-
11
-
-
84891444021
-
Interactions between parasites and microbial communities in the human gut
-
Berrilli, F., Di Cave, D., Cavallero, S., D'Amelio, S., Interactions between parasites and microbial communities in the human gut. Front. Cell. Infect. Microbiol., 2, 2012, 141.
-
(2012)
Front. Cell. Infect. Microbiol.
, vol.2
, pp. 141
-
-
Berrilli, F.1
Di Cave, D.2
Cavallero, S.3
D'Amelio, S.4
-
12
-
-
84875246466
-
Host-compound foraging by intestinal microbiota revealed by single-cell stable isotope probing
-
Berry, D., Stecher, B., Schintlmeister, A., Reichert, J., Brugiroux, S., Wild, B., Wanek, W., Richter, A., Rauch, I., Decker, T., et al. Host-compound foraging by intestinal microbiota revealed by single-cell stable isotope probing. Proc. Natl. Acad. Sci. USA 110 (2013), 4720–4725.
-
(2013)
Proc. Natl. Acad. Sci. USA
, vol.110
, pp. 4720-4725
-
-
Berry, D.1
Stecher, B.2
Schintlmeister, A.3
Reichert, J.4
Brugiroux, S.5
Wild, B.6
Wanek, W.7
Richter, A.8
Rauch, I.9
Decker, T.10
-
13
-
-
84976310851
-
A sentinel goblet cell guards the colonic crypt by triggering Nlrp6-dependent Muc2 secretion
-
Birchenough, G.M., Nyström, E.E., Johansson, M.E., Hansson, G.C., A sentinel goblet cell guards the colonic crypt by triggering Nlrp6-dependent Muc2 secretion. Science 352 (2016), 1535–1542.
-
(2016)
Science
, vol.352
, pp. 1535-1542
-
-
Birchenough, G.M.1
Nyström, E.E.2
Johansson, M.E.3
Hansson, G.C.4
-
14
-
-
0022644374
-
Location of bacteria in the mid-colon of the rat
-
Bollard, J.E., Vanderwee, M.A., Smith, G.W., Tasman-Jones, C., Gavin, J.B., Lee, S.P., Location of bacteria in the mid-colon of the rat. Appl. Environ. Microbiol. 51 (1986), 604–608.
-
(1986)
Appl. Environ. Microbiol.
, vol.51
, pp. 604-608
-
-
Bollard, J.E.1
Vanderwee, M.A.2
Smith, G.W.3
Tasman-Jones, C.4
Gavin, J.B.5
Lee, S.P.6
-
15
-
-
84870843366
-
Therapeutic helminth infection of macaques with idiopathic chronic diarrhea alters the inflammatory signature and mucosal microbiota of the colon
-
Broadhurst, M.J., Ardeshir, A., Kanwar, B., Mirpuri, J., Gundra, U.M., Leung, J.M., Wiens, K.E., Vujkovic-Cvijin, I., Kim, C.C., Yarovinsky, F., et al. Therapeutic helminth infection of macaques with idiopathic chronic diarrhea alters the inflammatory signature and mucosal microbiota of the colon. PLoS Pathog., 8, 2012, e1003000.
-
(2012)
PLoS Pathog.
, vol.8
, pp. e1003000
-
-
Broadhurst, M.J.1
Ardeshir, A.2
Kanwar, B.3
Mirpuri, J.4
Gundra, U.M.5
Leung, J.M.6
Wiens, K.E.7
Vujkovic-Cvijin, I.8
Kim, C.C.9
Yarovinsky, F.10
-
16
-
-
84969704060
-
Culturing of ‘unculturable’ human microbiota reveals novel taxa and extensive sporulation
-
Browne, H.P., Forster, S.C., Anonye, B.O., Kumar, N., Neville, B.A., Stares, M.D., Goulding, D., Lawley, T.D., Culturing of ‘unculturable’ human microbiota reveals novel taxa and extensive sporulation. Nature 533 (2016), 543–546.
-
(2016)
Nature
, vol.533
, pp. 543-546
-
-
Browne, H.P.1
Forster, S.C.2
Anonye, B.O.3
Kumar, N.4
Neville, B.A.5
Stares, M.D.6
Goulding, D.7
Lawley, T.D.8
-
17
-
-
84924301510
-
Dietary emulsifiers impact the mouse gut microbiota promoting colitis and metabolic syndrome
-
Chassaing, B., Koren, O., Goodrich, J.K., Poole, A.C., Srinivasan, S., Ley, R.E., Gewirtz, A.T., Dietary emulsifiers impact the mouse gut microbiota promoting colitis and metabolic syndrome. Nature 519 (2015), 92–96.
-
(2015)
Nature
, vol.519
, pp. 92-96
-
-
Chassaing, B.1
Koren, O.2
Goodrich, J.K.3
Poole, A.C.4
Srinivasan, S.5
Ley, R.E.6
Gewirtz, A.T.7
-
18
-
-
0020681426
-
Bacterial populations associated with different regions of the human colon wall
-
Croucher, S.C., Houston, A.P., Bayliss, C.E., Turner, R.J., Bacterial populations associated with different regions of the human colon wall. Appl. Environ. Microbiol. 45 (1983), 1025–1033.
-
(1983)
Appl. Environ. Microbiol.
, vol.45
, pp. 1025-1033
-
-
Croucher, S.C.1
Houston, A.P.2
Bayliss, C.E.3
Turner, R.J.4
-
19
-
-
0344172842
-
The domain-specific probe EUB338 is insufficient for the detection of all bacteria: development and evaluation of a more comprehensive probe set
-
Daims, H., Brühl, A., Amann, R., Schleifer, K.H., Wagner, M., The domain-specific probe EUB338 is insufficient for the detection of all bacteria: development and evaluation of a more comprehensive probe set. Syst. Appl. Microbiol. 22 (1999), 434–444.
-
(1999)
Syst. Appl. Microbiol.
, vol.22
, pp. 434-444
-
-
Daims, H.1
Brühl, A.2
Amann, R.3
Schleifer, K.H.4
Wagner, M.5
-
20
-
-
84919884555
-
Microbiota organization is a distinct feature of proximal colorectal cancers
-
Dejea, C.M., Wick, E.C., Hechenbleikner, E.M., White, J.R., Mark Welch, J.L., Rossetti, B.J., Peterson, S.N., Snesrud, E.C., Borisy, G.G., Lazarev, M., et al. Microbiota organization is a distinct feature of proximal colorectal cancers. Proc. Natl. Acad. Sci. USA 111 (2014), 18321–18326.
-
(2014)
Proc. Natl. Acad. Sci. USA
, vol.111
, pp. 18321-18326
-
-
Dejea, C.M.1
Wick, E.C.2
Hechenbleikner, E.M.3
White, J.R.4
Mark Welch, J.L.5
Rossetti, B.J.6
Peterson, S.N.7
Snesrud, E.C.8
Borisy, G.G.9
Lazarev, M.10
-
21
-
-
84907874003
-
Spatial distribution of nitrogen fixation in methane seep sediment and the role of the ANME archaea
-
Dekas, A.E., Chadwick, G.L., Bowles, M.W., Joye, S.B., Orphan, V.J., Spatial distribution of nitrogen fixation in methane seep sediment and the role of the ANME archaea. Environ. Microbiol. 16 (2014), 3012–3029.
-
(2014)
Environ. Microbiol.
, vol.16
, pp. 3012-3029
-
-
Dekas, A.E.1
Chadwick, G.L.2
Bowles, M.W.3
Joye, S.B.4
Orphan, V.J.5
-
22
-
-
0037386567
-
Citrobacter rodentium translocated intimin receptor (Tir) is an essential virulence factor needed for actin condensation, intestinal colonization and colonic hyperplasia in mice
-
Deng, W., Vallance, B.A., Li, Y., Puente, J.L., Finlay, B.B., Citrobacter rodentium translocated intimin receptor (Tir) is an essential virulence factor needed for actin condensation, intestinal colonization and colonic hyperplasia in mice. Mol. Microbiol. 48 (2003), 95–115.
-
(2003)
Mol. Microbiol.
, vol.48
, pp. 95-115
-
-
Deng, W.1
Vallance, B.A.2
Li, Y.3
Puente, J.L.4
Finlay, B.B.5
-
23
-
-
84995739780
-
A Dietary Fiber-Deprived Gut Microbiota Degrades the Colonic Mucus Barrier and Enhances Pathogen Susceptibility
-
Desai, M.S., Seekatz, A.M., Koropatkin, N.M., Kamada, N., Hickey, C.A., Wolter, M., Pudlo, N.A., Kitamoto, S., Terrapon, N., Muller, A., et al. A Dietary Fiber-Deprived Gut Microbiota Degrades the Colonic Mucus Barrier and Enhances Pathogen Susceptibility. Cell 167 (2016), 1339–1353.e21.
-
(2016)
Cell
, vol.167
, pp. 1339-1353.e21
-
-
Desai, M.S.1
Seekatz, A.M.2
Koropatkin, N.M.3
Kamada, N.4
Hickey, C.A.5
Wolter, M.6
Pudlo, N.A.7
Kitamoto, S.8
Terrapon, N.9
Muller, A.10
-
24
-
-
84951568821
-
Gut biogeography of the bacterial microbiota
-
Donaldson, G.P., Lee, S.M., Mazmanian, S.K., Gut biogeography of the bacterial microbiota. Nat. Rev. Microbiol. 14 (2016), 20–32.
-
(2016)
Nat. Rev. Microbiol.
, vol.14
, pp. 20-32
-
-
Donaldson, G.P.1
Lee, S.M.2
Mazmanian, S.K.3
-
25
-
-
84987921775
-
MicrobeJ, a tool for high throughput bacterial cell detection and quantitative analysis
-
Ducret, A., Quardokus, E.M., Brun, Y.V., MicrobeJ, a tool for high throughput bacterial cell detection and quantitative analysis. Nat. Microbiol., 1, 2016, 16077.
-
(2016)
Nat. Microbiol.
, vol.1
, pp. 16077
-
-
Ducret, A.1
Quardokus, E.M.2
Brun, Y.V.3
-
26
-
-
84944234155
-
Quantitative Imaging of Gut Microbiota Spatial Organization
-
Earle, K.A., Billings, G., Sigal, M., Lichtman, J.S., Hansson, G.C., Elias, J.E., Amieva, M.R., Huang, K.C., Sonnenburg, J.L., Quantitative Imaging of Gut Microbiota Spatial Organization. Cell Host Microbe 18 (2015), 478–488.
-
(2015)
Cell Host Microbe
, vol.18
, pp. 478-488
-
-
Earle, K.A.1
Billings, G.2
Sigal, M.3
Lichtman, J.S.4
Hansson, G.C.5
Elias, J.E.6
Amieva, M.R.7
Huang, K.C.8
Sonnenburg, J.L.9
-
27
-
-
20544444045
-
Diversity of the human intestinal microbial flora
-
Eckburg, P.B., Bik, E.M., Bernstein, C.N., Purdom, E., Dethlefsen, L., Sargent, M., Gill, S.R., Nelson, K.E., Relman, D.A., Diversity of the human intestinal microbial flora. Science 308 (2005), 1635–1638.
-
(2005)
Science
, vol.308
, pp. 1635-1638
-
-
Eckburg, P.B.1
Bik, E.M.2
Bernstein, C.N.3
Purdom, E.4
Dethlefsen, L.5
Sargent, M.6
Gill, S.R.7
Nelson, K.E.8
Relman, D.A.9
-
28
-
-
84892638554
-
Mucus properties and goblet cell quantification in mouse, rat and human ileal Peyer's patches
-
Ermund, A., Gustafsson, J.K., Hansson, G.C., Keita, A.V., Mucus properties and goblet cell quantification in mouse, rat and human ileal Peyer's patches. PLoS ONE, 8, 2013, e83688.
-
(2013)
PLoS ONE
, vol.8
, pp. e83688
-
-
Ermund, A.1
Gustafsson, J.K.2
Hansson, G.C.3
Keita, A.V.4
-
29
-
-
84883319282
-
Studies of mucus in mouse stomach, small intestine, and colon. I. Gastrointestinal mucus layers have different properties depending on location as well as over the Peyer's patches
-
Ermund, A., Schütte, A., Johansson, M.E.V., Gustafsson, J.K., Hansson, G.C., Studies of mucus in mouse stomach, small intestine, and colon. I. Gastrointestinal mucus layers have different properties depending on location as well as over the Peyer's patches. Am. J. Physiol. Gastrointest. Liver Physiol. 305 (2013), G341–G347.
-
(2013)
Am. J. Physiol. Gastrointest. Liver Physiol.
, vol.305
, pp. G341-G347
-
-
Ermund, A.1
Schütte, A.2
Johansson, M.E.V.3
Gustafsson, J.K.4
Hansson, G.C.5
-
30
-
-
0018142276
-
Localization of carbohydrate components in rat colon with fluoresceinated lectins
-
Essner, E., Schreiber, J., Griewski, R.A., Localization of carbohydrate components in rat colon with fluoresceinated lectins. J. Histochem. Cytochem. 26 (1978), 452–458.
-
(1978)
J. Histochem. Cytochem.
, vol.26
, pp. 452-458
-
-
Essner, E.1
Schreiber, J.2
Griewski, R.A.3
-
31
-
-
84879744885
-
The long-term stability of the human gut microbiota
-
Faith, J.J., Guruge, J.L., Charbonneau, M., Subramanian, S., Seedorf, H., Goodman, A.L., Clemente, J.C., Knight, R., Heath, A.C., Leibel, R.L., et al. The long-term stability of the human gut microbiota. Science, 341, 2013, 1237439.
-
(2013)
Science
, vol.341
, pp. 1237439
-
-
Faith, J.J.1
Guruge, J.L.2
Charbonneau, M.3
Subramanian, S.4
Seedorf, H.5
Goodman, A.L.6
Clemente, J.C.7
Knight, R.8
Heath, A.C.9
Leibel, R.L.10
-
32
-
-
84902578840
-
Anatomical localization of commensal bacteria in immune cell homeostasis and disease
-
Fung, T.C., Artis, D., Sonnenberg, G.F., Anatomical localization of commensal bacteria in immune cell homeostasis and disease. Immunol. Rev. 260 (2014), 35–49.
-
(2014)
Immunol. Rev.
, vol.260
, pp. 35-49
-
-
Fung, T.C.1
Artis, D.2
Sonnenberg, G.F.3
-
33
-
-
84940984328
-
In vivo imaging and tracking of host-microbiota interactions via metabolic labeling of gut anaerobic bacteria
-
Geva-Zatorsky, N., Alvarez, D., Hudak, J.E., Reading, N.C., Erturk-Hasdemir, D., Dasgupta, S., von Andrian, U.H., Kasper, D.L., In vivo imaging and tracking of host-microbiota interactions via metabolic labeling of gut anaerobic bacteria. Nat. Med. 21 (2015), 1091–1100.
-
(2015)
Nat. Med.
, vol.21
, pp. 1091-1100
-
-
Geva-Zatorsky, N.1
Alvarez, D.2
Hudak, J.E.3
Reading, N.C.4
Erturk-Hasdemir, D.5
Dasgupta, S.6
von Andrian, U.H.7
Kasper, D.L.8
-
34
-
-
84907208430
-
Innate lymphoid cells regulate intestinal epithelial cell glycosylation
-
Goto, Y., Obata, T., Kunisawa, J., Sato, S., Ivanov, I.I., Lamichhane, A., Takeyama, N., Kamioka, M., Sakamoto, M., Matsuki, T., et al. Innate lymphoid cells regulate intestinal epithelial cell glycosylation. Science, 345, 2014, 1254009.
-
(2014)
Science
, vol.345
, pp. 1254009
-
-
Goto, Y.1
Obata, T.2
Kunisawa, J.3
Sato, S.4
Ivanov, I.I.5
Lamichhane, A.6
Takeyama, N.7
Kamioka, M.8
Sakamoto, M.9
Matsuki, T.10
-
35
-
-
79954533635
-
The extraordinarily complex but highly structured organization of intestinal mucus-gel unveiled in multicolor images
-
Gouyer, V., Gottrand, F., Desseyn, J.L., The extraordinarily complex but highly structured organization of intestinal mucus-gel unveiled in multicolor images. PLoS ONE, 6, 2011, e18761.
-
(2011)
PLoS ONE
, vol.6
, pp. e18761
-
-
Gouyer, V.1
Gottrand, F.2
Desseyn, J.L.3
-
36
-
-
84885080349
-
Bacterial community mapping of the mouse gastrointestinal tract
-
Gu, S., Chen, D., Zhang, J.N., Lv, X., Wang, K., Duan, L.P., Nie, Y., Wu, X.L., Bacterial community mapping of the mouse gastrointestinal tract. PLoS ONE, 8, 2013, e74957.
-
(2013)
PLoS ONE
, vol.8
, pp. e74957
-
-
Gu, S.1
Chen, D.2
Zhang, J.N.3
Lv, X.4
Wang, K.5
Duan, L.P.6
Nie, Y.7
Wu, X.L.8
-
37
-
-
84971323731
-
Periodontitis: from microbial immune subversion to systemic inflammation
-
Hajishengallis, G., Periodontitis: from microbial immune subversion to systemic inflammation. Nat. Rev. Immunol. 15 (2015), 30–44.
-
(2015)
Nat. Rev. Immunol.
, vol.15
, pp. 30-44
-
-
Hajishengallis, G.1
-
38
-
-
79956093663
-
Muc5ac: a critical component mediating the rejection of enteric nematodes
-
Hasnain, S.Z., Evans, C.M., Roy, M., Gallagher, A.L., Kindrachuk, K.N., Barron, L., Dickey, B.F., Wilson, M.S., Wynn, T.A., Grencis, R.K., Thornton, D.J., Muc5ac: a critical component mediating the rejection of enteric nematodes. J. Exp. Med. 208 (2011), 893–900.
-
(2011)
J. Exp. Med.
, vol.208
, pp. 893-900
-
-
Hasnain, S.Z.1
Evans, C.M.2
Roy, M.3
Gallagher, A.L.4
Kindrachuk, K.N.5
Barron, L.6
Dickey, B.F.7
Wilson, M.S.8
Wynn, T.A.9
Grencis, R.K.10
Thornton, D.J.11
-
39
-
-
84929298167
-
Colitogenic Bacteroides thetaiotaomicron Antigens Access Host Immune Cells in a Sulfatase-Dependent Manner via Outer Membrane Vesicles
-
Hickey, C.A., Kuhn, K.A., Donermeyer, D.L., Porter, N.T., Jin, C., Cameron, E.A., Jung, H., Kaiko, G.E., Wegorzewska, M., Malvin, N.P., et al. Colitogenic Bacteroides thetaiotaomicron Antigens Access Host Immune Cells in a Sulfatase-Dependent Manner via Outer Membrane Vesicles. Cell Host Microbe 17 (2015), 672–680.
-
(2015)
Cell Host Microbe
, vol.17
, pp. 672-680
-
-
Hickey, C.A.1
Kuhn, K.A.2
Donermeyer, D.L.3
Porter, N.T.4
Jin, C.5
Cameron, E.A.6
Jung, H.7
Kaiko, G.E.8
Wegorzewska, M.9
Malvin, N.P.10
-
40
-
-
80051925894
-
The human commensal Bacteroides fragilis binds intestinal mucin
-
Huang, J.Y., Lee, S.M., Mazmanian, S.K., The human commensal Bacteroides fragilis binds intestinal mucin. Anaerobe 17 (2011), 137–141.
-
(2011)
Anaerobe
, vol.17
, pp. 137-141
-
-
Huang, J.Y.1
Lee, S.M.2
Mazmanian, S.K.3
-
41
-
-
84861964286
-
Interactions between commensal fungi and the C-type lectin receptor Dectin-1 influence colitis
-
Iliev, I.D., Funari, V.A., Taylor, K.D., Nguyen, Q., Reyes, C.N., Strom, S.P., Brown, J., Becker, C.A., Fleshner, P.R., Dubinsky, M., et al. Interactions between commensal fungi and the C-type lectin receptor Dectin-1 influence colitis. Science 336 (2012), 1314–1317.
-
(2012)
Science
, vol.336
, pp. 1314-1317
-
-
Iliev, I.D.1
Funari, V.A.2
Taylor, K.D.3
Nguyen, Q.4
Reyes, C.N.5
Strom, S.P.6
Brown, J.7
Becker, C.A.8
Fleshner, P.R.9
Dubinsky, M.10
-
42
-
-
70350343544
-
Induction of intestinal Th17 cells by segmented filamentous bacteria
-
Ivanov, I.I., Atarashi, K., Manel, N., Brodie, E.L., Shima, T., Karaoz, U., Wei, D., Goldfarb, K.C., Santee, C.A., Lynch, S.V., et al. Induction of intestinal Th17 cells by segmented filamentous bacteria. Cell 139 (2009), 485–498.
-
(2009)
Cell
, vol.139
, pp. 485-498
-
-
Ivanov, I.I.1
Atarashi, K.2
Manel, N.3
Brodie, E.L.4
Shima, T.5
Karaoz, U.6
Wei, D.7
Goldfarb, K.C.8
Santee, C.A.9
Lynch, S.V.10
-
43
-
-
84920983163
-
Spatial and temporal features of the growth of a bacterial species colonizing the zebrafish gut
-
Jemielita, M., Taormina, M.J., Burns, A.R., Hampton, J.S., Rolig, A.S., Guillemin, K., Parthasarathy, R., Spatial and temporal features of the growth of a bacterial species colonizing the zebrafish gut. MBio, 5, 2014, 5.
-
(2014)
MBio
, vol.5
, pp. 5
-
-
Jemielita, M.1
Taormina, M.J.2
Burns, A.R.3
Hampton, J.S.4
Rolig, A.S.5
Guillemin, K.6
Parthasarathy, R.7
-
44
-
-
84856350754
-
Preservation of mucus in histological sections, immunostaining of mucins in fixed tissue, and localization of bacteria with FISH
-
Johansson, M.E., Hansson, G.C., Preservation of mucus in histological sections, immunostaining of mucins in fixed tissue, and localization of bacteria with FISH. Methods Mol. Biol. 842 (2012), 229–235.
-
(2012)
Methods Mol. Biol.
, vol.842
, pp. 229-235
-
-
Johansson, M.E.1
Hansson, G.C.2
-
45
-
-
84981169022
-
Immunological aspects of intestinal mucus and mucins
-
Johansson, M.E.V., Hansson, G.C., Immunological aspects of intestinal mucus and mucins. Nat. Rev. Immunol. 16 (2016), 639–649.
-
(2016)
Nat. Rev. Immunol.
, vol.16
, pp. 639-649
-
-
Johansson, M.E.V.1
Hansson, G.C.2
-
46
-
-
54449083567
-
The inner of the two Muc2 mucin-dependent mucus layers in colon is devoid of bacteria
-
Johansson, M.E., Phillipson, M., Petersson, J., Velcich, A., Holm, L., Hansson, G.C., The inner of the two Muc2 mucin-dependent mucus layers in colon is devoid of bacteria. Proc. Natl. Acad. Sci. USA 105 (2008), 15064–15069.
-
(2008)
Proc. Natl. Acad. Sci. USA
, vol.105
, pp. 15064-15069
-
-
Johansson, M.E.1
Phillipson, M.2
Petersson, J.3
Velcich, A.4
Holm, L.5
Hansson, G.C.6
-
47
-
-
79952748335
-
The two mucus layers of colon are organized by the MUC2 mucin, whereas the outer layer is a legislator of host-microbial interactions
-
Johansson, M.E., Larsson, J.M., Hansson, G.C., The two mucus layers of colon are organized by the MUC2 mucin, whereas the outer layer is a legislator of host-microbial interactions. Proc. Natl. Acad. Sci. USA 108 (2011), 4659–4665.
-
(2011)
Proc. Natl. Acad. Sci. USA
, vol.108
, pp. 4659-4665
-
-
Johansson, M.E.1
Larsson, J.M.2
Hansson, G.C.3
-
48
-
-
84891736162
-
Bacteria penetrate the normally impenetrable inner colon mucus layer in both murine colitis models and patients with ulcerative colitis
-
Johansson, M.E., Gustafsson, J.K., Holmén-Larsson, J., Jabbar, K.S., Xia, L., Xu, H., Ghishan, F.K., Carvalho, F.A., Gewirtz, A.T., Sjövall, H., Hansson, G.C., Bacteria penetrate the normally impenetrable inner colon mucus layer in both murine colitis models and patients with ulcerative colitis. Gut 63 (2014), 281–291.
-
(2014)
Gut
, vol.63
, pp. 281-291
-
-
Johansson, M.E.1
Gustafsson, J.K.2
Holmén-Larsson, J.3
Jabbar, K.S.4
Xia, L.5
Xu, H.6
Ghishan, F.K.7
Carvalho, F.A.8
Gewirtz, A.T.9
Sjövall, H.10
Hansson, G.C.11
-
49
-
-
84947425582
-
Normalization of Host Intestinal Mucus Layers Requires Long-Term Microbial Colonization
-
Johansson, M.E.V., Jakobsson, H.E., Holmén-Larsson, J., Schütte, A., Ermund, A., Rodríguez-Piñeiro, A.M., Arike, L., Wising, C., Svensson, F., Bäckhed, F., Hansson, G.C., Normalization of Host Intestinal Mucus Layers Requires Long-Term Microbial Colonization. Cell Host Microbe 18 (2015), 582–592.
-
(2015)
Cell Host Microbe
, vol.18
, pp. 582-592
-
-
Johansson, M.E.V.1
Jakobsson, H.E.2
Holmén-Larsson, J.3
Schütte, A.4
Ermund, A.5
Rodríguez-Piñeiro, A.M.6
Arike, L.7
Wising, C.8
Svensson, F.9
Bäckhed, F.10
Hansson, G.C.11
-
50
-
-
84879343905
-
Control of pathogens and pathobionts by the gut microbiota
-
Kamada, N., Chen, G.Y., Inohara, N., Núñez, G., Control of pathogens and pathobionts by the gut microbiota. Nat. Immunol. 14 (2013), 685–690.
-
(2013)
Nat. Immunol.
, vol.14
, pp. 685-690
-
-
Kamada, N.1
Chen, G.Y.2
Inohara, N.3
Núñez, G.4
-
51
-
-
77951107086
-
Synthetic biology: applications come of age
-
Khalil, A.S., Collins, J.J., Synthetic biology: applications come of age. Nat. Rev. Genet. 11 (2010), 367–379.
-
(2010)
Nat. Rev. Genet.
, vol.11
, pp. 367-379
-
-
Khalil, A.S.1
Collins, J.J.2
-
52
-
-
0027411385
-
Intestinal, segmented, filamentous bacteria in a wide range of vertebrate species
-
Klaasen, H.L., Koopman, J.P., Van den Brink, M.E., Bakker, M.H., Poelma, F.G., Beynen, A.C., Intestinal, segmented, filamentous bacteria in a wide range of vertebrate species. Lab. Anim. 27 (1993), 141–150.
-
(1993)
Lab. Anim.
, vol.27
, pp. 141-150
-
-
Klaasen, H.L.1
Koopman, J.P.2
Van den Brink, M.E.3
Bakker, M.H.4
Poelma, F.G.5
Beynen, A.C.6
-
53
-
-
85006339909
-
Cosmc is an X-linked inflammatory bowel disease risk gene that spatially regulates gut microbiota and contributes to sex-specific risk
-
Kudelka, M.R., Hinrichs, B.H., Darby, T., Moreno, C.S., Nishio, H., Cutler, C.E., Wang, J., Wu, H., Zeng, J., Wang, Y., et al. Cosmc is an X-linked inflammatory bowel disease risk gene that spatially regulates gut microbiota and contributes to sex-specific risk. Proc. Natl. Acad. Sci. USA 113 (2016), 14787–14792.
-
(2016)
Proc. Natl. Acad. Sci. USA
, vol.113
, pp. 14787-14792
-
-
Kudelka, M.R.1
Hinrichs, B.H.2
Darby, T.3
Moreno, C.S.4
Nishio, H.5
Cutler, C.E.6
Wang, J.7
Wu, H.8
Zeng, J.9
Wang, Y.10
-
54
-
-
84994399678
-
Culture of previously uncultured members of the human gut microbiota by culturomics
-
Lagier, J.C., Khelaifia, S., Alou, M.T., Ndongo, S., Dione, N., Hugon, P., Caputo, A., Cadoret, F., Traore, S.I., Seck, E.H., et al. Culture of previously uncultured members of the human gut microbiota by culturomics. Nat. Microbiol., 1, 2016, 16203.
-
(2016)
Nat. Microbiol.
, vol.1
, pp. 16203
-
-
Lagier, J.C.1
Khelaifia, S.2
Alou, M.T.3
Ndongo, S.4
Dione, N.5
Hugon, P.6
Caputo, A.7
Cadoret, F.8
Traore, S.I.9
Seck, E.H.10
-
55
-
-
84884411052
-
Bacterial colonization factors control specificity and stability of the gut microbiota
-
Lee, S.M., Donaldson, G.P., Mikulski, Z., Boyajian, S., Ley, K., Mazmanian, S.K., Bacterial colonization factors control specificity and stability of the gut microbiota. Nature 501 (2013), 426–429.
-
(2013)
Nature
, vol.501
, pp. 426-429
-
-
Lee, S.M.1
Donaldson, G.P.2
Mikulski, Z.3
Boyajian, S.4
Ley, K.5
Mazmanian, S.K.6
-
56
-
-
84930900956
-
Optical reconstruction of murine colorectal mucosa at cellular resolution
-
Liu, C.Y., Dubé, P.E., Girish, N., Reddy, A.T., Polk, D.B., Optical reconstruction of murine colorectal mucosa at cellular resolution. Am. J. Physiol. Gastrointest. Liver Physiol. 308 (2015), G721–G735.
-
(2015)
Am. J. Physiol. Gastrointest. Liver Physiol.
, vol.308
, pp. G721-G735
-
-
Liu, C.Y.1
Dubé, P.E.2
Girish, N.3
Reddy, A.T.4
Polk, D.B.5
-
57
-
-
84902590860
-
REG3γ-deficient mice have altered mucus distribution and increased mucosal inflammatory responses to the microbiota and enteric pathogens in the ileum
-
Loonen, L.M., Stolte, E.H., Jaklofsky, M.T., Meijerink, M., Dekker, J., van Baarlen, P., Wells, J.M., REG3γ-deficient mice have altered mucus distribution and increased mucosal inflammatory responses to the microbiota and enteric pathogens in the ileum. Mucosal Immunol. 7 (2014), 939–947.
-
(2014)
Mucosal Immunol.
, vol.7
, pp. 939-947
-
-
Loonen, L.M.1
Stolte, E.H.2
Jaklofsky, M.T.3
Meijerink, M.4
Dekker, J.5
van Baarlen, P.6
Wells, J.M.7
-
58
-
-
33846102841
-
probeBase–an online resource for rRNA-targeted oligonucleotide probes: new features 2007
-
Loy, A., Maixner, F., Wagner, M., Horn, M., probeBase–an online resource for rRNA-targeted oligonucleotide probes: new features 2007. Nucleic Acids Res. 35 (2007), D800–D804.
-
(2007)
Nucleic Acids Res.
, vol.35
, pp. D800-D804
-
-
Loy, A.1
Maixner, F.2
Wagner, M.3
Horn, M.4
-
59
-
-
84939570686
-
The bilateral responsiveness between intestinal microbes and IgA
-
Macpherson, A.J., Köller, Y., McCoy, K.D., The bilateral responsiveness between intestinal microbes and IgA. Trends Immunol. 36 (2015), 460–470.
-
(2015)
Trends Immunol.
, vol.36
, pp. 460-470
-
-
Macpherson, A.J.1
Köller, Y.2
McCoy, K.D.3
-
60
-
-
84957836946
-
Biogeography of a human oral microbiome at the micron scale
-
Mark Welch, J.L., Rossetti, B.J., Rieken, C.W., Dewhirst, F.E., Borisy, G.G., Biogeography of a human oral microbiome at the micron scale. Proc. Natl. Acad. Sci. USA 113 (2016), E791–E800.
-
(2016)
Proc. Natl. Acad. Sci. USA
, vol.113
, pp. E791-E800
-
-
Mark Welch, J.L.1
Rossetti, B.J.2
Rieken, C.W.3
Dewhirst, F.E.4
Borisy, G.G.5
-
61
-
-
84889681706
-
Western diet induces dysbiosis with increased E coli in CEABAC10 mice, alters host barrier function favouring AIEC colonisation
-
Martinez-Medina, M., Denizot, J., Dreux, N., Robin, F., Billard, E., Bonnet, R., Darfeuille-Michaud, A., Barnich, N., Western diet induces dysbiosis with increased E coli in CEABAC10 mice, alters host barrier function favouring AIEC colonisation. Gut 63 (2014), 116–124.
-
(2014)
Gut
, vol.63
, pp. 116-124
-
-
Martinez-Medina, M.1
Denizot, J.2
Dreux, N.3
Robin, F.4
Billard, E.5
Bonnet, R.6
Darfeuille-Michaud, A.7
Barnich, N.8
-
62
-
-
0030737814
-
Histochemistry of the surface mucous gel layer of the human colon
-
Matsuo, K., Ota, H., Akamatsu, T., Sugiyama, A., Katsuyama, T., Histochemistry of the surface mucous gel layer of the human colon. Gut 40 (1997), 782–789.
-
(1997)
Gut
, vol.40
, pp. 782-789
-
-
Matsuo, K.1
Ota, H.2
Akamatsu, T.3
Sugiyama, A.4
Katsuyama, T.5
-
63
-
-
84965315556
-
The Wilde Medal and Lecture of the Manchester Literary and Philosophical Society
-
Metchnikoff, E., The Wilde Medal and Lecture of the Manchester Literary and Philosophical Society. BMJ 1 (1901), 1027–1028.
-
(1901)
BMJ
, vol.1
, pp. 1027-1028
-
-
Metchnikoff, E.1
-
64
-
-
84938323503
-
Programming a Human Commensal Bacterium, Bacteroides thetaiotaomicron, to Sense and Respond to Stimuli in the Murine Gut Microbiota
-
Mimee, M., Tucker, A.C., Voigt, C.A., Lu, T.K., Programming a Human Commensal Bacterium, Bacteroides thetaiotaomicron, to Sense and Respond to Stimuli in the Murine Gut Microbiota. Cell Syst. 1 (2015), 62–71.
-
(2015)
Cell Syst.
, vol.1
, pp. 62-71
-
-
Mimee, M.1
Tucker, A.C.2
Voigt, C.A.3
Lu, T.K.4
-
65
-
-
84921786777
-
Regional specialization within the intestinal immune system
-
Mowat, A.M., Agace, W.W., Regional specialization within the intestinal immune system. Nat. Rev. Immunol. 14 (2014), 667–685.
-
(2014)
Nat. Rev. Immunol.
, vol.14
, pp. 667-685
-
-
Mowat, A.M.1
Agace, W.W.2
-
66
-
-
84856011412
-
Salmonella gut invasion involves TTSS-2-dependent epithelial traversal, basolateral exit, and uptake by epithelium-sampling lamina propria phagocytes
-
Müller, A.J., Kaiser, P., Dittmar, K.E., Weber, T.C., Haueter, S., Endt, K., Songhet, P., Zellweger, C., Kremer, M., Fehling, H.J., Hardt, W.D., Salmonella gut invasion involves TTSS-2-dependent epithelial traversal, basolateral exit, and uptake by epithelium-sampling lamina propria phagocytes. Cell Host Microbe 11 (2012), 19–32.
-
(2012)
Cell Host Microbe
, vol.11
, pp. 19-32
-
-
Müller, A.J.1
Kaiser, P.2
Dittmar, K.E.3
Weber, T.C.4
Haueter, S.5
Endt, K.6
Songhet, P.7
Zellweger, C.8
Kremer, M.9
Fehling, H.J.10
Hardt, W.D.11
-
67
-
-
79953025268
-
Spatial organization of intestinal microbiota in the mouse ascending colon
-
Nava, G.M., Friedrichsen, H.J., Stappenbeck, T.S., Spatial organization of intestinal microbiota in the mouse ascending colon. ISME J. 5 (2011), 627–638.
-
(2011)
ISME J.
, vol.5
, pp. 627-638
-
-
Nava, G.M.1
Friedrichsen, H.J.2
Stappenbeck, T.S.3
-
68
-
-
22144479779
-
Effect of pH and antibiotics on microbial overgrowth in the stomachs and duodena of patients undergoing percutaneous endoscopic gastrostomy feeding
-
O'May, G.A., Reynolds, N., Smith, A.R., Kennedy, A., Macfarlane, G.T., Effect of pH and antibiotics on microbial overgrowth in the stomachs and duodena of patients undergoing percutaneous endoscopic gastrostomy feeding. J. Clin. Microbiol. 43 (2005), 3059–3065.
-
(2005)
J. Clin. Microbiol.
, vol.43
, pp. 3059-3065
-
-
O'May, G.A.1
Reynolds, N.2
Smith, A.R.3
Kennedy, A.4
Macfarlane, G.T.5
-
69
-
-
77952208123
-
Indigenous opportunistic bacteria inhabit mammalian gut-associated lymphoid tissues and share a mucosal antibody-mediated symbiosis
-
Obata, T., Goto, Y., Kunisawa, J., Sato, S., Sakamoto, M., Setoyama, H., Matsuki, T., Nonaka, K., Shibata, N., Gohda, M., et al. Indigenous opportunistic bacteria inhabit mammalian gut-associated lymphoid tissues and share a mucosal antibody-mediated symbiosis. Proc. Natl. Acad. Sci. USA 107 (2010), 7419–7424.
-
(2010)
Proc. Natl. Acad. Sci. USA
, vol.107
, pp. 7419-7424
-
-
Obata, T.1
Goto, Y.2
Kunisawa, J.3
Sato, S.4
Sakamoto, M.5
Setoyama, H.6
Matsuki, T.7
Nonaka, K.8
Shibata, N.9
Gohda, M.10
-
70
-
-
84863472497
-
A crypt-specific core microbiota resides in the mouse colon
-
Pédron, T., Mulet, C., Dauga, C., Frangeul, L., Chervaux, C., Grompone, G., Sansonetti, P.J., A crypt-specific core microbiota resides in the mouse colon. MBio, 3, 2012, 3.
-
(2012)
MBio
, vol.3
, pp. 3
-
-
Pédron, T.1
Mulet, C.2
Dauga, C.3
Frangeul, L.4
Chervaux, C.5
Grompone, G.6
Sansonetti, P.J.7
-
71
-
-
84902578841
-
The mucus and mucins of the goblet cells and enterocytes provide the first defense line of the gastrointestinal tract and interact with the immune system
-
Pelaseyed, T., Bergström, J.H., Gustafsson, J.K., Ermund, A., Birchenough, G.M., Schütte, A., van der Post, S., Svensson, F., Rodríguez-Piñeiro, A.M., Nyström, E.E., et al. The mucus and mucins of the goblet cells and enterocytes provide the first defense line of the gastrointestinal tract and interact with the immune system. Immunol. Rev. 260 (2014), 8–20.
-
(2014)
Immunol. Rev.
, vol.260
, pp. 8-20
-
-
Pelaseyed, T.1
Bergström, J.H.2
Gustafsson, J.K.3
Ermund, A.4
Birchenough, G.M.5
Schütte, A.6
van der Post, S.7
Svensson, F.8
Rodríguez-Piñeiro, A.M.9
Nyström, E.E.10
-
72
-
-
78149283854
-
Mucolytic bacteria with increased prevalence in IBD mucosa augment in vitro utilization of mucin by other bacteria
-
Png, C.W., Lindén, S.K., Gilshenan, K.S., Zoetendal, E.G., McSweeney, C.S., Sly, L.I., McGuckin, M.A., Florin, T.H.J., Mucolytic bacteria with increased prevalence in IBD mucosa augment in vitro utilization of mucin by other bacteria. Am. J. Gastroenterol. 105 (2010), 2420–2428.
-
(2010)
Am. J. Gastroenterol.
, vol.105
, pp. 2420-2428
-
-
Png, C.W.1
Lindén, S.K.2
Gilshenan, K.S.3
Zoetendal, E.G.4
McSweeney, C.S.5
Sly, L.I.6
McGuckin, M.A.7
Florin, T.H.J.8
-
73
-
-
84868535694
-
Molecular analysis of model gut microbiotas by imaging mass spectrometry and nanodesorption electrospray ionization reveals dietary metabolite transformations
-
Rath, C.M., Alexandrov, T., Higginbottom, S.K., Song, J., Milla, M.E., Fischbach, M.A., Sonnenburg, J.L., Dorrestein, P.C., Molecular analysis of model gut microbiotas by imaging mass spectrometry and nanodesorption electrospray ionization reveals dietary metabolite transformations. Anal. Chem. 84 (2012), 9259–9267.
-
(2012)
Anal. Chem.
, vol.84
, pp. 9259-9267
-
-
Rath, C.M.1
Alexandrov, T.2
Higginbottom, S.K.3
Song, J.4
Milla, M.E.5
Fischbach, M.A.6
Sonnenburg, J.L.7
Dorrestein, P.C.8
-
74
-
-
84875174138
-
Surgical implantation of an abdominal imaging window for intravital microscopy
-
Ritsma, L., Steller, E.J.A., Ellenbroek, S.I.J., Kranenburg, O., Borel Rinkes, I.H.M., van Rheenen, J., Surgical implantation of an abdominal imaging window for intravital microscopy. Nat. Protoc. 8 (2013), 583–594.
-
(2013)
Nat. Protoc.
, vol.8
, pp. 583-594
-
-
Ritsma, L.1
Steller, E.J.A.2
Ellenbroek, S.I.J.3
Kranenburg, O.4
Borel Rinkes, I.H.M.5
van Rheenen, J.6
-
75
-
-
84914094986
-
Secretory IgA is Concentrated in the Outer Layer of Colonic Mucus along with Gut Bacteria
-
Rogier, E.W., Frantz, A.L., Bruno, M.E., Kaetzel, C.S., Secretory IgA is Concentrated in the Outer Layer of Colonic Mucus along with Gut Bacteria. Pathogens 3 (2014), 390–403.
-
(2014)
Pathogens
, vol.3
, pp. 390-403
-
-
Rogier, E.W.1
Frantz, A.L.2
Bruno, M.E.3
Kaetzel, C.S.4
-
76
-
-
74049122536
-
Enteric defensins are essential regulators of intestinal microbial ecology
-
Salzman, N.H., Hung, K., Haribhai, D., Chu, H., Karlsson-Sjöberg, J., Amir, E., Teggatz, P., Barman, M., Hayward, M., Eastwood, D., et al. Enteric defensins are essential regulators of intestinal microbial ecology. Nat. Immunol. 11 (2010), 76–83.
-
(2010)
Nat. Immunol.
, vol.11
, pp. 76-83
-
-
Salzman, N.H.1
Hung, K.2
Haribhai, D.3
Chu, H.4
Karlsson-Sjöberg, J.5
Amir, E.6
Teggatz, P.7
Barman, M.8
Hayward, M.9
Eastwood, D.10
-
77
-
-
0016169679
-
Surface-surface associations in microbial communities populating epithelial habitats in the murine gastrointestinal ecosystem: scanning electron microscopy
-
Savage, D.C., Blumershine, R.V., Surface-surface associations in microbial communities populating epithelial habitats in the murine gastrointestinal ecosystem: scanning electron microscopy. Infect. Immun. 10 (1974), 240–250.
-
(1974)
Infect. Immun.
, vol.10
, pp. 240-250
-
-
Savage, D.C.1
Blumershine, R.V.2
-
78
-
-
0014233150
-
The gastrointestinal epithelium and its autochthonous bacterial flora
-
Savage, D.C., Dubos, R., Schaedler, R.W., The gastrointestinal epithelium and its autochthonous bacterial flora. J. Exp. Med. 127 (1968), 67–76.
-
(1968)
J. Exp. Med.
, vol.127
, pp. 67-76
-
-
Savage, D.C.1
Dubos, R.2
Schaedler, R.W.3
-
79
-
-
0015140524
-
Anaerobic bacteria on the mucosal epithelium of the murine large bowel
-
Savage, D.C., McAllister, J.S., Davis, C.P., Anaerobic bacteria on the mucosal epithelium of the murine large bowel. Infect. Immun. 4 (1971), 492–502.
-
(1971)
Infect. Immun.
, vol.4
, pp. 492-502
-
-
Savage, D.C.1
McAllister, J.S.2
Davis, C.P.3
-
80
-
-
84945359684
-
Disease tolerance mediated by microbiome E. coli involves inflammasome and IGF-1 signaling
-
Schieber, A.M., Lee, Y.M., Chang, M.W., Leblanc, M., Collins, B., Downes, M., Evans, R.M., Ayres, J.S., Disease tolerance mediated by microbiome E. coli involves inflammasome and IGF-1 signaling. Science 350 (2015), 558–563.
-
(2015)
Science
, vol.350
, pp. 558-563
-
-
Schieber, A.M.1
Lee, Y.M.2
Chang, M.W.3
Leblanc, M.4
Collins, B.5
Downes, M.6
Evans, R.M.7
Ayres, J.S.8
-
81
-
-
84926360580
-
Growth and host interaction of mouse segmented filamentous bacteria in vitro
-
Schnupf, P., Gaboriau-Routhiau, V., Gros, M., Friedman, R., Moya-Nilges, M., Nigro, G., Cerf-Bensussan, N., Sansonetti, P.J., Growth and host interaction of mouse segmented filamentous bacteria in vitro. Nature 520 (2015), 99–103.
-
(2015)
Nature
, vol.520
, pp. 99-103
-
-
Schnupf, P.1
Gaboriau-Routhiau, V.2
Gros, M.3
Friedman, R.4
Moya-Nilges, M.5
Nigro, G.6
Cerf-Bensussan, N.7
Sansonetti, P.J.8
-
82
-
-
84916884469
-
Bacteria from diverse habitats colonize and compete in the mouse gut
-
Seedorf, H., Griffin, N.W., Ridaura, V.K., Reyes, A., Cheng, J., Rey, F.E., Smith, M.I., Simon, G.M., Scheffrahn, R.H., Woebken, D., et al. Bacteria from diverse habitats colonize and compete in the mouse gut. Cell 159 (2014), 253–266.
-
(2014)
Cell
, vol.159
, pp. 253-266
-
-
Seedorf, H.1
Griffin, N.W.2
Ridaura, V.K.3
Reyes, A.4
Cheng, J.5
Rey, F.E.6
Smith, M.I.7
Simon, G.M.8
Scheffrahn, R.H.9
Woebken, D.10
-
83
-
-
0033027522
-
Fluorescence in situ hybridization using 16S rRNA-targeted oligonucleotides reveals localization of methanogens and selected uncultured bacteria in mesophilic and thermophilic sludge granules
-
Sekiguchi, Y., Kamagata, Y., Nakamura, K., Ohashi, A., Harada, H., Fluorescence in situ hybridization using 16S rRNA-targeted oligonucleotides reveals localization of methanogens and selected uncultured bacteria in mesophilic and thermophilic sludge granules. Appl. Environ. Microbiol. 65 (1999), 1280–1288.
-
(1999)
Appl. Environ. Microbiol.
, vol.65
, pp. 1280-1288
-
-
Sekiguchi, Y.1
Kamagata, Y.2
Nakamura, K.3
Ohashi, A.4
Harada, H.5
-
84
-
-
84929211886
-
Helicobacter pylori Activates and Expands Lgr5(+) Stem Cells Through Direct Colonization of the Gastric Glands
-
1392–404.e21
-
Sigal, M., Rothenberg, M.E., Logan, C.Y., Lee, J.Y., Honaker, R.W., Cooper, R.L., Passarelli, B., Camorlinga, M., Bouley, D.M., Alvarez, G., et al. Helicobacter pylori Activates and Expands Lgr5(+) Stem Cells Through Direct Colonization of the Gastric Glands. Gastroenterology, 148, 2015 1392–404.e21.
-
(2015)
Gastroenterology
, vol.148
-
-
Sigal, M.1
Rothenberg, M.E.2
Logan, C.Y.3
Lee, J.Y.4
Honaker, R.W.5
Cooper, R.L.6
Passarelli, B.7
Camorlinga, M.8
Bouley, D.M.9
Alvarez, G.10
-
85
-
-
84861989207
-
Innate lymphoid cells promote anatomical containment of lymphoid-resident commensal bacteria
-
Sonnenberg, G.F., Monticelli, L.A., Alenghat, T., Fung, T.C., Hutnick, N.A., Kunisawa, J., Shibata, N., Grunberg, S., Sinha, R., Zahm, A.M., et al. Innate lymphoid cells promote anatomical containment of lymphoid-resident commensal bacteria. Science 336 (2012), 1321–1325.
-
(2012)
Science
, vol.336
, pp. 1321-1325
-
-
Sonnenberg, G.F.1
Monticelli, L.A.2
Alenghat, T.3
Fung, T.C.4
Hutnick, N.A.5
Kunisawa, J.6
Shibata, N.7
Grunberg, S.8
Sinha, R.9
Zahm, A.M.10
-
86
-
-
79952748287
-
Unravelling the effects of the environment and host genotype on the gut microbiome
-
Spor, A., Koren, O., Ley, R., Unravelling the effects of the environment and host genotype on the gut microbiome. Nat. Rev. Microbiol. 9 (2011), 279–290.
-
(2011)
Nat. Rev. Microbiol.
, vol.9
, pp. 279-290
-
-
Spor, A.1
Koren, O.2
Ley, R.3
-
87
-
-
14844351844
-
Spatial organization of bacterial flora in normal and inflamed intestine: a fluorescence in situ hybridization study in mice
-
Swidsinski, A., Loening-Baucke, V., Lochs, H., Hale, L.P., Spatial organization of bacterial flora in normal and inflamed intestine: a fluorescence in situ hybridization study in mice. World J. Gastroenterol. 11 (2005), 1131–1140.
-
(2005)
World J. Gastroenterol.
, vol.11
, pp. 1131-1140
-
-
Swidsinski, A.1
Loening-Baucke, V.2
Lochs, H.3
Hale, L.P.4
-
88
-
-
22144476548
-
Spatial organization and composition of the mucosal flora in patients with inflammatory bowel disease
-
Swidsinski, A., Weber, J., Loening-Baucke, V., Hale, L.P., Lochs, H., Spatial organization and composition of the mucosal flora in patients with inflammatory bowel disease. J. Clin. Microbiol. 43 (2005), 3380–3389.
-
(2005)
J. Clin. Microbiol.
, vol.43
, pp. 3380-3389
-
-
Swidsinski, A.1
Weber, J.2
Loening-Baucke, V.3
Hale, L.P.4
Lochs, H.5
-
89
-
-
34047167850
-
Comparative study of the intestinal mucus barrier in normal and inflamed colon
-
Swidsinski, A., Loening-Baucke, V., Theissig, F., Engelhardt, H., Bengmark, S., Koch, S., Lochs, H., Dörffel, Y., Comparative study of the intestinal mucus barrier in normal and inflamed colon. Gut 56 (2007), 343–350.
-
(2007)
Gut
, vol.56
, pp. 343-350
-
-
Swidsinski, A.1
Loening-Baucke, V.2
Theissig, F.3
Engelhardt, H.4
Bengmark, S.5
Koch, S.6
Lochs, H.7
Dörffel, Y.8
-
90
-
-
34548176784
-
Viscosity gradient within the mucus layer determines the mucosal barrier function and the spatial organization of the intestinal microbiota
-
Swidsinski, A., Sydora, B.C., Doerffel, Y., Loening-Baucke, V., Vaneechoutte, M., Lupicki, M., Scholze, J., Lochs, H., Dieleman, L.A., Viscosity gradient within the mucus layer determines the mucosal barrier function and the spatial organization of the intestinal microbiota. Inflamm. Bowel Dis. 13 (2007), 963–970.
-
(2007)
Inflamm. Bowel Dis.
, vol.13
, pp. 963-970
-
-
Swidsinski, A.1
Sydora, B.C.2
Doerffel, Y.3
Loening-Baucke, V.4
Vaneechoutte, M.5
Lupicki, M.6
Scholze, J.7
Lochs, H.8
Dieleman, L.A.9
-
91
-
-
48549097837
-
Biostructure of fecal microbiota in healthy subjects and patients with chronic idiopathic diarrhea
-
Swidsinski, A., Loening-Baucke, V., Verstraelen, H., Osowska, S., Doerffel, Y., Biostructure of fecal microbiota in healthy subjects and patients with chronic idiopathic diarrhea. Gastroenterology 135 (2008), 568–579.
-
(2008)
Gastroenterology
, vol.135
, pp. 568-579
-
-
Swidsinski, A.1
Loening-Baucke, V.2
Verstraelen, H.3
Osowska, S.4
Doerffel, Y.5
-
92
-
-
77954492495
-
Mucosal flora in Crohn's disease and ulcerative colitis - an overview
-
Swidsinski, A., Loening-Baucke, V., Herber, A., Mucosal flora in Crohn's disease and ulcerative colitis - an overview. J. Physiol. Pharmacol. 60 (2009), 61–71.
-
(2009)
J. Physiol. Pharmacol.
, vol.60
, pp. 61-71
-
-
Swidsinski, A.1
Loening-Baucke, V.2
Herber, A.3
-
93
-
-
0023394498
-
Demonstration of mucosa-associated microbial populations in the colons of mice
-
Tannock, G.W., Demonstration of mucosa-associated microbial populations in the colons of mice. Appl. Environ. Microbiol. 53 (1987), 1965–1968.
-
(1987)
Appl. Environ. Microbiol.
, vol.53
, pp. 1965-1968
-
-
Tannock, G.W.1
-
94
-
-
85000363137
-
Microbiota Diurnal Rhythmicity Programs Host Transcriptome Oscillations
-
Thaiss, C.A., Levy, M., Korem, T., Dohnalová, L., Shapiro, H., Jaitin, D.A., David, E., Winter, D.R., Gury-BenAri, M., Tatirovsky, E., et al. Microbiota Diurnal Rhythmicity Programs Host Transcriptome Oscillations. Cell 167 (2016), 1495–1510.
-
(2016)
Cell
, vol.167
, pp. 1495-1510
-
-
Thaiss, C.A.1
Levy, M.2
Korem, T.3
Dohnalová, L.4
Shapiro, H.5
Jaitin, D.A.6
David, E.7
Winter, D.R.8
Gury-BenAri, M.9
Tatirovsky, E.10
-
95
-
-
84882544287
-
12 - Lower Gastrointestinal Tract. In Comparative Anatomy and Histology
-
Academic Press San Diego, CA
-
Treuting, P.M., Dintzis, S.M., 12 - Lower Gastrointestinal Tract. In Comparative Anatomy and Histology. 2012, Academic Press, San Diego, CA, 177–192, 10.1016/B978-0-12-381361-9.00012-3.
-
(2012)
, pp. 177-192
-
-
Treuting, P.M.1
Dintzis, S.M.2
-
96
-
-
77950669604
-
The effect of diet on the human gut microbiome: a metagenomic analysis in humanized gnotobiotic mice
-
Turnbaugh, P.J., Ridaura, V.K., Faith, J.J., Rey, F.E., Knight, R., Gordon, J.I., The effect of diet on the human gut microbiome: a metagenomic analysis in humanized gnotobiotic mice. Sci. Transl. Med., 1, 2009, 6ra14.
-
(2009)
Sci. Transl. Med.
, vol.1
, pp. 6ra14
-
-
Turnbaugh, P.J.1
Ridaura, V.K.2
Faith, J.J.3
Rey, F.E.4
Knight, R.5
Gordon, J.I.6
-
97
-
-
84901296354
-
The mycobiota: interactions between commensal fungi and the host immune system
-
Underhill, D.M., Iliev, I.D., The mycobiota: interactions between commensal fungi and the host immune system. Nat. Rev. Immunol. 14 (2014), 405–416.
-
(2014)
Nat. Rev. Immunol.
, vol.14
, pp. 405-416
-
-
Underhill, D.M.1
Iliev, I.D.2
-
98
-
-
80054122238
-
The antibacterial lectin RegIIIgamma promotes the spatial segregation of microbiota and host in the intestine
-
Vaishnava, S., Yamamoto, M., Severson, K.M., Ruhn, K.A., Yu, X., Koren, O., Ley, R., Wakeland, E.K., Hooper, L.V., The antibacterial lectin RegIIIgamma promotes the spatial segregation of microbiota and host in the intestine. Science 334 (2011), 255–258.
-
(2011)
Science
, vol.334
, pp. 255-258
-
-
Vaishnava, S.1
Yamamoto, M.2
Severson, K.M.3
Ruhn, K.A.4
Yu, X.5
Koren, O.6
Ley, R.7
Wakeland, E.K.8
Hooper, L.V.9
-
99
-
-
79952769971
-
Systems-level analysis of microbial community organization through combinatorial labeling and spectral imaging
-
Valm, A.M., Mark Welch, J.L., Rieken, C.W., Hasegawa, Y., Sogin, M.L., Oldenbourg, R., Dewhirst, F.E., Borisy, G.G., Systems-level analysis of microbial community organization through combinatorial labeling and spectral imaging. Proc. Natl. Acad. Sci. USA 108 (2011), 4152–4157.
-
(2011)
Proc. Natl. Acad. Sci. USA
, vol.108
, pp. 4152-4157
-
-
Valm, A.M.1
Mark Welch, J.L.2
Rieken, C.W.3
Hasegawa, Y.4
Sogin, M.L.5
Oldenbourg, R.6
Dewhirst, F.E.7
Borisy, G.G.8
-
100
-
-
84999836246
-
Deep Learning Automates the Quantitative Analysis of Individual Cells in Live-Cell Imaging Experiments
-
Van Valen, D.A., Kudo, T., Lane, K.M., Macklin, D.N., Quach, N.T., DeFelice, M.M., Maayan, I., Tanouchi, Y., Ashley, E.A., Covert, M.W., Deep Learning Automates the Quantitative Analysis of Individual Cells in Live-Cell Imaging Experiments. PLoS Comput. Biol., 12, 2016, e1005177.
-
(2016)
PLoS Comput. Biol.
, vol.12
, pp. e1005177
-
-
Van Valen, D.A.1
Kudo, T.2
Lane, K.M.3
Macklin, D.N.4
Quach, N.T.5
DeFelice, M.M.6
Maayan, I.7
Tanouchi, Y.8
Ashley, E.A.9
Covert, M.W.10
-
101
-
-
84897127283
-
The virome in mammalian physiology and disease
-
Virgin, H.W., The virome in mammalian physiology and disease. Cell 157 (2014), 142–150.
-
(2014)
Cell
, vol.157
, pp. 142-150
-
-
Virgin, H.W.1
-
102
-
-
0038265129
-
Fluorescence in situ hybridisation for the identification and characterisation of prokaryotes
-
Wagner, M., Horn, M., Daims, H., Fluorescence in situ hybridisation for the identification and characterisation of prokaryotes. Curr. Opin. Microbiol. 6 (2003), 302–309.
-
(2003)
Curr. Opin. Microbiol.
, vol.6
, pp. 302-309
-
-
Wagner, M.1
Horn, M.2
Daims, H.3
-
103
-
-
24944540682
-
Comparison of bacterial diversity along the human intestinal tract by direct cloning and sequencing of 16S rRNA genes
-
Wang, M., Ahrné, S., Jeppsson, B., Molin, G., Comparison of bacterial diversity along the human intestinal tract by direct cloning and sequencing of 16S rRNA genes. FEMS Microbiol. Ecol. 54 (2005), 219–231.
-
(2005)
FEMS Microbiol. Ecol.
, vol.54
, pp. 219-231
-
-
Wang, M.1
Ahrné, S.2
Jeppsson, B.3
Molin, G.4
-
104
-
-
84982786965
-
Host Gut Motility Promotes Competitive Exclusion within a Model Intestinal Microbiota
-
Wiles, T.J., Jemielita, M., Baker, R.P., Schlomann, B.H., Logan, S.L., Ganz, J., Melancon, E., Eisen, J.S., Guillemin, K., Parthasarathy, R., Host Gut Motility Promotes Competitive Exclusion within a Model Intestinal Microbiota. PLoS Biol., 14, 2016, e1002517.
-
(2016)
PLoS Biol.
, vol.14
, pp. e1002517
-
-
Wiles, T.J.1
Jemielita, M.2
Baker, R.P.3
Schlomann, B.H.4
Logan, S.L.5
Ganz, J.6
Melancon, E.7
Eisen, J.S.8
Guillemin, K.9
Parthasarathy, R.10
-
105
-
-
84926248729
-
Biogeography of the intestinal mucosal and lumenal microbiome in the rhesus macaque
-
Yasuda, K., Oh, K., Ren, B., Tickle, T.L., Franzosa, E.A., Wachtman, L.M., Miller, A.D., Westmoreland, S.V., Mansfield, K.G., Vallender, E.J., et al. Biogeography of the intestinal mucosal and lumenal microbiome in the rhesus macaque. Cell Host Microbe 17 (2015), 385–391.
-
(2015)
Cell Host Microbe
, vol.17
, pp. 385-391
-
-
Yasuda, K.1
Oh, K.2
Ren, B.3
Tickle, T.L.4
Franzosa, E.A.5
Wachtman, L.M.6
Miller, A.D.7
Westmoreland, S.V.8
Mansfield, K.G.9
Vallender, E.J.10
-
106
-
-
84876337823
-
Comparative analysis of the distribution of segmented filamentous bacteria in humans, mice and chickens
-
Yin, Y., Wang, Y., Zhu, L., Liu, W., Liao, N., Jiang, M., Zhu, B., Yu, H.D., Xiang, C., Wang, X., Comparative analysis of the distribution of segmented filamentous bacteria in humans, mice and chickens. ISME J. 7 (2013), 615–621.
-
(2013)
ISME J.
, vol.7
, pp. 615-621
-
-
Yin, Y.1
Wang, Y.2
Zhu, L.3
Liu, W.4
Liao, N.5
Jiang, M.6
Zhu, B.7
Yu, H.D.8
Xiang, C.9
Wang, X.10
|