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Volumn 1, Issue 7, 2016, Pages

MicrobeJ, a tool for high throughput bacterial cell detection and quantitative analysis

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHM; BACTERIUM; CHEMISTRY; CYTOLOGY; DEVICES; FLUORESCENCE MICROSCOPY; HIGH THROUGHPUT SCREENING; HUMAN; IMAGE PROCESSING; ISOLATION AND PURIFICATION; MICROBIOLOGICAL EXAMINATION; PROCEDURES; PROTEIN TRANSPORT; SINGLE CELL ANALYSIS; SOFTWARE; ULTRASTRUCTURE;

EID: 84987921775     PISSN: None     EISSN: 20585276     Source Type: Journal    
DOI: 10.1038/nmicrobiol.2016.77     Document Type: Article
Times cited : (624)

References (18)
  • 2
    • 84936993818 scopus 로고    scopus 로고
    • Cell age dependent concentration of Escherichia coli divisome proteins analyzed with ImageJ and ObjectJ
    • Vischer, N. O. E. et al. Cell age dependent concentration of Escherichia coli divisome proteins analyzed with ImageJ and ObjectJ. Front. Microbiol. 6, 586 (2015).
    • (2015) Front. Microbiol , vol.6 , pp. 586
    • Vischer, N.O.E.1
  • 3
    • 0034971914 scopus 로고    scopus 로고
    • CMEIAS: A computeraided system for the image analysis of bacterial morphotypes in microbial communities
    • Liu, J., Dazzo, F. B., Glagoleva, O., Yu, B. & Jain, A. K. CMEIAS: a computeraided system for the image analysis of bacterial morphotypes in microbial communities. Microb. Ecol. 41, 173-194 (2001).
    • (2001) Microb. Ecol , vol.41 , pp. 173-194
    • Liu, J.1    Dazzo, F.B.2    Glagoleva, O.3    Yu, B.4    Jain, A.K.5
  • 4
    • 84904520235 scopus 로고    scopus 로고
    • BactImAS: A platform for processing and analysis of bacterial time-lapse microscopy movies
    • Mekterović, I., Mekterović, D. & Maglica, Z. BactImAS: a platform for processing and analysis of bacterial time-lapse microscopy movies. BMC Bioinformatics 15, 251 (2014).
    • (2014) BMC Bioinformatics , vol.15 , pp. 251
    • Mekterović, I.1    Mekterović, D.2    Maglica, Z.3
  • 5
    • 77949527973 scopus 로고    scopus 로고
    • High-throughput identification of protein localization dependency networks
    • Christen, B. et al. High-throughput identification of protein localization dependency networks. Proc. Natl Acad. Sci. USA 107, 4681-4686 (2010).
    • (2010) Proc. Natl Acad. Sci. USA , vol.107 , pp. 4681-4686
    • Christen, B.1
  • 6
    • 79955024764 scopus 로고    scopus 로고
    • High-throughput subpixel precision analysis of bacterial morphogenesis and intracellular spatio-temporal dynamics
    • Sliusarenko, O., Heinritz, J., Emonet, T. & Jacobs-Wagner, C. High-throughput, subpixel precision analysis of bacterial morphogenesis and intracellular spatio-temporal dynamics. Mol. Microbiol. 80, 612-627 (2011).
    • (2011) Mol. Microbiol , vol.80 , pp. 612-627
    • Sliusarenko, O.1    Heinritz, J.2    Emonet, T.3    Jacobs-Wagner, C.4
  • 7
    • 84862520770 scopus 로고    scopus 로고
    • Fiji: An open-source platform for biological-image analysis
    • Schindelin, J. et al. Fiji: an open-source platform for biological-image analysis. Nature Methods 9, 676-682 (2012).
    • (2012) Nature Methods , vol.9 , pp. 676-682
    • Schindelin, J.1
  • 8
    • 84958061161 scopus 로고    scopus 로고
    • Oufti: An integrated software package for high-accuracy, high-throughput quantitative microscopy analysis
    • Paintdakhi, A. et al. Oufti: an integrated software package for high-accuracy, high-throughput quantitative microscopy analysis. Mol. Microbiol. 99, 767-777 (2016).
    • (2016) Mol. Microbiol , vol.99 , pp. 767-777
    • Paintdakhi, A.1
  • 9
    • 57149086650 scopus 로고    scopus 로고
    • PSICIC: Noise and asymmetry in bacterial division revealed by computational image analysis at sub-pixel resolution
    • Guberman, J. M., Fay, A., Dworkin, J., Wingreen, N. S. & Gitai, Z. PSICIC: noise and asymmetry in bacterial division revealed by computational image analysis at sub-pixel resolution. PLoS Comput. Biol. 4, e1000233 (2008).
    • (2008) PLoS Comput. Biol , vol.4
    • Guberman, J.M.1    Fay, A.2    Dworkin, J.3    Wingreen, N.S.4    Gitai, Z.5
  • 10
    • 84863191618 scopus 로고    scopus 로고
    • Icy: An open bioimage informatics platform for extended reproducible research
    • de Chaumont, F. et al. Icy: an open bioimage informatics platform for extended reproducible research. Nature Methods 9, 690-696 (2012).
    • (2012) Nature Methods , vol.9 , pp. 690-696
    • De Chaumont, F.1
  • 11
    • 84896705451 scopus 로고    scopus 로고
    • Sequential evolution of bacterial morphology by co-option of a developmental regulator
    • Jiang, C., Brown, P. J. B., Ducret, A. & Brun, Y. V. Sequential evolution of bacterial morphology by co-option of a developmental regulator. Nature 506, 489-493 (2014).
    • (2014) Nature , vol.506 , pp. 489-493
    • Jiang, C.1    Brown, P.J.B.2    Ducret, A.3    Brun, Y.V.4
  • 12
    • 84892675183 scopus 로고    scopus 로고
    • A versatile class of cell surface directional motors gives rise to gliding motility and sporulation in Myxococcus xanthus
    • Wartel, M. et al. A versatile class of cell surface directional motors gives rise to gliding motility and sporulation in Myxococcus xanthus. PLoS Biol. 11, e1001728 (2013).
    • (2013) PLoS Biol , vol.11
    • Wartel, M.1
  • 13
    • 84933056417 scopus 로고    scopus 로고
    • Dynamic subcellular localization of a respiratory complex controls bacterial respiration
    • Alberge, F. et al. Dynamic subcellular localization of a respiratory complex controls bacterial respiration. eLife 4, e05357 (2015).
    • (2015) ELife , vol.4
    • Alberge, F.1
  • 14
    • 0025888266 scopus 로고
    • Genetics of Caulobacter crescentus
    • Ely, B. Genetics of Caulobacter crescentus. Methods Enzymol. 204, 372-384 (1991).
    • (1991) Methods Enzymol , vol.204 , pp. 372-384
    • Ely, B.1
  • 15
    • 0014387090 scopus 로고
    • The promoter-operator region of the lac operon of Escherichia coli
    • Miller, J. H., Ippen, K., Scaife, J. G. & Beckwith, J. R. The promoter-operator region of the lac operon of Escherichia coli. J. Mol. Biol. 38, 413-420 (1968).
    • (1968) J. Mol. Biol , vol.38 , pp. 413-420
    • Miller, J.H.1    Ippen, K.2    Scaife, J.G.3    Beckwith, J.R.4
  • 16
    • 4444351651 scopus 로고    scopus 로고
    • Analysis of the Frz signal transduction system of Myxococcus xanthus shows the importance of the conserved C-terminal region of the cytoplasmic chemoreceptor FrzCD in sensing signals
    • Bustamante, V. H., Martínez-Flores, I., Vlamakis, H. C. & Zusman, D. R. Analysis of the Frz signal transduction system of Myxococcus xanthus shows the importance of the conserved C-terminal region of the cytoplasmic chemoreceptor FrzCD in sensing signals. Mol. Microbiol. 53, 1501-1513 (2004).
    • (2004) Mol. Microbiol , vol.53 , pp. 1501-1513
    • Bustamante, V.H.1    Martínez-Flores, I.2    Vlamakis, H.C.3    Zusman, D.R.4
  • 17
    • 33749121423 scopus 로고
    • A new culture medium for the production of antigenic streptococcal hæmolysin
    • Todd, E. W. & Hewitt, L. F. A new culture medium for the production of antigenic streptococcal hæmolysin. J. Pathol. Bacteriol. 35, 973-974 (1932).
    • (1932) J. Pathol. Bacteriol , vol.35 , pp. 973-974
    • Todd, E.W.1    Hewitt, L.F.2
  • 18
    • 0025812763 scopus 로고
    • Regulation of benzoate-CoA ligase in Rhodopseudomonas palustris
    • Kim, M.-K. & Harwood, C. S. Regulation of benzoate-CoA ligase in Rhodopseudomonas palustris. FEMS Microbiol. Lett. 83, 199-203 (1991).
    • (1991) FEMS Microbiol. Lett , vol.83 , pp. 199-203
    • Kim, M.-K.1    Harwood, C.S.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.