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Volumn 6, Issue , 2017, Pages

Discovering sparse transcription factor codes for cell states and state transitions during development

Author keywords

[No Author keywords available]

Indexed keywords

NOTCH1 RECEPTOR; OCTAMER TRANSCRIPTION FACTOR 6; TRANSCRIPTION FACTOR; TRANSCRIPTION FACTOR DACH1; TRANSCRIPTION FACTOR GATA 1; TRANSCRIPTION FACTOR GATA 2; TRANSCRIPTION FACTOR HOXA9; TRANSCRIPTION FACTOR NFATC2; TRANSCRIPTION FACTOR OTX2; TRANSCRIPTION FACTOR PAX5; TRANSCRIPTION FACTOR RUNX2; TRANSCRIPTION FACTOR SIX3; TRANSCRIPTION FACTOR SOX2; TRANSCRIPTION FACTOR SOX3; TRANSCRIPTION FACTOR SOX6; TRANSCRIPTION FACTOR SOX9; TRANSCRIPTION FACTOR TSC22D1; UNCLASSIFIED DRUG;

EID: 85015680018     PISSN: None     EISSN: 2050084X     Source Type: Journal    
DOI: 10.7554/eLife.20488     Document Type: Article
Times cited : (23)

References (161)
  • 1
    • 84876679496 scopus 로고    scopus 로고
    • Members of the high mobility group B protein family are dynamically expressed in embryonic neural stem cells
    • 23621913
    • Abraham AB, Bronstein R, Chen EI, Koller A, Ronfani L, Maletic-Savatic M, Tsirka SE. 2013. Members of the high mobility group B protein family are dynamically expressed in embryonic neural stem cells. Proteome Science 11:18. doi: 10.1186/1477-5956-11-18, PMID: 23621913
    • (2013) Proteome Science , vol.11 , pp. 18
    • Abraham, A.B.1    Bronstein, R.2    Chen, E.I.3    Koller, A.4    Ronfani, L.5    Maletic-Savatic, M.6    Tsirka, S.E.7
  • 3
    • 84992602703 scopus 로고    scopus 로고
    • Statistical mechanics of optimal convex inference in high dimensions
    • Advani M, Ganguli S. 2016. Statistical mechanics of optimal convex inference in high dimensions. Physical Review X 6:031034. doi: 10.1103/PhysRevX.6.031034
    • (2016) Physical Review X , vol.6
    • Advani, M.1    Ganguli, S.2
  • 4
    • 84857676088 scopus 로고    scopus 로고
    • Genetic and physical interaction of Meis2, Pax3 and Pax7 during dorsal midbrain development
    • 22390724
    • Agoston Z, Li N, Haslinger A, Wizenmann A, Schulte D. 2012. Genetic and physical interaction of Meis2, Pax3 and Pax7 during dorsal midbrain development. BMC Developmental Biology 12:10. doi: 10.1186/1471-213X-12-10, PMID: 22390724
    • (2012) BMC Developmental Biology , vol.12 , pp. 10
    • Agoston, Z.1    Li, N.2    Haslinger, A.3    Wizenmann, A.4    Schulte, D.5
  • 5
    • 0034624828 scopus 로고    scopus 로고
    • A clonogenic common myeloid progenitor that gives rise to all myeloid lineages
    • 10724173
    • Akashi K, Traver D, Miyamoto T, Weissman IL. 2000. A clonogenic common myeloid progenitor that gives rise to all myeloid lineages. Nature 404:193–197. doi: 10.1038/35004599, PMID: 10724173
    • (2000) Nature , vol.404 , pp. 193-197
    • Akashi, K.1    Traver, D.2    Miyamoto, T.3    Weissman, I.L.4
  • 6
    • 35949039411 scopus 로고
    • Local moments and localized states
    • Anderson PW. 1978. Local moments and localized states. Reviews of Modern Physics 50:191–201. doi: 10.1103/RevModPhys.50.191
    • (1978) Reviews of Modern Physics , vol.50 , pp. 191-201
    • Anderson, P.W.1
  • 7
    • 33750326248 scopus 로고    scopus 로고
    • Transcriptional control of midbrain dopaminergic neuron development
    • 16899537
    • Ang SL. 2006. Transcriptional control of midbrain dopaminergic neuron development. Development 133:3499– 3506. doi: 10.1242/dev.02501, PMID: 16899537
    • (2006) Development , vol.133
    • Ang, S.L.1
  • 8
    • 39349102866 scopus 로고    scopus 로고
    • Six3 controls the neural progenitor status in the murine CNS
    • 17576749
    • Appolloni I, Calzolari F, Corte G, Perris R, Malatesta P. 2008. Six3 controls the neural progenitor status in the murine CNS. Cerebral Cortex 18:553–562. doi: 10.1093/cercor/bhm092, PMID: 17576749
    • (2008) Cerebral Cortex , vol.18 , pp. 553-562
    • Appolloni, I.1    Calzolari, F.2    Corte, G.3    Perris, R.4    Malatesta, P.5
  • 9
    • 84888873871 scopus 로고    scopus 로고
    • A modular gain-of-function approach to generate cortical interneuron subtypes from ES cells
    • 24314726
    • Au E, Ahmed T, Karayannis T, Biswas S, Gan L, Fishell G. 2013. A modular gain-of-function approach to generate cortical interneuron subtypes from ES cells. Neuron 80:1145–1158. doi: 10.1016/j.neuron.2013.09.022, PMID: 24314726
    • (2013) Neuron , vol.80 , pp. 1145-1158
    • Au, E.1    Ahmed, T.2    Karayannis, T.3    Biswas, S.4    Gan, L.5    Fishell, G.6
  • 10
    • 70349483913 scopus 로고    scopus 로고
    • SOX6 controls dorsal progenitor identity and interneuron diversity during neocortical development
    • 19657336
    • Azim E, Jabaudon D, Fame RM, Macklis JD. 2009. SOX6 controls dorsal progenitor identity and interneuron diversity during neocortical development. Nature Neuroscience 12:1238–1247. doi: 10.1038/nn.2387, PMID: 19657336
    • (2009) Nature Neuroscience , vol.12 , pp. 1238-1247
    • Azim, E.1    Jabaudon, D.2    Fame, R.M.3    Macklis, J.D.4
  • 13
    • 42649112047 scopus 로고    scopus 로고
    • An embryonic stem cell-like gene expression signature in poorly differentiated aggressive human tumors
    • 18443585
    • Ben-Porath I, Thomson MW, Carey VJ, Ge R, Bell GW, Regev A, Weinberg RA. 2008. An embryonic stem cell-like gene expression signature in poorly differentiated aggressive human tumors. Nature Genetics 40:499–507. doi: 10.1038/ng.127, PMID: 18443585
    • (2008) Nature Genetics , vol.40 , pp. 499-507
    • Ben-Porath, I.1    Thomson, M.W.2    Carey, V.J.3    Ge, R.4    Bell, G.W.5    Regev, A.6    Weinberg, R.A.7
  • 14
    • 85015626781 scopus 로고
    • Controlling the false discovery rate: A practical and powerful approach to multiple testing
    • Series B
    • Benjamini Y, Hochberg Y. 1995. Controlling the false discovery rate: a practical and powerful approach to multiple testing. Journal of the Royal Statistical Society. Series B 57:289–3000.
    • (1995) Journal of the Royal Statistical Society , vol.57 , pp. 289-3000
    • Benjamini, Y.1    Hochberg, Y.2
  • 15
    • 84900819766 scopus 로고    scopus 로고
    • Sp8 and COUP-TF1 reciprocally regulate patterning and Fgf signaling in cortical progenitors
    • 23307639
    • Borello U, Madhavan M, Vilinsky I, Faedo A, Pierani A, Rubenstein J, Campbell K. 2014. Sp8 and COUP-TF1 reciprocally regulate patterning and Fgf signaling in cortical progenitors. Cerebral Cortex 24:1409–1421. doi: 10.1093/cercor/bhs412, PMID: 23307639
    • (2014) Cerebral Cortex , vol.24 , pp. 1409-1421
    • Borello, U.1    Madhavan, M.2    Vilinsky, I.3    Faedo, A.4    Pierani, A.5    Rubenstein, J.6    Campbell, K.7
  • 17
    • 0034968029 scopus 로고    scopus 로고
    • Embryonic expression of the murine homologue of SALL1, the gene mutated in Townes–Brocks syndrome
    • 11404093
    • Buck A, Kispert A, Kohlhase J. 2001. Embryonic expression of the murine homologue of SALL1, the gene mutated in Townes–Brocks syndrome. Mechanisms of Development 104:143–146. doi: 10.1016/S0925-4773(01) 00364-1, PMID: 11404093
    • (2001) Mechanisms of Development , vol.104 , pp. 143-146
    • Buck, A.1    Kispert, A.2    Kohlhase, J.3
  • 18
    • 80052717107 scopus 로고    scopus 로고
    • Tracing cells for tracking cell lineage and clonal behavior
    • 21920310
    • Buckingham ME, Meilhac SM. 2011. Tracing cells for tracking cell lineage and clonal behavior. Developmental Cell 21:394–409. doi: 10.1016/j.devcel.2011.07.019, PMID: 21920310
    • (2011) Developmental Cell , vol.21 , pp. 394-409
    • Buckingham, M.E.1    Meilhac, S.M.2
  • 21
    • 84881403268 scopus 로고    scopus 로고
    • SOX2-LIN28/let-7 pathway regulates proliferation and neurogenesis in neural precursors
    • 23884650
    • Cimadamore F, Amador-Arjona A, Chen C, Huang CT, Terskikh AV. 2013. SOX2-LIN28/let-7 pathway regulates proliferation and neurogenesis in neural precursors. PNAS 110:E3017–3026. doi: 10.1073/pnas.1220176110, PMID: 23884650
    • (2013) PNAS , vol.110 , pp. E3017-E3026
    • Cimadamore, F.1    Amador-Arjona, A.2    Chen, C.3    Huang, C.T.4    Terskikh, A.V.5
  • 23
    • 12344325677 scopus 로고    scopus 로고
    • GATA1 in normal and malignant hematopoiesis
    • 15659348
    • Crispino JD. 2005. GATA1 in normal and malignant hematopoiesis. Seminars in Cell & Developmental Biology 16:137–147. doi: 10.1016/j.semcdb.2004.11.002, PMID: 15659348
    • (2005) Seminars in Cell & Developmental Biology , vol.16 , pp. 137-147
    • Crispino, J.D.1
  • 26
    • 84962119091 scopus 로고    scopus 로고
    • Discrete distributional differential expression (D3E)–a tool for gene expression analysis of single-cell RNA-seq data
    • 26927822
    • Delmans M, Hemberg M. 2016. Discrete distributional differential expression (D3E)–a tool for gene expression analysis of single-cell RNA-seq data. BMC Bioinformatics 17:110. doi: 10.1186/s12859-016-0944-6, PMID: 26927822
    • (2016) BMC Bioinformatics , vol.17 , pp. 110
    • Delmans, M.1    Hemberg, M.2
  • 28
    • 84875666878 scopus 로고    scopus 로고
    • POU-III transcription factors (Brn1, Brn2, and Oct6) influence neurogenesis, molecular identity, and migratory destination of upper-layer cells of the cerebral cortex
    • 22892427
    • Dominguez MH, Ayoub AE, Rakic P. 2013. POU-III transcription factors (Brn1, Brn2, and Oct6) influence neurogenesis, molecular identity, and migratory destination of upper-layer cells of the cerebral cortex. Cerebral Cortex 23:2632–2643. doi: 10.1093/cercor/bhs252, PMID: 22892427
    • (2013) Cerebral Cortex , vol.23 , pp. 2632-2643
    • Dominguez, M.H.1    Ayoub, A.E.2    Rakic, P.3
  • 29
    • 73149095252 scopus 로고    scopus 로고
    • Observed universality of phase transitions in high-dimensional geometry, with implications for modern data analysis and signal processing
    • 19805445
    • Donoho D, Tanner J. 2009. Observed universality of phase transitions in high-dimensional geometry, with implications for modern data analysis and signal processing. Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences 367:4273–4293. doi: 10.1098/rsta.2009.0152, PMID: 19805445
    • (2009) Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences , vol.367 , pp. 4273-4293
    • Donoho, D.1    Tanner, J.2
  • 30
    • 84986269486 scopus 로고    scopus 로고
    • The characterization of an intestine-like genomic signature maintained during Barrett’s-associated adenocarcinogenesis reveals an NR5A2-mediated promotion of cancer cell survival
    • 27586588
    • Duggan SP, Behan FM, Kirca M, Zaheer A, McGarrigle SA, Reynolds JV, Vaz GM, Senge MO, Kelleher D. 2016. The characterization of an intestine-like genomic signature maintained during Barrett’s-associated adenocarcinogenesis reveals an NR5A2-mediated promotion of cancer cell survival. Scientific Reports 6:32638. doi: 10.1038/srep32638, PMID: 27586588
    • (2016) Scientific Reports , vol.6
    • Duggan, S.P.1    Behan, F.M.2    Kirca, M.3    Zaheer, A.4    McGarrigle, S.A.5    Reynolds, J.V.6    Vaz, G.M.7    Senge, M.O.8    Kelleher, D.9
  • 31
    • 85024382989 scopus 로고    scopus 로고
    • Foxp2 regulates identities and projection patterns of thalamic nuclei during development
    • Ebisu H, Iwai-Takekoshi L, Fujita-Jimbo E, Momoi T, Kawasaki H. 2016. Foxp2 regulates identities and projection patterns of thalamic nuclei during development. Cerebral Cortex:bhw187. doi: 10.1093/cercor/bhw187
    • (2016) Cerebral Cortex:Bhw , vol.187
    • Ebisu, H.1    Iwai-Takekoshi, L.2    Fujita-Jimbo, E.3    Momoi, T.4    Kawasaki, H.5
  • 32
    • 38949193475 scopus 로고    scopus 로고
    • Zic1 and Zic4 regulate zebrafish roof plate specification and hindbrain ventricle morphogenesis
    • 18191121
    • Elsen GE, Choi LY, Millen KJ, Grinblat Y, Prince VE. 2008. Zic1 and Zic4 regulate zebrafish roof plate specification and hindbrain ventricle morphogenesis. Developmental Biology 314:376–392. doi: 10.1016/j. ydbio.2007.12.006, PMID: 18191121
    • (2008) Developmental Biology , vol.314 , pp. 376-392
    • Elsen, G.E.1    Choi, L.Y.2    Millen, K.J.3    Grinblat, Y.4    Prince, V.E.5
  • 34
    • 77956487180 scopus 로고    scopus 로고
    • Meis1 specifies positional information in the retina and tectum to organize the zebrafish visual system
    • 20809932
    • Erickson T, French CR, Waskiewicz AJ. 2010. Meis1 specifies positional information in the retina and tectum to organize the zebrafish visual system. Neural Development 5:22. doi: 10.1186/1749-8104-5-22, PMID: 20809932
    • (2010) Neural Development , vol.5 , pp. 22
    • Erickson, T.1    French, C.R.2    Waskiewicz, A.J.3
  • 35
    • 0345096623 scopus 로고    scopus 로고
    • Embryonic expression of xenopus laevis SOX7
    • Fawcett SR, Klymkowsky MW. 2004. Embryonic expression of xenopus laevis SOX7. Gene Expression Patterns 4: 29–33. doi: 10.1016/j.modgep.2003.08.003
    • (2004) Gene Expression Patterns , vol.4 , pp. 29-33
    • Fawcett, S.R.1    Klymkowsky, M.W.2
  • 36
    • 84861865440 scopus 로고    scopus 로고
    • Bistability, bifurcations, and Waddington’s epigenetic landscape
    • 22677291
    • Ferrell JE. 2012. Bistability, bifurcations, and Waddington’s epigenetic landscape. Current Biology 22:R458– R466. doi: 10.1016/j.cub.2012.03.045, PMID: 22677291
    • (2012) Current Biology , vol.22
    • Ferrell, J.E.1
  • 37
    • 20544447734 scopus 로고    scopus 로고
    • Notch signals control the fate of immature progenitor cells in the intestine
    • 15959516
    • Fre S, Huyghe M, Mourikis P, Robine S, Louvard D, Artavanis-Tsakonas S. 2005. Notch signals control the fate of immature progenitor cells in the intestine. Nature 435:964–968. doi: 10.1038/nature03589, PMID: 15959516
    • (2005) Nature , vol.435 , pp. 964-968
    • Fre, S.1    Huyghe, M.2    Mourikis, P.3    Robine, S.4    Louvard, D.5    Artavanis-Tsakonas, S.6
  • 41
    • 84883894867 scopus 로고    scopus 로고
    • Transcriptome analysis identifies regulators of hematopoietic stem and progenitor cells
    • 24319662
    • Gazit R, Garrison BS, Rao TN, Shay T, Costello J, Ericson J, Kim F, Collins JJ, Regev A, Wagers AJ, Rossi DJ, Immunological Genome Project Consortium. 2013. Transcriptome analysis identifies regulators of hematopoietic stem and progenitor cells. Stem Cell Reports 1:266–280. doi: 10.1016/j.stemcr.2013.07.004, PMID: 24319662
    • (2013) Stem Cell Reports , vol.1 , pp. 266-280
    • Gazitgarrisonraoshaycostelloericsonkimcollinsregevwagersrossi, R.1
  • 44
    • 71449125977 scopus 로고    scopus 로고
    • Forcing cells to change lineages
    • 19956253
    • Graf T, Enver T. 2009. Forcing cells to change lineages. Nature 462:587–594. doi: 10.1038/nature08533, PMID: 1 9956253
    • (2009) Nature , vol.462 , pp. 587-594
    • Graf, T.1    Enver, T.2
  • 45
    • 84886090910 scopus 로고    scopus 로고
    • Molecular logic of neocortical projection neuron specification, development and diversity
    • 24105342
    • Greig LC, Woodworth MB, Galazo MJ, Padmanabhan H, Macklis JD. 2013. Molecular logic of neocortical projection neuron specification, development and diversity. Nature Reviews Neuroscience 14:755–769. doi: 10. 1038/nrn3586, PMID: 24105342
    • (2013) Nature Reviews Neuroscience , vol.14 , pp. 755-769
    • Greig, L.C.1    Woodworth, M.B.2    Galazo, M.J.3    Padmanabhan, H.4    Macklis, J.D.5
  • 49
    • 84915793514 scopus 로고    scopus 로고
    • Sox2 acts in a dose-dependent fashion to regulate proliferation of cortical progenitors
    • 25482558
    • Hagey DW, Muhr J. 2014. Sox2 acts in a dose-dependent fashion to regulate proliferation of cortical progenitors. Cell Reports 9:1908–1920. doi: 10.1016/j.celrep.2014.11.013, PMID: 25482558
    • (2014) Cell Reports , vol.9 , pp. 1908-1920
    • Hagey, D.W.1    Muhr, J.2
  • 50
    • 84878867659 scopus 로고    scopus 로고
    • Midbrain dopaminergic neurons: A review of the molecular circuitry that regulates their development
    • 23603197
    • Hegarty SV, Sullivan AM, O’Keeffe GW. 2013. Midbrain dopaminergic neurons: a review of the molecular circuitry that regulates their development. Developmental Biology 379:123–138. doi: 10.1016/j.ydbio.2013.04. 014, PMID: 23603197
    • (2013) Developmental Biology , vol.379 , pp. 123-138
    • Hegarty, S.V.1    Sullivan, A.M.2    O’Keeffe, G.W.3
  • 51
    • 52649097448 scopus 로고    scopus 로고
    • The immunological genome project: Networks of gene expression in immune cells
    • 18800157
    • Heng TS, Painter MW, Immunological Genome Project Consortium. 2008. The immunological genome project: networks of gene expression in immune cells. Nature Immunology 9:1091–1094. doi: 10.1038/ni1008-1091, PMID: 18800157
    • (2008) Nature Immunology , vol.9 , pp. 1091-1094
    • Hengpainter1
  • 52
    • 79952186735 scopus 로고    scopus 로고
    • SOX2 expression levels distinguish between neural progenitor populations of the developing dorsal telencephalon
    • 21256837
    • Hutton SR, Pevny LH. 2011. SOX2 expression levels distinguish between neural progenitor populations of the developing dorsal telencephalon. Developmental Biology 352:40–47. doi: 10.1016/j.ydbio.2011.01.015, PMID: 21256837
    • (2011) Developmental Biology , vol.352 , pp. 40-47
    • Hutton, S.R.1    Pevny, L.H.2
  • 53
    • 84864024007 scopus 로고    scopus 로고
    • Gbx2 directly restricts Otx2 expression to forebrain and midbrain, competing with class III POU factors
    • 22566684
    • Inoue F, Kurokawa D, Takahashi M, Aizawa S. 2012. Gbx2 directly restricts Otx2 expression to forebrain and midbrain, competing with class III POU factors. Molecular and Cellular Biology 32:2618–2627. doi: 10.1128/MCB.00083-12, PMID: 22566684
    • (2012) Molecular and Cellular Biology , vol.32 , pp. 2618-2627
    • Inoue, F.1    Kurokawa, D.2    Takahashi, M.3    Aizawa, S.4
  • 54
    • 34250214880 scopus 로고    scopus 로고
    • Myeloid lineage commitment from the hematopoietic stem cell
    • 17582345
    • Iwasaki H, Akashi K. 2007. Myeloid lineage commitment from the hematopoietic stem cell. Immunity 26:726– 740. doi: 10.1016/j.immuni.2007.06.004, PMID: 17582345
    • (2007) Immunity , vol.26
    • Iwasaki, H.1    Akashi, K.2
  • 55
    • 84860171552 scopus 로고    scopus 로고
    • Rorb induces barrel-like neuronal clusters in the developing neocortex
    • 21799210
    • Jabaudon D, Shnider SJ, Tischfield DJ, Galazo MJ, Macklis JD. 2012. Rorb induces barrel-like neuronal clusters in the developing neocortex. Cerebral Cortex 22:996–1006. doi: 10.1093/cercor/bhr182, PMID: 21799210
    • (2012) Cerebral Cortex , vol.22 , pp. 996-1006
    • Jabaudon, D.1    Shnider, S.J.2    Tischfield, D.J.3    Galazo, M.J.4    Macklis, J.D.5
  • 59
    • 0037011171 scopus 로고    scopus 로고
    • Neurogenin3 is differentially required for endocrine cell fate specification in the intestinal and gastric epithelium
    • 12456641
    • Jenny M, Uhl C, Roche C, Duluc I, Guillermin V, Guillemot F, Jensen J, Kedinger M, Gradwohl G. 2002. Neurogenin3 is differentially required for endocrine cell fate specification in the intestinal and gastric epithelium. The EMBO Journal 21:6338–6347. doi: 10.1093/emboj/cdf649, PMID: 12456641
    • (2002) The EMBO Journal , vol.21 , pp. 6338-6347
    • Jenny, M.1    Uhl, C.2    Roche, C.3    Duluc, I.4    Guillermin, V.5    Guillemot, F.6    Jensen, J.7    Kedinger, M.8    Gradwohl, G.9
  • 61
    • 84982806105 scopus 로고    scopus 로고
    • TSCAN: Pseudo-time reconstruction and evaluation in single-cell RNA-seq analysis
    • 27179027
    • Ji Z, Ji H. 2016. TSCAN: Pseudo-time reconstruction and evaluation in single-cell RNA-seq analysis. Nucleic Acids Research 44:e117. doi: 10.1093/nar/gkw430, PMID: 27179027
    • (2016) Nucleic Acids Research , vol.44
    • Ji, Z.1    Ji, H.2
  • 62
    • 84873739154 scopus 로고    scopus 로고
    • The transcription factor Otx2 regulates choroid plexus development and function
    • 23364326
    • Johansson PA, Irmler M, Acampora D, Beckers J, Simeone A, Götz M. 2013. The transcription factor Otx2 regulates choroid plexus development and function. Development 140:1055–1066. doi: 10.1242/dev.090860, PMID: 23364326
    • (2013) Development , vol.140 , pp. 1055-1066
    • Johansson, P.A.1    Irmler, M.2    Acampora, D.3    Beckers, J.4    Simeone, A.5    Götz, M.6
  • 63
    • 80052616940 scopus 로고    scopus 로고
    • Hes1 regulates the number and anterior-posterior patterning of mesencephalic dopaminergic neurons at the mid/hindbrain boundary (Isthmus)
    • 21798254
    • Kameda Y, Saitoh T, Fujimura T. 2011. Hes1 regulates the number and anterior-posterior patterning of mesencephalic dopaminergic neurons at the mid/hindbrain boundary (isthmus). Developmental Biology 358: 91–101. doi: 10.1016/j.ydbio.2011.07.016, PMID: 21798254
    • (2011) Developmental Biology , vol.358 , pp. 91-101
    • Kameda, Y.1    Saitoh, T.2    Fujimura, T.3
  • 64
    • 58149373442 scopus 로고    scopus 로고
    • COUP-TFII is preferentially expressed in the caudal ganglionic eminence and is involved in the caudal migratory stream
    • 19074032
    • Kanatani S, Yozu M, Tabata H, Nakajima K. 2008. COUP-TFII is preferentially expressed in the caudal ganglionic eminence and is involved in the caudal migratory stream. Journal of Neuroscience 28:13582–13591. doi: 10. 1523/JNEUROSCI.2132-08.2008, PMID: 19074032
    • (2008) Journal of Neuroscience , vol.28 , pp. 13582-13591
    • Kanatani, S.1    Yozu, M.2    Tabata, H.3    Nakajima, K.4
  • 65
    • 0036340041 scopus 로고    scopus 로고
    • The zinc-finger transcription factor Klf4 is required for terminal differentiation of goblet cells in the colon
    • 12015290
    • Katz JP, Perreault N, Goldstein BG, Lee CS, Labosky PA, Yang VW, Kaestner KH. 2002. The zinc-finger transcription factor Klf4 is required for terminal differentiation of goblet cells in the colon. Development 129: 2619–2628. PMID: 12015290
    • (2002) Development , vol.129 , pp. 2619-2628
    • Katz, J.P.1    Perreault, N.2    Goldstein, B.G.3    Lee, C.S.4    Labosky, P.A.5    Yang, V.W.6    Kaestner, K.H.7
  • 67
    • 0035127015 scopus 로고    scopus 로고
    • Stat6 dependent goblet cell hyperplasia during intestinal nematode infection
    • 11136476
    • Khan WI, Blennerhasset P, Ma C, Matthaei KI, Collins SM. 2001. Stat6 dependent goblet cell hyperplasia during intestinal nematode infection. Parasite Immunology 23:39–42. doi: 10.1046/j.1365-3024.2001.00353.x, PMID: 11136476
    • (2001) Parasite Immunology , vol.23 , pp. 39-42
    • Khan, W.I.1    Blennerhasset, P.2    Ma, C.3    Matthaei, K.I.4    Collins, S.M.5
  • 68
    • 84880793044 scopus 로고    scopus 로고
    • Dmrta1 regulates proneural gene expression downstream of Pax6 in the mammalian telencephalon
    • 23679989
    • Kikkawa T, Obayashi T, Takahashi M, Fukuzaki-Dohi U, Numayama-Tsuruta K, Osumi N. 2013. Dmrta1 regulates proneural gene expression downstream of Pax6 in the mammalian telencephalon. Genes to Cells 18:636–649. doi: 10.1111/gtc.12061, PMID: 23679989
    • (2013) Genes to Cells , vol.18 , pp. 636-649
    • Kikkawa, T.1    Obayashi, T.2    Takahashi, M.3    Fukuzaki-Dohi, U.4    Numayama-Tsuruta, K.5    Osumi, N.6
  • 69
    • 84864474851 scopus 로고    scopus 로고
    • HMGA regulates the global chromatin state and neurogenic potential in neocortical precursor cells
    • 227 97695
    • Kishi Y, Fujii Y, Hirabayashi Y, Gotoh Y. 2012. HMGA regulates the global chromatin state and neurogenic potential in neocortical precursor cells. Nature Neuroscience 15:1127–1133. doi: 10.1038/nn.3165, PMID: 227 97695
    • (2012) Nature Neuroscience , vol.15 , pp. 1127-1133
    • Kishi, Y.1    Fujii, Y.2    Hirabayashi, Y.3    Gotoh, Y.4
  • 71
    • 0030831130 scopus 로고    scopus 로고
    • Identification of clonogenic common lymphoid progenitors in mouse bone marrow
    • 9393859
    • Kondo M, Weissman IL, Akashi K. 1997. Identification of clonogenic common lymphoid progenitors in mouse bone marrow. Cell 91:661–672. doi: 10.1016/S0092-8674(00)80453-5, PMID: 9393859
    • (1997) Cell , vol.91 , pp. 661-672
    • Kondo, M.1    Weissman, I.L.2    Akashi, K.3
  • 72
    • 59649119865 scopus 로고    scopus 로고
    • Absence of the transcription factor Nfib delays the formation of the basilar pontine and other mossy fiber nuclei
    • 19107796
    • Kumbasar A, Plachez C, Gronostajski RM, Richards LJ, Litwack ED. 2009. Absence of the transcription factor Nfib delays the formation of the basilar pontine and other mossy fiber nuclei. The Journal of Comparative Neurology 513:98–112. doi: 10.1002/cne.21943, PMID: 19107796
    • (2009) The Journal of Comparative Neurology , vol.513 , pp. 98-112
    • Kumbasar, A.1    Plachez, C.2    Gronostajski, R.M.3    Richards, L.J.4    Litwack, E.D.5
  • 73
    • 10644269279 scopus 로고    scopus 로고
    • Expression of Trps1 during mouse embryonic development
    • 14516672
    • Kunath M, Lüdecke HJ, Vortkamp A. 2002. Expression of Trps1 during mouse embryonic development. Mechanisms of Development 119 Suppl 1:S117–120. doi:10.1016/S0925-4773(03)00103-5, PMID: 14516672
    • (2002) Mechanisms of Development , vol.119 , pp. S117-S120
    • Kunath, M.1    Lüdecke, H.J.2    Vortkamp, A.3
  • 75
    • 0004056428 scopus 로고
    • Statistical Physics
    • Landau LD, Lifshitz EM. 1951. Statistical Physics. Elsevier. 5.https://books.google.com/books?id=VzgJN-XPTRsC&pgis=1
    • (1951) Elsevier , vol.5
    • Landau, L.D.1    Lifshitz, E.M.2
  • 76
    • 33846928008 scopus 로고    scopus 로고
    • Prox1 expression patterns in the developing and adult murine brain
    • 17117441
    • Lavado A, Oliver G. 2007. Prox1 expression patterns in the developing and adult murine brain. Developmental Dynamics 236:518–524. doi: 10.1002/dvdy.21024, PMID: 17117441
    • (2007) Developmental Dynamics , vol.236 , pp. 518-524
    • Lavado, A.1    Oliver, G.2
  • 77
    • 70949103733 scopus 로고    scopus 로고
    • Dynamic patterning at the pylorus: Formation of an epithelial intestine-stomach boundary in late fetal life
    • 19877272
    • Li X, Udager AM, Hu C, Qiao XT, Richards N, Gumucio DL. 2009. Dynamic patterning at the pylorus: formation of an epithelial intestine-stomach boundary in late fetal life. Developmental Dynamics 238:3205–3217. doi: 10. 1002/dvdy.22134, PMID: 19877272
    • (2009) Developmental Dynamics , vol.238 , pp. 3205-3217
    • Li, X.1    Udager, A.M.2    Hu, C.3    Qiao, X.T.4    Richards, N.5    Gumucio, D.L.6
  • 79
  • 82
    • 79952706072 scopus 로고    scopus 로고
    • The transcription factor Foxg1 regulates telencephalic progenitor proliferation cell autonomously, in part by controlling Pax6 expression levels
    • 21418559
    • Manuel MN, Martynoga B, Molinek MD, Quinn JC, Kroemmer C, Mason JO, Price DJ. 2011. The transcription factor Foxg1 regulates telencephalic progenitor proliferation cell autonomously, in part by controlling Pax6 expression levels. Neural Development 6:9. doi: 10.1186/1749-8104-6-9, PMID: 21418559
    • (2011) Neural Development , vol.6 , pp. 9
    • Manuel, M.N.1    Martynoga, B.2    Molinek, M.D.3    Quinn, J.C.4    Kroemmer, C.5    Mason, J.O.6    Price, D.J.7
  • 83
    • 84924365758 scopus 로고    scopus 로고
    • Bifurcation analysis of single-cell gene expression data reveals epigenetic landscape
    • 25512504
    • Marco E, Karp RL, Guo G, Robson P, Hart AH, Trippa L, Yuan GC. 2014. Bifurcation analysis of single-cell gene expression data reveals epigenetic landscape. PNAS 111:E5643–E5650. doi: 10.1073/pnas.1408993111, PMID: 25512504
    • (2014) PNAS , vol.111 , pp. E5643-E5650
    • Marco, E.1    Karp, R.L.2    Guo, G.3    Robson, P.4    Hart, A.H.5    Trippa, L.6    Yuan, G.C.7
  • 85
    • 0034646616 scopus 로고    scopus 로고
    • Molecular and biochemical characterization of a serine proteinase predominantly expressed in the medulla oblongata and cerebellar white matter of mouse brain
    • 10753908
    • Matsui H, Kimura A, Yamashiki N, Moriyama A, Kaya M, Yoshida I, Takagi N, Takahashi T. 2000. Molecular and biochemical characterization of a serine proteinase predominantly expressed in the medulla oblongata and cerebellar white matter of mouse brain. Journal of Biological Chemistry 275:11050–11057. doi: 10.1074/jbc. 275.15.11050, PMID: 10753908
    • (2000) Journal of Biological Chemistry , vol.275 , pp. 11050-11057
    • Matsui, H.1    Kimura, A.2    Yamashiki, N.3    Moriyama, A.4    Kaya, M.5    Yoshida, I.6    Takagi, N.7    Takahashi, T.8
  • 86
    • 85010735019 scopus 로고    scopus 로고
    • Identification of simple reaction coordinates from complex dynamics
    • McGibbon RT, Husic BE, Pande VS. 2017. Identification of simple reaction coordinates from complex dynamics. The Journal of Chemical Physics 146:044109. doi: 10.1063/1.4974306
    • (2017) The Journal of Chemical Physics , vol.146
    • McGibbon, R.T.1    Husic, B.E.2    Pande, V.S.3
  • 87
    • 84893076854 scopus 로고    scopus 로고
    • CREB3L1 is a metastasis suppressor that represses expression of genes regulating metastasis, invasion, and angiogenesis
    • 24126059
    • Mellor P, Deibert L, Calvert B, Bonham K, Carlsen SA, Anderson DH. 2013. CREB3L1 is a metastasis suppressor that represses expression of genes regulating metastasis, invasion, and angiogenesis. Molecular and Cellular Biology 33:4985–4995. doi: 10.1128/MCB.00959-13, PMID: 24126059
    • (2013) Molecular and Cellular Biology , vol.33 , pp. 4985-4995
    • Mellor, P.1    Deibert, L.2    Calvert, B.3    Bonham, K.4    Carlsen, S.A.5    Anderson, D.H.6
  • 88
    • 0035395874 scopus 로고    scopus 로고
    • Tcf3 and Lef1 regulate lineage differentiation of multipotent stem cells in skin
    • 11445543
    • Merrill BJ, Gat U, DasGupta R, Fuchs E. 2001. Tcf3 and Lef1 regulate lineage differentiation of multipotent stem cells in skin. Genes & Development 15:1688–1705. doi: 10.1101/gad.891401, PMID: 11445543
    • (2001) Genes & Development , vol.15 , pp. 1688-1705
    • Merrill, B.J.1    Gat, U.2    Dasgupta, R.3    Fuchs, E.4
  • 90
    • 80052459951 scopus 로고    scopus 로고
    • Serotonergic inputs to FoxP2 neurons of the pre-locus coeruleus and parabrachial nuclei that project to the ventral tegmental area
    • 21784133
    • Miller RL, Stein MK, Loewy AD. 2011. Serotonergic inputs to FoxP2 neurons of the pre-locus coeruleus and parabrachial nuclei that project to the ventral tegmental area. Neuroscience 193:229–240. doi: 10.1016/j. neuroscience.2011.07.008, PMID: 21784133
    • (2011) Neuroscience , vol.193 , pp. 229-240
    • Miller, R.L.1    Stein, M.K.2    Loewy, A.D.3
  • 91
    • 33846240818 scopus 로고    scopus 로고
    • Lack of hypoxia-inducible factor-1 alpha impairs midbrain neural precursor cells involving vascular endothelial growth factor signaling
    • 17215402
    • Milosevic J, Maisel M, Wegner F, Leuchtenberger J, Wenger RH, Gerlach M, Storch A, Schwarz J. 2007. Lack of hypoxia-inducible factor-1 alpha impairs midbrain neural precursor cells involving vascular endothelial growth factor signaling. Journal of Neuroscience 27:412–421. doi: 10.1523/JNEUROSCI.2482-06.2007, PMID: 17215402
    • (2007) Journal of Neuroscience , vol.27 , pp. 412-421
    • Milosevic, J.1    Maisel, M.2    Wegner, F.3    Leuchtenberger, J.4    Wenger, R.H.5    Gerlach, M.6    Storch, A.7    Schwarz, J.8
  • 92
    • 84923242836 scopus 로고    scopus 로고
    • CD41 marks the initial myelo-erythroid lineage specification in adult mouse hematopoiesis: Redefinition of murine common myeloid progenitor
    • 25446279
    • Miyawaki K, Arinobu Y, Iwasaki H, Kohno K, Tsuzuki H, Iino T, Shima T, Kikushige Y, Takenaka K, Miyamoto T, Akashi K. 2015. CD41 marks the initial myelo-erythroid lineage specification in adult mouse hematopoiesis: redefinition of murine common myeloid progenitor. Stem Cells 33:976–987. doi: 10.1002/stem.1906, PMID: 25446279
    • (2015) Stem Cells , vol.33 , pp. 976-987
    • Miyawaki, K.1    Arinobu, Y.2    Iwasaki, H.3    Kohno, K.4    Tsuzuki, H.5    Iino, T.6    Shima, T.7    Kikushige, Y.8    Takenaka, K.9    Miyamoto, T.10    Akashi, K.11
  • 93
    • 84862689222 scopus 로고    scopus 로고
    • Dynamic FoxG1 expression coordinates the integration of Multipolar pyramidal neuron precursors into the cortical plate
    • 22726835
    • Miyoshi G, Fishell G. 2012. Dynamic FoxG1 expression coordinates the integration of Multipolar pyramidal neuron precursors into the cortical plate. Neuron 74:1045–1058. doi: 10.1016/j.neuron.2012.04.025, PMID: 22726835
    • (2012) Neuron , vol.74 , pp. 1045-1058
    • Miyoshi, G.1    Fishell, G.2
  • 96
    • 72149128893 scopus 로고    scopus 로고
    • SAM pointed domain ETS factor (SPDEF) regulates terminal differentiation and maturation of intestinal goblet cells
    • 19786015
    • Noah TK, Kazanjian A, Whitsett J, Shroyer NF. 2010. SAM pointed domain ETS factor (SPDEF) regulates terminal differentiation and maturation of intestinal goblet cells. Experimental Cell Research 316:452–465. doi: 10.1016/j.yexcr.2009.09.020, PMID: 19786015
    • (2010) Experimental Cell Research , vol.316 , pp. 452-465
    • Noah, T.K.1    Kazanjian, A.2    Whitsett, J.3    Shroyer, N.F.4
  • 98
    • 0035839458 scopus 로고    scopus 로고
    • Roles of the basic helix-loop-helix genes Hes1 and Hes5 in expansion of neural stem cells of the developing brain
    • 11399758
    • Ohtsuka T, Sakamoto M, Guillemot F, Kageyama R. 2001. Roles of the basic helix-loop-helix genes Hes1 and Hes5 in expansion of neural stem cells of the developing brain. Journal of Biological Chemistry 276:30467– 30474. doi: 10.1074/jbc.M102420200, PMID: 11399758
    • (2001) Journal of Biological Chemistry , vol.276
    • Ohtsuka, T.1    Sakamoto, M.2    Guillemot, F.3    Kageyama, R.4
  • 99
    • 84868203852 scopus 로고    scopus 로고
    • Interneuron, interrupted: Molecular pathogenesis of ARX mutations and X-linked infantile spasms
    • 22565167
    • Olivetti PR, Noebels JL. 2012. Interneuron, interrupted: molecular pathogenesis of ARX mutations and X-linked infantile spasms. Current Opinion in Neurobiology 22:859–865. doi: 10.1016/j.conb.2012.04.006, PMID: 22565167
    • (2012) Current Opinion in Neurobiology , vol.22 , pp. 859-865
    • Olivetti, P.R.1    Noebels, J.L.2
  • 100
    • 39349096526 scopus 로고    scopus 로고
    • Hematopoiesis: An evolving paradigm for stem cell biology
    • 18295580
    • Orkin SH, Zon LI. 2008. Hematopoiesis: an evolving paradigm for stem cell biology. Cell 132:631–644. doi: 10. 1016/j.cell.2008.01.025, PMID: 18295580
    • (2008) Cell , vol.132 , pp. 631-644
    • Orkin, S.H.1    Zon, L.I.2
  • 103
    • 84865646610 scopus 로고    scopus 로고
    • Signaling mechanisms controlling cell fate and embryonic patterning
    • 22855721
    • Perrimon N, Pitsouli C, Shilo BZ. 2012. Signaling mechanisms controlling cell fate and embryonic patterning. Cold Spring Harbor Perspectives in Biology 4:a005975. doi: 10.1101/cshperspect.a005975, PMID: 22855721
    • (2012) Cold Spring Harbor Perspectives in Biology , vol.4
    • Perrimon, N.1    Pitsouli, C.2    Shilo, B.Z.3
  • 104
    • 84887101406 scopus 로고    scopus 로고
    • Smart-seq2 for sensitive full-length transcriptome profiling in single cells
    • 24056875
    • Picelli S, Björklund ÅK, Faridani OR, Sagasser S, Winberg G, Sandberg R. 2013. Smart-seq2 for sensitive full-length transcriptome profiling in single cells. Nature Methods 10:1096–1098. doi: 10.1038/nmeth.2639, PMID: 24056875
    • (2013) Nature Methods , pp. 1096-1098
    • Picelli, S.1    Björklund, Å.2    Faridani, O.R.3    Sagasser, S.4    Winberg, G.5    Sandberg, R.6
  • 105
    • 84894293156 scopus 로고    scopus 로고
    • FOXO3 determines the accumulation of a-synuclein and controls the fate of dopaminergic neurons in the substantia nigra
    • 24158851
    • Pino E, Amamoto R, Zheng L, Cacquevel M, Sarria JC, Knott GW, Schneider BL. 2014. FOXO3 determines the accumulation of a-synuclein and controls the fate of dopaminergic neurons in the substantia nigra. Human Molecular Genetics 23:1435–1452. doi: 10.1093/hmg/ddt530, PMID: 24158851
    • (2014) Human Molecular Genetics , vol.23 , pp. 1435-1452
    • Pino, E.1    Amamoto, R.2    Zheng, L.3    Cacquevel, M.4    Sarria, J.C.5    Knott, G.W.6    Schneider, B.L.7
  • 106
    • 78650734598 scopus 로고    scopus 로고
    • Sox10 directs neural stem cells toward the oligodendrocyte lineage by decreasing suppressor of fused expression
    • 21098272
    • Pozniak CD, Langseth AJ, Dijkgraaf GJ, Choe Y, Werb Z, Pleasure SJ. 2010. Sox10 directs neural stem cells toward the oligodendrocyte lineage by decreasing suppressor of fused expression. PNAS 107:21795–21800. doi: 10.1073/pnas.1016485107, PMID: 21098272
    • (2010) PNAS , vol.107 , pp. 21795-21800
    • Pozniak, C.D.1    Langseth, A.J.2    Dijkgraaf, G.J.3    Choe, Y.4    Werb, Z.5    Pleasure, S.J.6
  • 107
    • 84880728627 scopus 로고    scopus 로고
    • Antagonistic regulation by the transcription factors C/EBPa and MITF specifies basophil and mast cell fates
    • 23871207
    • Qi X, Hong J, Chaves L, Zhuang Y, Chen Y, Wang D, Chabon J, Graham B, Ohmori K, Li Y, Huang H. 2013. Antagonistic regulation by the transcription factors C/EBPa and MITF specifies basophil and mast cell fates. Immunity 39:97–110. doi: 10.1016/j.immuni.2013.06.012, PMID: 23871207
    • (2013) Immunity , vol.39 , pp. 97-110
    • Qi, X.1    Hong, J.2    Chaves, L.3    Zhuang, Y.4    Chen, Y.5    Wang, D.6    Chabon, J.7    Graham, B.8    Ohmori, K.9    Li, Y.10    Huang, H.11
  • 108
    • 84886527290 scopus 로고    scopus 로고
    • Reprogramming fibroblasts to neural-precursor-like cells by structured overexpression of pallial patterning genes
    • 24128663
    • Raciti M, Granzotto M, Duc MD, Fimiani C, Cellot G, Cherubini E, Mallamaci A. 2013. Reprogramming fibroblasts to neural-precursor-like cells by structured overexpression of pallial patterning genes. Molecular and Cellular Neuroscience 57:42–53. doi: 10.1016/j.mcn.2013.10.004, PMID: 24128663
    • (2013) Molecular and Cellular Neuroscience , vol.57 , pp. 42-53
    • Raciti, M.1    Granzotto, M.2    Duc, M.D.3    Fimiani, C.4    Cellot, G.5    Cherubini, E.6    Mallamaci, A.7
  • 110
    • 84869047105 scopus 로고    scopus 로고
    • COUP-TFII expressing interneurons in human fetal forebrain
    • 22178710
    • Reinchisi G, Ijichi K, Glidden N, Jakovcevski I, Zecevic N. 2012. COUP-TFII expressing interneurons in human fetal forebrain. Cerebral Cortex 22:2820–2830. doi: 10.1093/cercor/bhr359, PMID: 22178710
    • (2012) Cerebral Cortex , vol.22 , pp. 2820-2830
    • Reinchisi, G.1    Ijichi, K.2    Glidden, N.3    Jakovcevski, I.4    Zecevic, N.5
  • 111
    • 0035499267 scopus 로고    scopus 로고
    • Stem cells, cancer, and cancer stem cells
    • 11689955
    • Reya T, Morrison SJ, Clarke MF, Weissman IL. 2001. Stem cells, cancer, and cancer stem cells. Nature 414:105– 111. doi: 10.1038/35102167, PMID: 11689955
    • (2001) Nature , vol.414
    • Reya, T.1    Morrison, S.J.2    Clarke, M.F.3    Weissman, I.L.4
  • 112
    • 48749089743 scopus 로고    scopus 로고
    • Loss of intestinal crypt progenitor cells owing to inactivation of both Notch1 and Notch2 is accompanied by derepression of CDK inhibitors p27Kip1 and p57Kip2
    • 18274550
    • Riccio O, van Gijn ME, Bezdek AC, Pellegrinet L, van Es JH, Zimber-Strobl U, Strobl LJ, Honjo T, Clevers H, Radtke F. 2008. Loss of intestinal crypt progenitor cells owing to inactivation of both Notch1 and Notch2 is accompanied by derepression of CDK inhibitors p27Kip1 and p57Kip2. EMBO reports 9:377–383. doi: 10.1038/embor.2008.7, PMID: 18274550
    • (2008) EMBO Reports , vol.9 , pp. 377-383
    • Riccio, O.1    Van Gijn, M.E.2    Bezdek, A.C.3    Pellegrinet, L.4    Van Es, J.H.5    Zimber-Strobl, U.6    Strobl, L.J.7    Honjo, T.8    Clevers, H.9    Radtke, F.10
  • 113
    • 16844366556 scopus 로고    scopus 로고
    • RBPjkappa-dependent notch function regulates Gata2 and is essential for the formation of intra-embryonic hematopoietic cells
    • 15689374
    • Robert-Moreno A, Espinosa L, de la Pompa JL, Bigas A. 2005. RBPjkappa-dependent notch function regulates Gata2 and is essential for the formation of intra-embryonic hematopoietic cells. Development 132:1117–1126. doi: 10.1242/dev.01660, PMID: 15689374
    • (2005) Development , vol.132 , pp. 1117-1126
    • Robert-Moreno, A.1    Espinosa, L.2    De La Pompa, J.L.3    Bigas, A.4
  • 114
    • 0037968010 scopus 로고    scopus 로고
    • Basic helix-loop-helix factors in cortical development
    • 12848929
    • Ross SE, Greenberg ME, Stiles CD. 2003. Basic helix-loop-helix factors in cortical development. Neuron 39:13– 25. doi: 10.1016/S0896-6273(03)00365-9, PMID: 12848929
    • (2003) Neuron , vol.39
    • Ross, S.E.1    Greenberg, M.E.2    Stiles, C.D.3
  • 115
    • 84929151009 scopus 로고    scopus 로고
    • Spatial reconstruction of single-cell gene expression data
    • 25867923
    • Satija R, Farrell JA, Gennert D, Schier AF, Regev A. 2015. Spatial reconstruction of single-cell gene expression data. Nature Biotechnology 33:495–502. doi: 10.1038/nbt.3192, PMID: 25867923
    • (2015) Nature Biotechnology , vol.33 , pp. 495-502
    • Satija, R.1    Farrell, J.A.2    Gennert, D.3    Schier, A.F.4    Regev, A.5
  • 117
    • 56249130793 scopus 로고    scopus 로고
    • Analytical distributions for stochastic gene expression
    • 18988743
    • Shahrezaei V, Swain PS. 2008. Analytical distributions for stochastic gene expression. PNAS 105:17256–17261. doi: 10.1073/pnas.0803850105, PMID: 18988743
    • (2008) PNAS , vol.105 , pp. 17256-17261
    • Shahrezaei, V.1    Swain, P.S.2
  • 118
    • 17644402450 scopus 로고    scopus 로고
    • Targeted disruption of Tgif, the mouse ortholog of a human holoprosencephaly gene, does not result in holoprosencephaly in mice
    • 15831469
    • Shen J, Walsh CA. 2005. Targeted disruption of Tgif, the mouse ortholog of a human holoprosencephaly gene, does not result in holoprosencephaly in mice. Molecular and Cellular Biology 25:3639–3647. doi: 10.1128/MCB. 25.9.3639-3647.2005, PMID: 15831469
    • (2005) Molecular and Cellular Biology , vol.25 , pp. 3639-3647
    • Shen, J.1    Walsh, C.A.2
  • 119
    • 83655168917 scopus 로고    scopus 로고
    • Dynamic expression of notch signaling genes in neural stem/ progenitor cells
    • 21716644
    • Shimojo H, Ohtsuka T, Kageyama R. 2011. Dynamic expression of notch signaling genes in neural stem/ progenitor cells. Frontiers in Neuroscience 5:78. doi: 10.3389/fnins.2011.00078, PMID: 21716644
    • (2011) Frontiers in Neuroscience , vol.5 , pp. 78
    • Shimojo, H.1    Ohtsuka, T.2    Kageyama, R.3
  • 123
    • 0037663384 scopus 로고    scopus 로고
    • The Sox9 transcription factor determines glial fate choice in the developing spinal cord
    • 12842915
    • Stolt CC, Lommes P, Sock E, Chaboissier MC, Schedl A, Wegner M. 2003. The Sox9 transcription factor determines glial fate choice in the developing spinal cord. Genes & Development 17:1677–1689. doi: 10.1101/gad.259003, PMID: 12842915
    • (2003) Genes & Development , vol.17 , pp. 1677-1689
    • Stolt, C.C.1    Lommes, P.2    Sock, E.3    Chaboissier, M.C.4    Schedl, A.5    Wegner, M.6
  • 124
    • 0020858899 scopus 로고
    • The embryonic cell lineage of the nematode caenorhabditis elegans
    • 6684600
    • Sulston JE, Schierenberg E, White JG, Thomson JN. 1983. The embryonic cell lineage of the nematode caenorhabditis elegans. Developmental Biology 100:64–119. doi: 10.1016/0012-1606(83)90201-4, PMID: 6684600
    • (1983) Developmental Biology , vol.100 , pp. 64-119
    • Sulston, J.E.1    Schierenberg, E.2    White, J.G.3    Thomson, J.N.4
  • 125
    • 27644507808 scopus 로고    scopus 로고
    • Patterning and plasticity of the cerebral cortex
    • 16272112
    • Sur M, Rubenstein JL. 2005. Patterning and plasticity of the cerebral cortex. Science 310:805–810. doi: 10.1126/science.1112070, PMID: 16272112
    • (2005) Science , vol.310 , pp. 805-810
    • Sur, M.1    Rubenstein, J.L.2
  • 126
    • 33747195353 scopus 로고    scopus 로고
    • Induction of pluripotent stem cells from mouse embryonic and adult fibroblast cultures by defined factors
    • 16904174
    • Takahashi K, Yamanaka S. 2006. Induction of pluripotent stem cells from mouse embryonic and adult fibroblast cultures by defined factors. Cell 126:663–676. doi: 10.1016/j.cell.2006.07.024, PMID: 16904174
    • (2006) Cell , vol.126 , pp. 663-676
    • Takahashi, K.1    Yamanaka, S.2
  • 127
    • 0033680746 scopus 로고    scopus 로고
    • ICSBP directs bipotential myeloid progenitor cells to differentiate into mature macrophages
    • 10981959
    • Tamura T, Nagamura-Inoue T, Shmeltzer Z, Kuwata T, Ozato K. 2000. ICSBP directs bipotential myeloid progenitor cells to differentiate into mature macrophages. Immunity 13:155–165. doi: 10.1016/S1074-7613(00) 00016-9, PMID: 10981959
    • (2000) Immunity , vol.13 , pp. 155-165
    • Tamura, T.1    Nagamura-Inoue, T.2    Shmeltzer, Z.3    Kuwata, T.4    Ozato, K.5
  • 128
    • 84901047161 scopus 로고    scopus 로고
    • Brn4 and TH synergistically promote the differentiation of neural stem cells into dopaminergic neurons
    • 24769320
    • Tan X, Zhang L, Zhu H, Qin J, Tian M, Dong C, Li H, Jin G. 2014. Brn4 and TH synergistically promote the differentiation of neural stem cells into dopaminergic neurons. Neuroscience Letters 571:23–28. doi: 10.1016/j. neulet.2014.04.019, PMID: 24769320
    • (2014) Neuroscience Letters , vol.571 , pp. 23-28
    • Tan, X.1    Zhang, L.2    Zhu, H.3    Qin, J.4    Tian, M.5    Dong, C.6    Li, H.7    Jin, G.8
  • 130
    • 79958263080 scopus 로고    scopus 로고
    • Pluripotency factors in embryonic stem cells regulate differentiation into germ layers
    • 21663792
    • Thomson M, Liu SJ, Zou LN, Smith Z, Meissner A, Ramanathan S. 2011. Pluripotency factors in embryonic stem cells regulate differentiation into germ layers. Cell 145:875–889. doi: 10.1016/j.cell.2011.05.017, PMID: 21663792
    • (2011) Cell , vol.145 , pp. 875-889
    • Thomson, M.1    Liu, S.J.2    Zou, L.N.3    Smith, Z.4    Meissner, A.5    Ramanathan, S.6
  • 132
    • 79955040218 scopus 로고    scopus 로고
    • Regression shrinkage and selection via the lasso. Journal of the Royal Statistical Society
    • Tibshirani R. 1996. Regression shrinkage and selection via the lasso. Journal of the Royal Statistical Society. Series B 58:267–288. doi:10.1111/j.1467-9868.2011.00771.x
    • (1996) Series B , vol.58 , pp. 267-288
    • Tibshirani, R.1
  • 133
    • 1842557733 scopus 로고    scopus 로고
    • Regulation of mammalian epithelial differentiation and intestine development by class I histone deacetylases
    • 15060137
    • Tou L, Liu Q, Shivdasani RA. 2004. Regulation of mammalian epithelial differentiation and intestine development by class I histone deacetylases. Molecular and Cellular Biology 24:3132–3139. doi: 10.1128/MCB.24.8.3132-3139.2004, PMID: 15060137
    • (2004) Molecular and Cellular Biology , vol.24 , pp. 3132-3139
    • Tou, L.1    Liu, Q.2    Shivdasani, R.A.3
  • 135
    • 84942940566 scopus 로고    scopus 로고
    • Defining cell types and states with single-cell genomics
    • 26430159
    • Trapnell C. 2015. Defining cell types and states with single-cell genomics. Genome research 25:1491–1498. doi: 10.1101/gr.190595.115, PMID: 26430159
    • (2015) Genome Research , vol.25 , pp. 1491-1498
    • Trapnell, C.1
  • 137
    • 0032400970 scopus 로고    scopus 로고
    • Id1, Id2, and Id3 gene expression in neural cells during development
    • 9814817
    • Tzeng SF, de Vellis J. 1998. Id1, Id2, and Id3 gene expression in neural cells during development. Glia 24:372– 381. doi: 10.1002/(SICI)1098-1136(199812)24:4<372::AID-GLIA2>3.0.CO;2-B, PMID: 9814817
    • (1998) Glia , vol.24
    • Tzeng, S.F.1    De Vellis, J.2
  • 138
    • 0013070720 scopus 로고    scopus 로고
    • Expression of the bHLH transcription factor Tcf12 (ME1) gene is linked to the expansion of precursor cell populations during neurogenesis
    • 15018808
    • Uittenbogaard M, Chiaramello A. 2002. Expression of the bHLH transcription factor Tcf12 (ME1) gene is linked to the expansion of precursor cell populations during neurogenesis. Gene Expression Patterns 1:115–121. doi: 10.1016/S1567-133X(01)00022-9, PMID: 15018808
    • (2002) Gene Expression Patterns , vol.1 , pp. 115-121
    • Uittenbogaard, M.1    Chiaramello, A.2
  • 139
    • 67651159312 scopus 로고    scopus 로고
    • Stem cells, self-renewal, and differentiation in the intestinal epithelium
    • 18808327
    • van der Flier LG, Clevers H. 2009. Stem cells, self-renewal, and differentiation in the intestinal epithelium. Annual Review of Physiology 71:241–260. doi: 10.1146/annurev.physiol.010908.163145, PMID: 18808327
    • (2009) Annual Review of Physiology , vol.71 , pp. 241-260
    • Van Der Flier, L.G.1    Clevers, H.2
  • 142
    • 77956883150 scopus 로고    scopus 로고
    • Mouse atonal homolog 1 directs intestinal progenitors to secretory cell rather than absorptive cell fate
    • 20691176
    • VanDussen KL, Samuelson LC. 2010. Mouse atonal homolog 1 directs intestinal progenitors to secretory cell rather than absorptive cell fate. Developmental Biology 346:215–223. doi: 10.1016/j.ydbio.2010.07.026, PMID: 20691176
    • (2010) Developmental Biology , vol.346 , pp. 215-223
    • Vandussen, K.L.1    Samuelson, L.C.2
  • 143
    • 84898715615 scopus 로고    scopus 로고
    • The hippo pathway effectors TAZ and YAP in development, homeostasis and disease
    • 24715453
    • Varelas X. 2014. The hippo pathway effectors TAZ and YAP in development, homeostasis and disease. Development 141. doi: 10.1242/dev.102376, PMID: 24715453
    • (2014) Development , vol.141
    • Varelas, X.1
  • 145
    • 65749083666 scopus 로고    scopus 로고
    • Sharp thresholds for High-Dimensional and noisy sparsity recovery using $\ell _{1} $ -Constrained Quadratic Programming (Lasso)
    • Wainwright MJ. 2009. Sharp thresholds for High-Dimensional and noisy sparsity recovery using $\ell _{1} $ -Constrained Quadratic Programming (Lasso). IEEE Transactions on Information Theory 55:2183–2202.
    • (2009) IEEE Transactions on Information Theory , vol.55 , pp. 2183-2202
    • Wainwright, M.J.1
  • 149
    • 84882582801 scopus 로고    scopus 로고
    • Single-cell gene expression analysis reveals genetic associations masked in whole-tissue experiments
    • 23873083
    • Wills QF, Livak KJ, Tipping AJ, Enver T, Goldson AJ, Sexton DW, Holmes C. 2013. Single-cell gene expression analysis reveals genetic associations masked in whole-tissue experiments. Nature Biotechnology 31:748–752. doi: 10.1038/nbt.2642, PMID: 23873083
    • (2013) Nature Biotechnology , vol.31 , pp. 748-752
    • Wills, Q.F.1    Livak, K.J.2    Tipping, A.J.3    Enver, T.4    Goldson, A.J.5    Sexton, D.W.6    Holmes, C.7
  • 151
    • 84963958165 scopus 로고    scopus 로고
    • Ctip1 regulates the balance between specification of distinct projection neuron subtypes in deep cortical layers
    • 27117402
    • Woodworth MB, Greig LC, Liu KX, Ippolito GC, Tucker HO, Macklis JD. 2016. Ctip1 regulates the balance between specification of distinct projection neuron subtypes in deep cortical layers. Cell Reports 15:999–1012. doi: 10.1016/j.celrep.2016.03.064, PMID: 27117402
    • (2016) Cell Reports , vol.15 , pp. 999-1012
    • Woodworth, M.B.1    Greig, L.C.2    Liu, K.X.3    Ippolito, G.C.4    Tucker, H.O.5    Macklis, J.D.6
  • 152
    • 78650866071 scopus 로고    scopus 로고
    • NF-kB in the regulation of epithelial homeostasis and inflammation
    • 21151201
    • Wullaert A, Bonnet MC, Pasparakis M. 2011. NF-kB in the regulation of epithelial homeostasis and inflammation. Cell Research 21:146–158. doi: 10.1038/cr.2010.175, PMID: 21151201
    • (2011) Cell Research , vol.21 , pp. 146-158
    • Wullaert, A.1    Bonnet, M.C.2    Pasparakis, M.3
  • 153
    • 84943584408 scopus 로고    scopus 로고
    • Ebf2 is required for development of dopamine neurons in the midbrain periaqueductal gray matter of mouse
    • 25762221
    • Yang Q, Liu S, Yin M, Yin Y, Zhou G, Zhou J. 2015. Ebf2 is required for development of dopamine neurons in the midbrain periaqueductal gray matter of mouse. Developmental Neurobiology 75:1282–1294. doi: 10.1002/dneu.22284, PMID: 25762221
    • (2015) Developmental Neurobiology , vol.75 , pp. 1282-1294
    • Yang, Q.1    Liu, S.2    Yin, M.3    Yin, Y.4    Zhou, G.5    Zhou, J.6
  • 155
    • 70949092295 scopus 로고    scopus 로고
    • Foxa1 and Foxa2 control the differentiation of goblet and enteroendocrine L- and D-cells in mice
    • 19737569
    • Ye DZ, Kaestner KH. 2009. Foxa1 and Foxa2 control the differentiation of goblet and enteroendocrine L- and D-cells in mice. Gastroenterology 137:2052–2062. doi: 10.1053/j.gastro.2009.08.059, PMID: 19737569
    • (2009) Gastroenterology , vol.137 , pp. 2052-2062
    • Ye, D.Z.1    Kaestner, K.H.2
  • 156
    • 65549155389 scopus 로고    scopus 로고
    • Ventral mesencephalon-enriched genes that regulate the development of dopaminergic neurons in vivo
    • 19386913
    • Yin M, Liu S, Yin Y, Li S, Li Z, Wu X, Zhang B, Ang SL, Ding Y, Zhou J. 2009. Ventral mesencephalon-enriched genes that regulate the development of dopaminergic neurons in vivo. Journal of Neuroscience 29:5170–5182. doi: 10.1523/JNEUROSCI.5569-08.2009, PMID: 19386913
    • (2009) Journal of Neuroscience , vol.29 , pp. 5170-5182
    • Yin, M.1    Liu, S.2    Yin, Y.3    Li, S.4    Li, Z.5    Wu, X.6    Zhang, B.7    Ang, S.L.8    Ding, Y.9    Zhou, J.10
  • 157
    • 84863116829 scopus 로고    scopus 로고
    • Krüppel-like factor 4 regulates intestinal epithelial cell morphology and polarity
    • 22384261
    • Yu T, Chen X, Zhang W, Li J, Xu R, Wang TC, Ai W, Liu C, Ghaleb A, McConnell B. 2012. Krüppel-like factor 4 regulates intestinal epithelial cell morphology and polarity. PLoS One 7:e32492. doi: 10.1371/journal.pone. 0032492, PMID: 22384261
    • (2012) Plos One , vol.7
    • Yu, T.1    Chen, X.2    Zhang, W.3    Li, J.4    Xu, R.5    Wang, T.C.6    Ai, W.7    Liu, C.8    Ghaleb, A.9    McConnell, B.10
  • 159
    • 34547322124 scopus 로고    scopus 로고
    • Genetic interplay between the transcription factors Sp8 and Emx2 in the patterning of the forebrain
    • 17470284
    • Zembrzycki A, Griesel G, Stoykova A, Mansouri A. 2007. Genetic interplay between the transcription factors Sp8 and Emx2 in the patterning of the forebrain. Neural Development 2:8. doi: 10.1186/1749-8104-2-8, PMID: 17470284
    • (2007) Neural Development , vol.2 , pp. 8
    • Zembrzycki, A.1    Griesel, G.2    Stoykova, A.3    Mansouri, A.4
  • 160


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