-
1
-
-
48249141040
-
Allostery and cooperativity revisited
-
Cui, Q., Karplus, M. (2008) Allostery and cooperativity revisited. Protein Sci., 17, 1295-1307.
-
(2008)
Protein Sci.
, vol.17
, pp. 1295-1307
-
-
Cui, Q.1
Karplus, M.2
-
2
-
-
84861219631
-
Allostery and the Monod-Wyman-Changeux model after 50 years
-
Changeux, J.-P. (2012) Allostery and the Monod-Wyman-Changeux model after 50 years. Annu. Rev. Biophys., 41, 103-133.
-
(2012)
Annu. Rev. Biophys.
, vol.41
, pp. 103-133
-
-
Changeux, J.-P.1
-
3
-
-
84895745240
-
A unified view of 'how allostery works'
-
Tsai, C.-J., Nussinov, R. (2014) A unified view of 'how allostery works'. PLoS Comput. Biol., 10, e1003394.
-
(2014)
PLoS Comput. Biol.
, vol.10
, pp. e1003394
-
-
Tsai, C.-J.1
Nussinov, R.2
-
4
-
-
84969562012
-
A chemical perspective on allostery
-
Ribeiro, A. A. S. T., Ortiz, V. (2016) A chemical perspective on allostery. Chem. Rev., 116, 6488-6502.
-
(2016)
Chem. Rev.
, vol.116
, pp. 6488-6502
-
-
Ribeiro, A.A.S.T.1
Ortiz, V.2
-
5
-
-
84963890476
-
The role of protein loops and linkers in conformational dynamics and allostery
-
Papaleo, E., Saladino, G., Lambrughi, M., Lindorff-Larsen, K., Gervasio, F. L., Nussinov, R. (2016) The role of protein loops and linkers in conformational dynamics and allostery. Chem. Rev., 116, 6391-6423.
-
(2016)
Chem. Rev.
, vol.116
, pp. 6391-6423
-
-
Papaleo, E.1
Saladino, G.2
Lambrughi, M.3
Lindorff-Larsen, K.4
Gervasio, F.L.5
Nussinov, R.6
-
6
-
-
6344219895
-
Is allostery an intrinsic property of all dynamic proteins
-
Gunasekaran, K., Ma, B., Nussinov, R. (2004) Is allostery an intrinsic property of all dynamic proteins Proteins, 57, 433-443.
-
(2004)
Proteins
, vol.57
, pp. 433-443
-
-
Gunasekaran, K.1
Ma, B.2
Nussinov, R.3
-
7
-
-
33746911627
-
Dynamic coupling and allosteric behavior in a nonallosteric protein
-
Clarkson, M. W., Gilmore, S. A., Edgell, M. H., Lee, A. L. (2006) Dynamic coupling and allosteric behavior in a nonallosteric protein. Biochemistry, 45, 7693-7699.
-
(2006)
Biochemistry
, vol.45
, pp. 7693-7699
-
-
Clarkson, M.W.1
Gilmore, S.A.2
Edgell, M.H.3
Lee, A.L.4
-
8
-
-
68149157248
-
The origin of allosteric functional modulation: Multiple pre-existing pathways
-
del Sol, A., Tsai, C.-J., Ma, B., Nussinov, R. (2009) The origin of allosteric functional modulation: multiple pre-existing pathways. Structure, 17, 1042-1050.
-
(2009)
Structure
, vol.17
, pp. 1042-1050
-
-
Del Sol, A.1
Tsai, C.-J.2
Ma, B.3
Nussinov, R.4
-
9
-
-
3042651100
-
Conformational spread: The propagation of allosteric states in large multiprotein complexes
-
Bray, D., Duke, T. (2004) Conformational spread: the propagation of allosteric states in large multiprotein complexes. Annu. Rev. Biophys. Biomol. Struct., 33, 53-73.
-
(2004)
Annu. Rev. Biophys. Biomol. Struct.
, vol.33
, pp. 53-73
-
-
Bray, D.1
Duke, T.2
-
10
-
-
41149104308
-
Allostery: Absence of a change in shape does not imply that allostery is not at play
-
Tsai, C. J., del Sol, A., Nussinov, R. (2008) Allostery: Absence of a change in shape does not imply that allostery is not at play. J. Mol. Biol., 378, 1-11.
-
(2008)
J. Mol. Biol.
, vol.378
, pp. 1-11
-
-
Tsai, C.J.1
Del Sol, A.2
Nussinov, R.3
-
11
-
-
47649125643
-
Allosteric regulation and catalysis emerge via a common route
-
Goodey, N. M., Benkovic, S. J. (2008) Allosteric regulation and catalysis emerge via a common route. Nat. Chem. Biol., 4, 474-482.
-
(2008)
Nat. Chem. Biol.
, vol.4
, pp. 474-482
-
-
Goodey, N.M.1
Benkovic, S.J.2
-
12
-
-
32344434479
-
The changing landscape of protein allostery
-
Swain, J. F., Gierasch, L. M. (2006) The changing landscape of protein allostery. Curr. Opin. Struct. Biol., 16, 102-108.
-
(2006)
Curr. Opin. Struct. Biol.
, vol.16
, pp. 102-108
-
-
Swain, J.F.1
Gierasch, L.M.2
-
13
-
-
40549084038
-
Contact rearrangements form coupled networks from local motions in allosteric proteins
-
Daily, M. D., Upadhyaya, T. J., Gray, J. J. (2008) Contact rearrangements form coupled networks from local motions in allosteric proteins. Proteins, 71, 455-466.
-
(2008)
Proteins
, vol.71
, pp. 455-466
-
-
Daily, M.D.1
Upadhyaya, T.J.2
Gray, J.J.3
-
14
-
-
84974577224
-
Controlling allosteric networks in proteins
-
Dokholyan, N. V. (2016) Controlling Allosteric Networks in Proteins. Chem. Rev., 116, 6463-6487.
-
(2016)
Chem. Rev.
, vol.116
, pp. 6463-6487
-
-
Dokholyan, N.V.1
-
15
-
-
84876275408
-
The underappreciated role of allostery in the cellular network
-
Nussinov, R., Tsai, C.-J., Ma, B. (2013) The underappreciated role of allostery in the cellular network. Annu. Rev. Biophys., 42, 169-189.
-
(2013)
Annu. Rev. Biophys.
, vol.42
, pp. 169-189
-
-
Nussinov, R.1
Tsai, C.-J.2
Ma, B.3
-
16
-
-
84876266689
-
Allostery in disease and in drug discovery
-
Nussinov, R., Tsai, C.-J. (2013) Allostery in disease and in drug discovery. Cell, 153, 293-305.
-
(2013)
Cell
, vol.153
, pp. 293-305
-
-
Nussinov, R.1
Tsai, C.-J.2
-
17
-
-
79958789051
-
Exploring and exploiting allostery: Models, evolution, drug targeting
-
Peracchi, A., Mozzarelli, A. (2011) Exploring and exploiting allostery: Models, evolution, drug targeting. Biochim. Biophys. Acta, 1814, 922-933.
-
(2011)
Biochim. Biophys. Acta
, vol.1814
, pp. 922-933
-
-
Peracchi, A.1
Mozzarelli, A.2
-
18
-
-
84857860530
-
NMR insights into protein allostery
-
Manley, G., Loria, J. P. (2012) NMR insights into protein allostery. Arch. Biochem. Biophys., 519, 223-231.
-
(2012)
Arch. Biochem. Biophys.
, vol.519
, pp. 223-231
-
-
Manley, G.1
Loria, J.P.2
-
20
-
-
84896484176
-
Computational approaches to mapping allosteric pathways
-
Feher, V. A., Durrant, J. D., Van Wart, A. T., Amaro, R. E. (2014) Computational approaches to mapping allosteric pathways. Curr. Opin. Struct. Biol., 25, 98-103.
-
(2014)
Curr. Opin. Struct. Biol.
, vol.25
, pp. 98-103
-
-
Feher, V.A.1
Durrant, J.D.2
Van Wart, A.T.3
Amaro, R.E.4
-
21
-
-
84861367246
-
Biomolecular simulation: A computational microscope for molecular biology
-
Dror, R. O., Dirks, R. M., Grossman, J. P., Xu, H., Shaw, D. E. (2012) Biomolecular simulation: A computational microscope for molecular biology. Annu. Rev. Biophys., 41, 429-452.
-
(2012)
Annu. Rev. Biophys.
, vol.41
, pp. 429-452
-
-
Dror, R.O.1
Dirks, R.M.2
Grossman, J.P.3
Xu, H.4
Shaw, D.E.5
-
22
-
-
35648944297
-
A study of communication pathways in methionyl-tRNA synthetase by molecular dynamics simulations and structure network analysis
-
Ghosh, A., Vishveshwara, S. (2007) A study of communication pathways in methionyl-tRNA synthetase by molecular dynamics simulations and structure network analysis. Proc. Natl. Acad. Sci. U. S. A., 104, 15711-15716.
-
(2007)
Proc. Natl. Acad. Sci. U. S. A.
, vol.104
, pp. 15711-15716
-
-
Ghosh, A.1
Vishveshwara, S.2
-
23
-
-
33750040264
-
Free-energy landscape for beta hairpin folding from combined parallel tempering and metadynamics
-
Bussi, G., Gervasio, F. L., Laio, A., Parrinello, M. (2006) Free-energy landscape for beta hairpin folding from combined parallel tempering and metadynamics. J. Am. Chem. Soc., 128, 13435-13441.
-
(2006)
J. Am. Chem. Soc.
, vol.128
, pp. 13435-13441
-
-
Bussi, G.1
Gervasio, F.L.2
Laio, A.3
Parrinello, M.4
-
24
-
-
84879510153
-
Effects of oncogenic mutations on the conformational free-energy landscape of EGFR kinase
-
Sutto, L., Gervasio, F. L. (2013) Effects of oncogenic mutations on the conformational free-energy landscape of EGFR kinase. Proc. Natl. Acad. Sci. U. S. A., 110, 10616-10621.
-
(2013)
Proc. Natl. Acad. Sci. U. S. A.
, vol.110
, pp. 10616-10621
-
-
Sutto, L.1
Gervasio, F.L.2
-
25
-
-
84883387419
-
The allosteric communication pathways in KIX domain of CBP
-
Palazzesi, F., Barducci, A., Tollinger, M., Parrinello, M. (2013) The allosteric communication pathways in KIX domain of CBP. Proc. Natl. Acad. Sci. U. S. A., 110, 14237-14242.
-
(2013)
Proc. Natl. Acad. Sci. U. S. A.
, vol.110
, pp. 14237-14242
-
-
Palazzesi, F.1
Barducci, A.2
Tollinger, M.3
Parrinello, M.4
-
26
-
-
84855765478
-
Conformational selection versus induced fit in kinases: The case of PI3K
-
D'Abramo, M., Rabal, O., Oyarzabal, J., Gervasio, F. L. (2012) Conformational selection versus induced fit in kinases: the case of PI3K-. Angew. Chem. Int. Ed. Engl., 51, 642-646.
-
(2012)
Angew. Chem. Int. Ed. Engl.
, vol.51
, pp. 642-646
-
-
D'Abramo, M.1
Rabal, O.2
Oyarzabal, J.3
Gervasio, F.L.4
-
27
-
-
84876494489
-
The mechanism of allosteric coupling in choline kinase-1 revealed by the action of a rationally designed inhibitor
-
Sahn-Roncero, M., Rubio-Ruiz, B., Saladino, G., Conejo-Garc, A., Espinosa, A., Velzquez-Campoy, A., Gervasio, F. L., Entrena, A., Hurtado-Guerrero, R. (2013) The mechanism of allosteric coupling in choline kinase-1 revealed by the action of a rationally designed inhibitor. Angew. Chem. Int. Ed. Engl., 52, 4582-4586.
-
(2013)
Angew. Chem. Int. Ed. Engl.
, vol.52
, pp. 4582-4586
-
-
Sahn-Roncero, M.1
Rubio-Ruiz, B.2
Saladino, G.3
Conejo-Garc, A.4
Espinosa, A.5
Velzquez-Campoy, A.6
Gervasio, F.L.7
Entrena, A.8
Hurtado-Guerrero, R.9
-
28
-
-
84907199037
-
Conformational changes and free energies in a proline isomerase
-
Papaleo, E., Sutto, L., Gervasio, F. L., Lindorff-Larsen, K. (2014) Conformational changes and free energies in a proline isomerase. J. Chem. Theory Comput., 10, 4169-4174.
-
(2014)
J. Chem. Theory Comput.
, vol.10
, pp. 4169-4174
-
-
Papaleo, E.1
Sutto, L.2
Gervasio, F.L.3
Lindorff-Larsen, K.4
-
29
-
-
47649096991
-
Structural biology of the tumor suppressor p53
-
Joerger, A. C., Fersht, A. R. (2008) Structural biology of the tumor suppressor p53. Annu. Rev. Biochem., 77, 557-582.
-
(2008)
Annu. Rev. Biochem.
, vol.77
, pp. 557-582
-
-
Joerger, A.C.1
Fersht, A.R.2
-
30
-
-
0034676455
-
Surfing the p53 network
-
Vogelstein, B., Lane, D., Levine, a. J. (2000) Surfing the p53 network. Nature, 408, 307-310.
-
(2000)
Nature
, vol.408
, pp. 307-310
-
-
Vogelstein, B.1
Lane, D.2
Levine, A.J.3
-
31
-
-
0036674617
-
Live or let die: The cell's response to p53
-
Vousden, K. H., Lu, X. (2002) Live or let die: the cell's response to p53. Nat. Rev. Cancer, 2, 594-604.
-
(2002)
Nat. Rev. Cancer
, vol.2
, pp. 594-604
-
-
Vousden, K.H.1
Lu, X.2
-
32
-
-
70449769325
-
Protein-protein interaction networks: How can a hub protein bind so many different partners
-
Tsai, C.-J., Ma, B., Nussinov, R. (2009) Protein-protein interaction networks: how can a hub protein bind so many different partners Trends Biochem. Sci., 34, 594-600.
-
(2009)
Trends Biochem. Sci.
, vol.34
, pp. 594-600
-
-
Tsai, C.-J.1
Ma, B.2
Nussinov, R.3
-
33
-
-
40949117264
-
Flexible nets: Disorder and induced fit in the associations of p53 and 14-3-3 with their partners
-
Oldfield, C. J., Meng, J., Yang, J. Y., Yang, M. Q., Uversky, V. N., Dunker, A. K. (2008) Flexible nets: disorder and induced fit in the associations of p53 and 14-3-3 with their partners. BMC Genomics, 9(Suppl. 1), S1.
-
(2008)
BMC Genomics
, vol.9
, pp. S1
-
-
Oldfield, C.J.1
Meng, J.2
Yang, J.Y.3
Yang, M.Q.4
Uversky, V.N.5
Dunker, A.K.6
-
34
-
-
84862605239
-
Motif switches: Decision-making in cell regulation
-
Van Roey, K., Gibson, T. J., Davey, N. E. (2012) Motif switches: Decision-making in cell regulation. Curr. Opin. Struct. Biol., 22, 378-385.
-
(2012)
Curr. Opin. Struct. Biol.
, vol.22
, pp. 378-385
-
-
Van Roey, K.1
Gibson, T.J.2
Davey, N.E.3
-
35
-
-
76749128492
-
Differences in the transactivation domains of p53 family members: A computational study
-
Mavinahalli, J. N., Madhumalar, A., Beuerman, R. W., Lane, D. P., Verma, C. (2010) Differences in the transactivation domains of p53 family members: a computational study. BMC Genomics, 11(Suppl. 1), S5.
-
(2010)
BMC Genomics
, vol.11
, pp. S5
-
-
Mavinahalli, J.N.1
Madhumalar, A.2
Beuerman, R.W.3
Lane, D.P.4
Verma, C.5
-
36
-
-
72949088633
-
Towards inferring time dimensionality in protein-protein interaction networks by integrating structures: The p53 example
-
Tuncbag, N., Kar, G., Gursoy, A., Keskin, O., Nussinov, R. (2009) Towards inferring time dimensionality in protein-protein interaction networks by integrating structures: The p53 example. Mol. Biosyst., 5, 1770-1778.
-
(2009)
Mol. Biosyst.
, vol.5
, pp. 1770-1778
-
-
Tuncbag, N.1
Kar, G.2
Gursoy, A.3
Keskin, O.4
Nussinov, R.5
-
37
-
-
65949083750
-
Cytoplasmic functions of the tumour suppressor p53
-
Green, D. R., Kroemer, G. (2009) Cytoplasmic functions of the tumour suppressor p53. Nature, 458, 1127-1130.
-
(2009)
Nature
, vol.458
, pp. 1127-1130
-
-
Green, D.R.1
Kroemer, G.2
-
38
-
-
84902009201
-
The DNA-binding domain mediates both nuclear and cytosolic functions of p53
-
Follis, A. V., Llambi, F., Ou, L., Baran, K., Green, D. R., Kriwacki, R. W. (2014) The DNA-binding domain mediates both nuclear and cytosolic functions of p53. Nat. Struct. Mol. Biol., 21, 535-543.
-
(2014)
Nat. Struct. Mol. Biol.
, vol.21
, pp. 535-543
-
-
Follis, A.V.1
Llambi, F.2
Ou, L.3
Baran, K.4
Green, D.R.5
Kriwacki, R.W.6
-
39
-
-
84866878478
-
Domain-domain interactions in full-length p53 and a specific DNA complex probed by methyl NMR spectroscopy
-
Bista, M., Freund, S. M., Fersht, A. R. (2012) Domain-domain interactions in full-length p53 and a specific DNA complex probed by methyl NMR spectroscopy. Proc. Natl. Acad. Sci. U. S. A., 109, 15752-15756.
-
(2012)
Proc. Natl. Acad. Sci. U. S. A.
, vol.109
, pp. 15752-15756
-
-
Bista, M.1
Freund, S.M.2
Fersht, A.R.3
-
40
-
-
78049445574
-
Lysine120 Interactions with p53 response elements can allosterically direct p53 Organization
-
Pan, Y., Nussinov, R. (2010) Lysine120 Interactions with p53 Response Elements can Allosterically Direct p53 Organization. PLoS Comput. Biol., 6, e1000878.
-
(2010)
PLoS Comput. Biol.
, vol.6
, pp. e1000878
-
-
Pan, Y.1
Nussinov, R.2
-
41
-
-
33144474649
-
Solution structure of p53 core domain: Structural basis for its instability
-
Cã nadillas, J. M. P., Tidow, H., Freund, S. M. V, Rutherford, T. J., Ang, H. C., Fersht, A. R. (2006) Solution structure of p53 core domain: structural basis for its instability. Proc. Natl. Acad. Sci. U. S. A., 103, 2109-2114.
-
(2006)
Proc. Natl. Acad. Sci. U. S. A.
, vol.103
, pp. 2109-2114
-
-
Cañadillas, J.M.P.1
Tidow, H.2
Freund, S.M.V.3
Rutherford, T.J.4
Ang, H.C.5
Fersht, A.R.6
-
42
-
-
79957894792
-
An induced fit mechanism regulates p53 DNA binding kinetics to confer sequence specificity
-
Petty, T. J., Emamzadah, S., Costantino, L., Petkova, I., Stavridi, E. S., Saven, J. G., Vauthey, E., Halazonetis, T. D. (2011) An induced fit mechanism regulates p53 DNA binding kinetics to confer sequence specificity. EMBO J., 30, 2167-2176.
-
(2011)
EMBO J.
, vol.30
, pp. 2167-2176
-
-
Petty, T.J.1
Emamzadah, S.2
Costantino, L.3
Petkova, I.4
Stavridi, E.S.5
Saven, J.G.6
Vauthey, E.7
Halazonetis, T.D.8
-
43
-
-
84893122526
-
Mapping the structural and dynamical features of multiple p53 DNA binding domains: Insights into loop 1 intrinsic dynamics
-
Lukman, S., Lane, D. P., Verma, C. S. (2013) Mapping the structural and dynamical features of multiple p53 DNA binding domains: insights into loop 1 intrinsic dynamics. PLoS One, 8, e80221.
-
(2013)
PLoS One
, vol.8
, pp. e80221
-
-
Lukman, S.1
Lane, D.P.2
Verma, C.S.3
-
44
-
-
84975717995
-
The p53 tetramer shows an induced-fit interaction of the C-terminal domain with the DNA-binding domain
-
Abramo, M. D., Besker, N., Desideri, A., Levine, A. J., Melino, G., Chillemi, G. (2015) The p53 tetramer shows an induced-fit interaction of the C-terminal domain with the DNA-binding domain. Oncogene, 35, 3272-3281.
-
(2015)
Oncogene
, vol.35
, pp. 3272-3281
-
-
Abramo, M.D.1
Besker, N.2
Desideri, A.3
Levine, A.J.4
Melino, G.5
Chillemi, G.6
-
45
-
-
84954392414
-
R248Q mutation-Beyond p53-DNA binding
-
Ng, J. W. K., Lama, D., Lukman, S., Lane, D. P., Verma, C. S., Sim, A. Y. L. (2015) R248Q mutation-Beyond p53-DNA binding. Proteins, 83, 2240-2250.
-
(2015)
Proteins
, vol.83
, pp. 2240-2250
-
-
Ng, J.W.K.1
Lama, D.2
Lukman, S.3
Lane, D.P.4
Verma, C.S.5
Sim, A.Y.L.6
-
46
-
-
10644227569
-
Aurora-A abrogation of p53 DNA binding and transactivation activity by phosphorylation of serine 215
-
Liu, Q., Kaneko, S., Yang, L., Feldman, R. I., Nicosia, S. V, Chen, J., Cheng, J. Q., Opin, W. C. (2004) Aurora-A abrogation of p53 DNA binding and transactivation activity by phosphorylation of serine 215. J. Biol. Chem., 279, 52175-52182.
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 52175-52182
-
-
Liu, Q.1
Kaneko, S.2
Yang, L.3
Feldman, R.I.4
Nicosia, S.V.5
Chen, J.6
Cheng, J.Q.7
Opin, W.C.8
-
47
-
-
78549279515
-
A novel p53 phosphorylation site within the MDM2 ubiquitination signal II. A model in which phosphorylation at ser 269 induces a mutant
-
Fraser, J. A., Madhumalar, A., Blackburn, E., Bramham, J., Walkinshaw, M. D., Verma, C., Hupp, T. R. (2010) A novel p53 phosphorylation site within the MDM2 ubiquitination signal II. A model in which phosphorylation at Ser 269 induces a mutant. J. Biol. Chem., 285, 37773-37786.
-
(2010)
J. Biol. Chem.
, vol.285
, pp. 37773-37786
-
-
Fraser, J.A.1
Madhumalar, A.2
Blackburn, E.3
Bramham, J.4
Walkinshaw, M.D.5
Verma, C.6
Hupp, T.R.7
-
48
-
-
84863583787
-
Kaposi's Sarcoma Herpesvirus upregulates Aurora A expression to promote p53 phosphorylation and ubiquitylation
-
Cai, Q., Xiao, B., Si, H., Cervini, A., Gao, J., Lu, J., Santosh, K., Verma, S. C., Robertson, E. S. (2012) Kaposi's Sarcoma Herpesvirus upregulates Aurora A expression to promote p53 phosphorylation and ubiquitylation. PLoS Pathog., 8, e1002566.
-
(2012)
PLoS Pathog.
, vol.8
, pp. e1002566
-
-
Cai, Q.1
Xiao, B.2
Si, H.3
Cervini, A.4
Gao, J.5
Lu, J.6
Santosh, K.7
Verma, S.C.8
Robertson, E.S.9
-
49
-
-
0027983669
-
Crystal structure of a p53 tumor suppressor-DNA complex: Understanding tumorigenic mutations
-
Cho, Y., Gorina, S., Jeffrey, P. D., Pavletich, N. P. (1994) Crystal structure of a p53 tumor suppressor-DNA complex: Understanding tumorigenic mutations. Science, 265, 346-355.
-
(1994)
Science
, vol.265
, pp. 346-355
-
-
Cho, Y.1
Gorina, S.2
Jeffrey, P.D.3
Pavletich, N.P.4
-
50
-
-
79956071405
-
Interaction of the p53 DNA-binding domain with its n-terminal extension modulates the stability of the p53 tetramer
-
Natan, E., Baloglu, C., Pagel, K., Freund, S. M. V., Morgner, N., Robinson, C. V., Fersht, A. R., Joerger, A. C. (2011) Interaction of the p53 DNA-binding domain with its n-terminal extension modulates the stability of the p53 tetramer. J. Mol. Biol., 409, 358-368.
-
(2011)
J. Mol. Biol.
, vol.409
, pp. 358-368
-
-
Natan, E.1
Baloglu, C.2
Pagel, K.3
Freund, S.M.V.4
Morgner, N.5
Robinson, C.V.6
Fersht, A.R.7
Joerger, A.C.8
-
51
-
-
46249092554
-
GROMACS 4: Algorithms for highly efficient, load-balanced, scalable molecular simulation
-
Hess, B., Kutzner, C., van der Spoel, D., Lindahl, E. (2008) GROMACS 4: Algorithms for highly efficient, load-balanced, scalable molecular simulation. J. Chem. Theory Comput., 4, 435-447.
-
(2008)
J. Chem. Theory Comput.
, vol.4
, pp. 435-447
-
-
Hess, B.1
Kutzner, C.2
Van Der Spoel, D.3
Lindahl, E.4
-
52
-
-
69349100797
-
PLUMED: A portable plugin for free-energy calculations with molecular dynamics
-
Bonomi, M., Branduardi, D., Bussi, G., Camilloni, C., Provasi, D., Raiteri, P., Donadio, D., Marinelli, F., Pietrucci, F., Broglia, R. A. et al. (2009) PLUMED: A portable plugin for free-energy calculations with molecular dynamics. Comput. Phys. Commun., 180, 1961-1972.
-
(2009)
Comput. Phys. Commun.
, vol.180
, pp. 1961-1972
-
-
Bonomi, M.1
Branduardi, D.2
Bussi, G.3
Camilloni, C.4
Provasi, D.5
Raiteri, P.6
Donadio, D.7
Marinelli, F.8
Pietrucci, F.9
Broglia, R.A.10
-
53
-
-
0004016501
-
Comparison of simple potential functions for simulating liquid water
-
Jorgensen, W. L., Chandrasekhar, J., Madura, J. D., Impey, R. W., Klein, M. L. (1983) Comparison of simple potential functions for simulating liquid water. J. Chem. Phys., 79, 926.
-
(1983)
J. Chem. Phys.
, vol.79
, pp. 926
-
-
Jorgensen, W.L.1
Chandrasekhar, J.2
Madura, J.D.3
Impey, R.W.4
Klein, M.L.5
-
54
-
-
3142714765
-
Extending the treatment of backbone energetics in protein force fields: Limitations of gas-phase quantum mechanics in reproducing protein conformational distributions in molecular dynamics simulations
-
Mackerell, A. D., Feig, M., Brooks, C. L. (2004) Extending the treatment of backbone energetics in protein force fields: Limitations of gas-phase quantum mechanics in reproducing protein conformational distributions in molecular dynamics simulations. J. Comput. Chem., 25, 1400-1415.
-
(2004)
J. Comput. Chem.
, vol.25
, pp. 1400-1415
-
-
Mackerell, A.D.1
Feig, M.2
Brooks, C.L.3
-
55
-
-
0000214231
-
All atom empirical force field for nucleic acids: II. Application to molecular dynamics simulations of DNA and RNA in solution
-
Mackerell, A. D., Banavali, N. K. (2000) All atom empirical force field for nucleic acids: II. Application to molecular dynamics simulations of DNA and RNA in solution. J. Comp. Chem., 21, 105-120.
-
(2000)
J. Comp. Chem.
, vol.21
, pp. 105-120
-
-
Mackerell, A.D.1
Banavali, N.K.2
-
56
-
-
84892597525
-
Taking into account the ion-induced dipole interaction in the nonbonded model of ions
-
Li, P., Merz, K. M. (2014) Taking into account the ion-induced dipole interaction in the nonbonded model of ions. J. Chem. Theory Comput., 10, 289-297.
-
(2014)
J. Chem. Theory Comput.
, vol.10
, pp. 289-297
-
-
Li, P.1
Merz, K.M.2
-
57
-
-
79959720287
-
How robust are protein folding simulations with respect to force field parameterization
-
Piana, S., Lindorff-Larsen, K., Shaw, D. E. (2011) How robust are protein folding simulations with respect to force field parameterization Biophys. J., 100, L47-L49.
-
(2011)
Biophys. J.
, vol.100
, pp. L47-L49
-
-
Piana, S.1
Lindorff-Larsen, K.2
Shaw, D.E.3
-
58
-
-
73949097915
-
Automated event detection and activity monitoring in long molecular dynamics simulations
-
Wriggers, W., Stafford, K. A., Shan, Y., Piana, S., Maragakis, P., Lindorff-Larsen, K., Miller, P. J., Gullingsrud, J., Rendleman, C. A., Eastwood, M. P. et al. (2009) Automated event detection and activity monitoring in long molecular dynamics simulations. J. Chem. Theory Comput., 5, 2595-2605.
-
(2009)
J. Chem. Theory Comput.
, vol.5
, pp. 2595-2605
-
-
Wriggers, W.1
Stafford, K.A.2
Shan, Y.3
Piana, S.4
Maragakis, P.5
Lindorff-Larsen, K.6
Miller, P.J.7
Gullingsrud, J.8
Rendleman, C.A.9
Eastwood, M.P.10
-
59
-
-
67650477115
-
Reconstructing the equilibrium boltzmann distribution from well-tempered metadynamics
-
Bonomi, M., Barducci, A., Parrinello, M. (2009) Reconstructing the equilibrium boltzmann distribution from well-tempered metadynamics. J. Comp. Chem., 30, 1615-1621.
-
(2009)
J. Comp. Chem.
, vol.30
, pp. 1615-1621
-
-
Bonomi, M.1
Barducci, A.2
Parrinello, M.3
-
60
-
-
79953726279
-
Conserved amino acids participate in the structure networks deputed to intramolecular communication in the lutropin receptor
-
Angelova, K., Felline, A., Lee, M., Patel, M., Puett, D., Fanelli, F. (2011) Conserved amino acids participate in the structure networks deputed to intramolecular communication in the lutropin receptor. Cell. Mol. Life Sci., 68, 1227-1239.
-
(2011)
Cell. Mol. Life Sci.
, vol.68
, pp. 1227-1239
-
-
Angelova, K.1
Felline, A.2
Lee, M.3
Patel, M.4
Puett, D.5
Fanelli, F.6
-
61
-
-
84907572373
-
Communication routes in ARID domains between distal residues in Helix 5 and the DNA-binding Loops
-
Invernizzi, G., Tiberti, M., Lambrughi, M., Lindorff-Larsen, K., Papaleo, E. (2014) Communication routes in ARID domains between distal residues in Helix 5 and the DNA-binding Loops. PLoS Comput. Biol., 10, e1003744.
-
(2014)
PLoS Comput. Biol.
, vol.10
, pp. e1003744
-
-
Invernizzi, G.1
Tiberti, M.2
Lambrughi, M.3
Lindorff-Larsen, K.4
Papaleo, E.5
-
62
-
-
79952498871
-
Wordom: A user-friendly program for the analysis of molecular structures, trajectories, free energy surfaces
-
Seeber, M., Felline, A., Raimondi, F., Muff, S., Friedman, R., Rao, F., Caflisch, A., Fanelli, F. (2011) Wordom: A user-friendly program for the analysis of molecular structures, trajectories, free energy surfaces. J. Comput. Chem., 32, 1183-1194.
-
(2011)
J. Comput. Chem.
, vol.32
, pp. 1183-1194
-
-
Seeber, M.1
Felline, A.2
Raimondi, F.3
Muff, S.4
Friedman, R.5
Rao, F.6
Caflisch, A.7
Fanelli, F.8
-
63
-
-
84901620405
-
XPyder: A PyMOL plugin to analyze coupled residues and their networks in protein structures
-
Pasi, M., Tiberti, M., Arrigoni, A., Papaleo, E. (2012) xPyder: A PyMOL plugin to analyze coupled residues and their networks in protein structures. J. Chem. Inf. Model., 279, 1-6.
-
(2012)
J. Chem. Inf. Model.
, vol.279
, pp. 1-6
-
-
Pasi, M.1
Tiberti, M.2
Arrigoni, A.3
Papaleo, E.4
-
64
-
-
80052411919
-
Predicting protein-protein interactions on a proteome scale by matching evolutionary and structural similarities at interfaces using PRISM
-
Tuncbag, N., Gursoy, A., Nussinov, R., Keskin, O. (2011) Predicting protein-protein interactions on a proteome scale by matching evolutionary and structural similarities at interfaces using PRISM. Nat. Protoc., 6, 1341-1354.
-
(2011)
Nat. Protoc.
, vol.6
, pp. 1341-1354
-
-
Tuncbag, N.1
Gursoy, A.2
Nussinov, R.3
Keskin, O.4
-
65
-
-
84904801952
-
PRISM: A web server and repository for prediction of protein-protein interactions and modeling their 3D complexes
-
Baspinar, A., Cukuroglu, E., Nussinov, R., Keskin, O., Gursoy, A. (2014) PRISM: A web server and repository for prediction of protein-protein interactions and modeling their 3D complexes. Nucleic Acids Res., 42, W285-W289.
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. W285-W289
-
-
Baspinar, A.1
Cukuroglu, E.2
Nussinov, R.3
Keskin, O.4
Gursoy, A.5
-
66
-
-
84879327937
-
Exploiting conformational ensembles in modeling protein-protein interactions on the proteome scale
-
Kuzu, G., Gursoy, A., Nussinov, R., Keskin, O. (2014) Exploiting conformational ensembles in modeling protein-protein interactions on the proteome scale. J. Proteome Res., 12, 2641-2653.
-
(2014)
J. Proteome Res.
, vol.12
, pp. 2641-2653
-
-
Kuzu, G.1
Gursoy, A.2
Nussinov, R.3
Keskin, O.4
-
67
-
-
79954608309
-
New benchmark metrics for protein-protein docking methods
-
Gao, M., Skolnick, J. (2011) New benchmark metrics for protein-protein docking methods. Proteins, 79, 1623-1634.
-
(2011)
Proteins
, vol.79
, pp. 1623-1634
-
-
Gao, M.1
Skolnick, J.2
-
68
-
-
84862636275
-
Mutant p53: One name, many proteins
-
Freed-pastor, W. A., Prives, C. (2012) Mutant p53: One name, many proteins. Genes Dev., 26, 1268-1286.
-
(2012)
Genes Dev.
, vol.26
, pp. 1268-1286
-
-
Freed-Pastor, W.A.1
Prives, C.2
-
69
-
-
0027771333
-
The DNA-binding domain of 53 contains the four conserved regions the major mutation hot spots
-
Pavletich, N. P., Chambers, K. A., Pabo, C. O. (1993) The DNA-binding domain of 53 contains the four conserved regions the major mutation hot spots. Genes Dev., 7, 2556-2564.
-
(1993)
Genes Dev.
, vol.7
, pp. 2556-2564
-
-
Pavletich, N.P.1
Chambers, K.A.2
Pabo, C.O.3
-
70
-
-
84867216105
-
Event detection and sub-state discovery from biomolecular simulations using higher-order statistics: Application to enzyme adenylate kinase
-
Ramanathan, A., Savol, A. J., Agarwal, P. K., Chennubhotla, C. S. (2012) Event detection and sub-state discovery from biomolecular simulations using higher-order statistics: Application to enzyme adenylate kinase. Proteins, 80, 2536-2551.
-
(2012)
Proteins
, vol.80
, pp. 2536-2551
-
-
Ramanathan, A.1
Savol, A.J.2
Agarwal, P.K.3
Chennubhotla, C.S.4
-
71
-
-
79959484231
-
QAARM: Quasi-anharmonic autoregressive model reveals molecular recognition pathways in ubiquitin
-
Savol, A. J., Burger, V. M., Agarwal, P. K., Ramanathan, A., Chennubhotla, C. S. (2011) QAARM: Quasi-anharmonic autoregressive model reveals molecular recognition pathways in ubiquitin. Bioinformatics, 27, i52-i60.
-
(2011)
Bioinformatics
, vol.27
, pp. i52-i60
-
-
Savol, A.J.1
Burger, V.M.2
Agarwal, P.K.3
Ramanathan, A.4
Chennubhotla, C.S.5
-
72
-
-
84926376422
-
Comparing molecular dynamics force fields in the essential subspace
-
Mart-Garc, F., Papaleo, E., Gomez-Puertas, P., Boomsma, W., Lindorff-Larsen, K. (2015) Comparing molecular dynamics force fields in the essential subspace. PLoS One, 10, e0121114.
-
(2015)
PLoS One
, vol.10
, pp. e0121114
-
-
Mart-Garc, F.1
Papaleo, E.2
Gomez-Puertas, P.3
Boomsma, W.4
Lindorff-Larsen, K.5
-
73
-
-
84884831789
-
Molecular dynamics of the full-length p53 monomer
-
Chillemi, G., Davidovich, P., D'Abramo, M., Mametnabiev, T., Garabadzhiu, A. V., Desideri, A., Melino, G. (2013) Molecular dynamics of the full-length p53 monomer. Cell Cycle, 12, 3098-3108.
-
(2013)
Cell Cycle
, vol.12
, pp. 3098-3108
-
-
Chillemi, G.1
Davidovich, P.2
D'Abramo, M.3
Mametnabiev, T.4
Garabadzhiu, A.V.5
Desideri, A.6
Melino, G.7
-
74
-
-
73949127938
-
Multiple conformations of full-length p53 detected with single-molecule fluorescence resonance energy transfer
-
Huang, F., Rajagopalan, S., Settanni, G., Marsh, R. J., Armoogum, D. A., Nicolaou, N., Bain, A. J., Lerner, E., Haas, E., Ying, L. et al. (2009) Multiple conformations of full-length p53 detected with single-molecule fluorescence resonance energy transfer. Proc. Natl. Acad. Sci. U. S. A., 106, 20758-20763.
-
(2009)
Proc. Natl. Acad. Sci. U. S. A.
, vol.106
, pp. 20758-20763
-
-
Huang, F.1
Rajagopalan, S.2
Settanni, G.3
Marsh, R.J.4
Armoogum, D.A.5
Nicolaou, N.6
Bain, A.J.7
Lerner, E.8
Haas, E.9
Ying, L.10
-
75
-
-
84055190755
-
Aurora A mediates cross-talk between N-and C-terminal post-translational modifications of p53
-
Warnock, L. J., Raines, S. A., Milner, J. (2011) Aurora A mediates cross-talk between N-and C-terminal post-translational modifications of p53. Cancer Biol. Ther., 12, 1059-1068.
-
(2011)
Cancer Biol. Ther.
, vol.12
, pp. 1059-1068
-
-
Warnock, L.J.1
Raines, S.A.2
Milner, J.3
-
76
-
-
84868198915
-
PPM: A side-chain and backbone chemical shift predictor for the assessment of protein conformational ensembles
-
Li, D.-W., Brschweiler, R. (2012) PPM: A side-chain and backbone chemical shift predictor for the assessment of protein conformational ensembles. J. Biomol. NMR, 54, 257-265.
-
(2012)
J. Biomol. NMR
, vol.54
, pp. 257-265
-
-
Li, D.-W.1
Brschweiler, R.2
-
77
-
-
33746002633
-
Structure of the p53 core domain dimer bound to DNA
-
Ho, W. C., Fitzgerald, M. X., Marmorstein, R. (2006) Structure of the p53 core domain dimer bound to DNA. J. Biol. Chem., 281, 20494-20502.
-
(2006)
J. Biol. Chem.
, vol.281
, pp. 20494-20502
-
-
Ho, W.C.1
Fitzgerald, M.X.2
Marmorstein, R.3
-
78
-
-
0030575866
-
Structure of the p53 tumor suppressor bound to the ankyrin and SH3 domains of 53BP2
-
Gorina, S., Pavletich, N. P. (1996) Structure of the p53 tumor suppressor bound to the ankyrin and SH3 domains of 53BP2. Science, 274, 1001-1005.
-
(1996)
Science
, vol.274
, pp. 1001-1005
-
-
Gorina, S.1
Pavletich, N.P.2
-
79
-
-
0032776303
-
Molecular interaction map of the mammalian cell cycle control and DNA repair systems
-
Kohn, K. W. (1999) Molecular interaction map of the mammalian cell cycle control and DNA repair systems. Mol. Biol. Cell, 10, 2703-2734.
-
(1999)
Mol. Biol. Cell
, vol.10
, pp. 2703-2734
-
-
Kohn, K.W.1
-
80
-
-
84882840365
-
Signaling to the p53 tumor suppressor through pathways activated by genotoxic and non-genotoxic stresses
-
erson, C., Appella, E. (2009) Signaling to the p53 tumor suppressor through pathways activated by genotoxic and non-genotoxic stresses. Handb. Cell Signal., 264, 2185-2203.
-
(2009)
Handb. Cell Signal.
, vol.264
, pp. 2185-2203
-
-
Erson, C.1
Appella, E.2
-
81
-
-
84860918589
-
MINT, the molecular interaction database: 2012 update
-
Licata, L., Briganti, L., Peluso, D., Perfetto, L., Iannuccelli, M., Galeota, E., Sacco, F., Palma, A., Nardozza, A. P., Santonico, E. et al. (2012) MINT, the molecular interaction database: 2012 update. Nucleic Acids Res., 40, D857-D861.
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. D857-D861
-
-
Licata, L.1
Briganti, L.2
Peluso, D.3
Perfetto, L.4
Iannuccelli, M.5
Galeota, E.6
Sacco, F.7
Palma, A.8
Nardozza, A.P.9
Santonico, E.10
-
82
-
-
38949123716
-
Biochemical and structural studies of ASPP proteins reveal differential binding to p53, p63, p73
-
Robinson, R., Lu, X., Jones, E., Siebold, C. (2008) Biochemical and structural studies of ASPP proteins reveal differential binding to p53, p63, p73. Structure, 16, 259-268.
-
(2008)
Structure
, vol.16
, pp. 259-268
-
-
Robinson, R.1
Lu, X.2
Jones, E.3
Siebold, C.4
-
83
-
-
33748250439
-
Crystal structure of SV40 large T-antigen bound to p53: Interplay between a viral oncoprotein and a cellular tumor suppressor
-
Lilyestrom, W., Klein, M. G., Zhang, R., Joachimiak, A., Chen, X. S. (2006) Crystal structure of SV40 large T-antigen bound to p53: Interplay between a viral oncoprotein and a cellular tumor suppressor. Genes Dev., 20, 2373-2382.
-
(2006)
Genes Dev.
, vol.20
, pp. 2373-2382
-
-
Lilyestrom, W.1
Klein, M.G.2
Zhang, R.3
Joachimiak, A.4
Chen, X.S.5
-
84
-
-
0037099666
-
Crystal structure of human 53BP1 BRCT domains bound to p53 tumour suppressor
-
Derbyshire, D. J., Basu, B. P., Serpell, L. C., Joo, W. S., Date, T., Iwabuchi, K., Doherty, A. J. (2002) Crystal structure of human 53BP1 BRCT domains bound to p53 tumour suppressor. EMBO J., 21, 3863-3872.
-
(2002)
EMBO J.
, vol.21
, pp. 3863-3872
-
-
Derbyshire, D.J.1
Basu, B.P.2
Serpell, L.C.3
Joo, W.S.4
Date, T.5
Iwabuchi, K.6
Doherty, A.J.7
-
85
-
-
78549274413
-
A novel p53 phosphorylation site within the MDM2 ubiquitination signal: I. Phosphorylation at SER269 in vivo is linked to inactivation of p53 function
-
Fraser, J. a, Vojtesek, B., Hupp, T. R. (2010) A novel p53 phosphorylation site within the MDM2 ubiquitination signal: I. phosphorylation at SER269 in vivo is linked to inactivation of p53 function. J. Biol. Chem., 285, 37762-37772.
-
(2010)
J. Biol. Chem.
, vol.285
, pp. 37762-37772
-
-
Fraser, J.A.1
Vojtesek, B.2
Hupp, T.R.3
-
86
-
-
0028070989
-
P53-dependent apoptosis in the absence of transcriptional activation of p53-target genes
-
Caelles, C., Helmberg, A., Karin, M. (1994) p53-dependent apoptosis in the absence of transcriptional activation of p53-target genes. Nature, 370, 220-223.
-
(1994)
Nature
, vol.370
, pp. 220-223
-
-
Caelles, C.1
Helmberg, A.2
Karin, M.3
-
87
-
-
66449099052
-
P53 acetylation is crucial for its transcription-independent proapoptotic functions
-
Yamaguchi, H., Woods, N. T., Piluso, L. G., Lee, H.-H., Chen, J., Bhalla, K. N., Monteiro, A., Liu, X., Hung, M.-C., Wang, H.-G. (2009) p53 acetylation is crucial for its transcription-independent proapoptotic functions. J. Biol. Chem., 284, 11171-11183.
-
(2009)
J. Biol. Chem.
, vol.284
, pp. 11171-11183
-
-
Yamaguchi, H.1
Woods, N.T.2
Piluso, L.G.3
Lee, H.-H.4
Chen, J.5
Bhalla, K.N.6
Monteiro, A.7
Liu, X.8
Hung, M.-C.9
Wang, H.-G.10
-
88
-
-
0037385609
-
Ku70 suppresses the apoptotic translocation of Bax to mitochondria
-
Sawada, M., Sun, W., Hayes, P., Leskov, K., Boothman, D. A., Matsuyama, S. (2003) Ku70 suppresses the apoptotic translocation of Bax to mitochondria. Nat. Cell Biol., 5, 320-329.
-
(2003)
Nat. Cell Biol.
, vol.5
, pp. 320-329
-
-
Sawada, M.1
Sun, W.2
Hayes, P.3
Leskov, K.4
Boothman, D.A.5
Matsuyama, S.6
-
89
-
-
72549085096
-
Transcription-independent p53 apoptosis: An alternative route to death
-
Speidel, D. (2010) Transcription-independent p53 apoptosis: an alternative route to death. Trends Cell Biol., 20, 14-24.
-
(2010)
Trends Cell Biol.
, vol.20
, pp. 14-24
-
-
Speidel, D.1
-
90
-
-
84921399056
-
A nanobody modulates the p53 transcriptional program without perturbing its functional architecture
-
Bethuyne, J., De Gieter, S., Zwaenepoel, O., Garcia-pino, A., Durinck, K., Verhelle, A., Hassanzadeh-ghassabeh, G., Speleman, F., Loris, R., Gettemans, J. (2014) A nanobody modulates the p53 transcriptional program without perturbing its functional architecture. Nucleic Acids Res., 42, 12928-12938.
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. 12928-12938
-
-
Bethuyne, J.1
De Gieter, S.2
Zwaenepoel, O.3
Garcia-Pino, A.4
Durinck, K.5
Verhelle, A.6
Hassanzadeh-Ghassabeh, G.7
Speleman, F.8
Loris, R.9
Gettemans, J.10
-
91
-
-
33947304781
-
Structure of the human p53 core domain in the absence of DNA
-
Wang, Y., Rosengarth, A., Luecke, H. (2007) Structure of the human p53 core domain in the absence of DNA. Acta Crystallogr. D. Biol. Crystallogr., 63, 276-281.
-
(2007)
Acta Crystallogr. D. Biol. Crystallogr.
, vol.63
, pp. 276-281
-
-
Wang, Y.1
Rosengarth, A.2
Luecke, H.3
-
92
-
-
84949224551
-
Exploiting transient protein states for the design of article exploiting transient protein states for the design of small-molecule stabilizers of mutant p53
-
Joerger, A. C., Bauer, M. R., Wilcken, R., Boeckler, F. M., Spencer, J., Fersht, A. R. (2015) Exploiting transient protein states for the design of article exploiting transient protein states for the design of small-molecule stabilizers of mutant p53. Structure, 23, 2246-2255.
-
(2015)
Structure
, vol.23
, pp. 2246-2255
-
-
Joerger, A.C.1
Bauer, M.R.2
Wilcken, R.3
Boeckler, F.M.4
Spencer, J.5
Fersht, A.R.6
-
93
-
-
44449116120
-
Structure of tumor suppressor p53 and its intrinsically disordered N-terminal transactivation domain
-
Wells, M., Tidow, H., Rutherford, T. J., Markwick, P., Jensen, M. R., Mylonas, E., Svergun, D. I., Blackledge, M., Fersht, A. R. (2008) Structure of tumor suppressor p53 and its intrinsically disordered N-terminal transactivation domain. Proc. Natl. Acad. Sci. U. S. A., 105, 5762-5767.
-
(2008)
Proc. Natl. Acad. Sci. U. S. A.
, vol.105
, pp. 5762-5767
-
-
Wells, M.1
Tidow, H.2
Rutherford, T.J.3
Markwick, P.4
Jensen, M.R.5
Mylonas, E.6
Svergun, D.I.7
Blackledge, M.8
Fersht, A.R.9
-
94
-
-
84894037293
-
The impact of R213 mutation on p53-mediated p21 activity
-
Zhang, Y., Zhang, Y., Zhao, H., Zhai, Q., Zhang, Y., Shen, Y. (2014) The impact of R213 mutation on p53-mediated p21 activity. Biochimie, 99, 215-218.
-
(2014)
Biochimie
, vol.99
, pp. 215-218
-
-
Zhang, Y.1
Zhang, Y.2
Zhao, H.3
Zhai, Q.4
Zhang, Y.5
Shen, Y.6
-
95
-
-
0034702250
-
Identification of a tumor-derived p53 mutant with novel transactivating selectivity
-
Pan, Y., Haines, D. S. (2000) Identification of a tumor-derived p53 mutant with novel transactivating selectivity. Oncogene, 19, 3095-3100.
-
(2000)
Oncogene
, vol.19
, pp. 3095-3100
-
-
Pan, Y.1
Haines, D.S.2
-
96
-
-
84901593833
-
PyInteraph: A framework for the analysis of interaction networks in structural ensembles of proteins
-
Tiberti, M., Invernizzi, G., Lambrughi, M., Inbar, Y., Schreiber, G., Papaleo, E. (2014) PyInteraph: A framework for the analysis of interaction networks in structural ensembles of proteins. J. Chem. Inf. Model., 54, 1537-1551.
-
(2014)
J. Chem. Inf. Model.
, vol.54
, pp. 1537-1551
-
-
Tiberti, M.1
Invernizzi, G.2
Lambrughi, M.3
Inbar, Y.4
Schreiber, G.5
Papaleo, E.6
-
97
-
-
0035833552
-
Structure of the Ku heterodimer bound to DNA and its implications for double-strand break repair
-
Walker, J. R., Corpina, R. A., Goldberg, J. (2001) Structure of the Ku heterodimer bound to DNA and its implications for double-strand break repair. Nature, 412, 607-614.
-
(2001)
Nature
, vol.412
, pp. 607-614
-
-
Walker, J.R.1
Corpina, R.A.2
Goldberg, J.3
-
98
-
-
0037044846
-
Crystal structure of Aurora-2, an Oncogenic Serine/Threonine Kinase
-
Cheetham, G. M. T., Knegtel, R. M. A., Coll, J. T., Renwick, S. B., Swenson, L., Weber, P., Lippke, J. A., Austen, D. A. (2002) Crystal structure of Aurora-2, an Oncogenic Serine/Threonine Kinase. J. Biol. Chem., 277, 42419-42423.
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 42419-42423
-
-
Cheetham, G.M.T.1
Knegtel, R.M.A.2
Coll, J.T.3
Renwick, S.B.4
Swenson, L.5
Weber, P.6
Lippke, J.A.7
Austen, D.A.8
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