메뉴 건너뛰기




Volumn 12, Issue 7, 2016, Pages

Context Specific and Differential Gene Co-expression Networks via Bayesian Biclustering

Author keywords

[No Author keywords available]

Indexed keywords

BAYESIAN NETWORKS; ENCODING (SYMBOLS); GENE EXPRESSION; RECOVERY;

EID: 84979971912     PISSN: 1553734X     EISSN: 15537358     Source Type: Journal    
DOI: 10.1371/journal.pcbi.1004791     Document Type: Article
Times cited : (51)

References (117)
  • 1
    • 77949365759 scopus 로고    scopus 로고
    • Identification of functional modules that correlate with phenotypic difference: The influence of network topology
    • 20187943
    • Hung JH, Whitfield TW, Yang TH, Hu Z, Weng Z, et al. (2010) Identification of functional modules that correlate with phenotypic difference: The influence of network topology. Genome Biology11: R23. doi: 10.1186/gb-2010-11-2-r2320187943
    • (2010) Genome Biology , vol.11 , pp. R23
    • Hung, J.H.1    Whitfield, T.W.2    Yang, T.H.3    Hu, Z.4    Weng, Z.5
  • 2
    • 76949089586 scopus 로고    scopus 로고
    • Searching for functional gene modules with interaction component models
    • ().:–
    • Parkkinen JA, Kaski S, (2010) Searching for functional gene modules with interaction component models. BMC Systems Biology4: 1–11. doi: 10.1186/1752-0509-4-4
    • (2010) BMC Systems Biology , vol.4 , pp. 1-11
    • Parkkinen, J.A.1    Kaski, S.2
  • 8
    • 45849093636 scopus 로고    scopus 로고
    • Boolean network model predicts cell cycle sequence of fission yeast
    • 18301750, ().:
    • Davidich MI, Bornholdt S, (2008) Boolean network model predicts cell cycle sequence of fission yeast. PLoS ONE3: e1672. doi: 10.1371/journal.pone.000167218301750
    • (2008) PLoS ONE , vol.3 , pp. e1672
    • Davidich, M.I.1    Bornholdt, S.2
  • 9
    • 79953886457 scopus 로고    scopus 로고
    • Gene regulatory networks and the role of robustness and stochasticity in the control of gene expression
    • 21324878, ().:–
    • MacNeil LT, Walhout AJM, (2011) Gene regulatory networks and the role of robustness and stochasticity in the control of gene expression. Genome Research21: 645–657. doi: 10.1101/gr.097378.10921324878
    • (2011) Genome Research , vol.21 , pp. 645-657
    • MacNeil, L.T.1    Walhout, A.J.M.2
  • 10
    • 52649087274 scopus 로고    scopus 로고
    • Modelling and analysis of gene regulatory networks
    • 18797474, ().:–
    • Karlebach G, Shamir R, (2008) Modelling and analysis of gene regulatory networks. Nature Reviews Molecular Cell Biology9: 770–780. doi: 10.1038/nrm250318797474
    • (2008) Nature Reviews Molecular Cell Biology , vol.9 , pp. 770-780
    • Karlebach, G.1    Shamir, R.2
  • 12
    • 33747813561 scopus 로고    scopus 로고
    • The Inferelator: An algorithm for learning parsimonious regulatory networks from systems-biology data sets de novo
    • 16686963, . ().:
    • Bonneau R, Reiss DJ, Shannon P, Facciotti M, Hood L, et al. (2006) The Inferelator: An algorithm for learning parsimonious regulatory networks from systems-biology data sets de novo. Genome Biology7: R36. doi: 10.1186/gb-2006-7-5-r3616686963
    • (2006) Genome Biology , vol.7 , pp. R36
    • Bonneau, R.1    Reiss, D.J.2    Shannon, P.3    Facciotti, M.4    Hood, L.5
  • 13
    • 77649168721 scopus 로고    scopus 로고
    • A general co-expression network-based approach to gene expression analysis: comparison and applications
    • 20122284, ().:
    • Ruan J, Dean AK, Zhang W, (2010) A general co-expression network-based approach to gene expression analysis: comparison and applications. BMC Systems Biology4: 8. doi: 10.1186/1752-0509-4-820122284
    • (2010) BMC Systems Biology , vol.4 , pp. 8
    • Ruan, J.1    Dean, A.K.2    Zhang, W.3
  • 14
    • 84878605343 scopus 로고    scopus 로고
    • Passing messages between biological networks to refine predicted interactions
    • 23741402, ().:
    • Glass K, Huttenhower C, Quackenbush J, Yuan GC, (2013) Passing messages between biological networks to refine predicted interactions. PLoS ONE8: e64832. doi: 10.1371/journal.pone.006483223741402
    • (2013) PLoS ONE , vol.8 , pp. e64832
    • Glass, K.1    Huttenhower, C.2    Quackenbush, J.3    Yuan, G.C.4
  • 15
    • 78049415423 scopus 로고    scopus 로고
    • Analysis of population structure: A unifying framework and novel methods based on sparse factor analysis
    • 20862358, ().:
    • Engelhardt B, Stephens M, (2010) Analysis of population structure: A unifying framework and novel methods based on sparse factor analysis. PLoS Genetics6: e1001117. doi: 10.1371/journal.pgen.100111720862358
    • (2010) PLoS Genetics , vol.6 , pp. e1001117
    • Engelhardt, B.1    Stephens, M.2
  • 16
    • 62549125109 scopus 로고    scopus 로고
    • High-dimensional sparse factor modelling: Applications in gene expression genomics
    • 21218139, . ().:–
    • Carvalho CM, Lucas JE, Wang Q, Chang J, Nevins JR, et al. (2008) High-dimensional sparse factor modelling: Applications in gene expression genomics. Journal of the American Statistical Association103: 1438–1456. doi: 10.1198/01621450800000086921218139
    • (2008) Journal of the American Statistical Association , vol.103 , pp. 1438-1456
    • Carvalho, C.M.1    Lucas, J.E.2    Wang, Q.3    Chang, J.4    Nevins, J.R.5
  • 17
    • 0242295767 scopus 로고    scopus 로고
    • Bayesian factor regression models in the “large p, small n” paradigm
    • ().:–
    • West M, (2003) Bayesian factor regression models in the “large p, small n” paradigm. Bayesian Statistics7: 723–732.
    • (2003) Bayesian Statistics , vol.7 , pp. 723-732
    • West, M.1
  • 18
    • 79957827711 scopus 로고    scopus 로고
    • Sparse Bayesian infinite factor models
    • 23049129, ().:–
    • Bhattacharya A, Dunson DB, (2011) Sparse Bayesian infinite factor models. Biometrika98: 291–306. doi: 10.1093/biomet/asr01323049129
    • (2011) Biometrika , vol.98 , pp. 291-306
    • Bhattacharya, A.1    Dunson, D.B.2
  • 19
    • 33846978695 scopus 로고    scopus 로고
    • Relative impact of nucleotide and copy number variation on gene expression phenotypes
    • 17289997, . ().:–
    • Stranger BE, Forrest MS, Dunning M, Ingle CE, Beazley C, et al. (2007) Relative impact of nucleotide and copy number variation on gene expression phenotypes. Science315: 848–853. doi: 10.1126/science.113667817289997
    • (2007) Science , vol.315 , pp. 848-853
    • Stranger, B.E.1    Forrest, M.S.2    Dunning, M.3    Ingle, C.E.4    Beazley, C.5
  • 20
    • 84884611024 scopus 로고    scopus 로고
    • Integrative modeling of eQTLs and cis-regulatory elements suggests mechanisms underlying cell type specificity of eQTLs
    • 23935528, ().:
    • Brown CD, Mangravite LM, Engelhardt BE, (2013) Integrative modeling of eQTLs and cis-regulatory elements suggests mechanisms underlying cell type specificity of eQTLs. PLoS Genetics9: e1003649. doi: 10.1371/journal.pgen.100364923935528
    • (2013) PLoS Genetics , vol.9 , pp. e1003649
    • Brown, C.D.1    Mangravite, L.M.2    Engelhardt, B.E.3
  • 21
    • 70149096300 scopus 로고    scopus 로고
    • A penalized matrix decomposition, with applications to sparse principal components and canonical correlation analysis
    • 19377034, ().:–
    • Witten DM, Tibshirani R, Hastie T, (2009) A penalized matrix decomposition, with applications to sparse principal components and canonical correlation analysis. Biostatistics10: 515–534. doi: 10.1093/biostatistics/kxp00819377034
    • (2009) Biostatistics , vol.10 , pp. 515-534
    • Witten, D.M.1    Tibshirani, R.2    Hastie, T.3
  • 24
    • 0242690489 scopus 로고    scopus 로고
    • Discovering local structure in gene expression data: The order-preserving submatrix problem
    • 12935334, ().:–
    • Ben-Dor A, Chor B, Karp R, Yakhini Z, (2003) Discovering local structure in gene expression data: The order-preserving submatrix problem. Journal of Computational Biology10: 373–384. doi: 10.1089/1066527036068807512935334
    • (2003) Journal of Computational Biology , vol.10 , pp. 373-384
    • Ben-Dor, A.1    Chor, B.2    Karp, R.3    Yakhini, Z.4
  • 26
    • 69849086336 scopus 로고    scopus 로고
    • QUBIC: A qualitative biclustering algorithm for analyses of gene expression data
    • 19509312, ().:–
    • Li G, Ma Q, Tang H, Paterson AH, Xu Y, (2009) QUBIC: A qualitative biclustering algorithm for analyses of gene expression data. Nucleic Acids Research37: e101–e101. doi: 10.1093/nar/gkp49119509312
    • (2009) Nucleic Acids Research , vol.37 , pp. e101-e101
    • Li, G.1    Ma, Q.2    Tang, H.3    Paterson, A.H.4    Xu, Y.5
  • 27
    • 33646137384 scopus 로고    scopus 로고
    • A systematic comparison and evaluation of biclustering methods for gene expression data
    • 16500941, . ().:–
    • Prelic A, Bleuler S, Zimmermann P, Wille A, Bühlmann P, et al. (2006) A systematic comparison and evaluation of biclustering methods for gene expression data. Bioinformatics22: 1122–1129. doi: 10.1093/bioinformatics/btl06016500941
    • (2006) Bioinformatics , vol.22 , pp. 1122-1129
    • Prelic, A.1    Bleuler, S.2    Zimmermann, P.3    Wille, A.4    Bühlmann, P.5
  • 29
    • 75849134576 scopus 로고    scopus 로고
    • Detailing regulatory networks through large scale data integration
    • 19825796, . ().:–
    • Huttenhower C, Mutungu KT, Indik N, Yang W, Schroeder M, et al. (2009) Detailing regulatory networks through large scale data integration. Bioinformatics25: 3267–3274. doi: 10.1093/bioinformatics/btp58819825796
    • (2009) Bioinformatics , vol.25 , pp. 3267-3274
    • Huttenhower, C.1    Mutungu, K.T.2    Indik, N.3    Yang, W.4    Schroeder, M.5
  • 30
    • 0036012349 scopus 로고    scopus 로고
    • Plaid models for gene expression data
    • ().:–
    • Lazzeroni L, Owen A, (2000) Plaid models for gene expression data. Statistica Sinica12: 61–86.
    • (2000) Statistica Sinica , vol.12 , pp. 61-86
    • Lazzeroni, L.1    Owen, A.2
  • 31
    • 44449136102 scopus 로고    scopus 로고
    • Bayesian biclustering of gene expression data
    • 18366617, ().:
    • Gu J, Liu JS, (2008) Bayesian biclustering of gene expression data. BMC Genomics9: S4. doi: 10.1186/1471-2164-9-S1-S418366617
    • (2008) BMC Genomics , vol.9 , pp. S4
    • Gu, J.1    Liu, J.S.2
  • 33
    • 77954206273 scopus 로고    scopus 로고
    • FABIA: Factor analysis for bicluster acquisition
    • 20418340, . ().:–
    • Hochreiter S, Bodenhofer U, Heusel M, Mayr A, Mitterecker A, et al. (2010) FABIA: Factor analysis for bicluster acquisition. Bioinformatics26: 1520–1527. doi: 10.1093/bioinformatics/btq22720418340
    • (2010) Bioinformatics , vol.26 , pp. 1520-1527
    • Hochreiter, S.1    Bodenhofer, U.2    Heusel, M.3    Mayr, A.4    Mitterecker, A.5
  • 34
    • 0037399130 scopus 로고    scopus 로고
    • Spectral biclustering of microarray data: Coclustering genes and conditions
    • 12671006, ().:–
    • Kluger Y, Basri R, Chang JT, Gerstein M, (2003) Spectral biclustering of microarray data: Coclustering genes and conditions. Genome Research13: 703–716. doi: 10.1101/gr.64860312671006
    • (2003) Genome Research , vol.13 , pp. 703-716
    • Kluger, Y.1    Basri, R.2    Chang, J.T.3    Gerstein, M.4
  • 35
    • 27544440058 scopus 로고    scopus 로고
    • Shifting and scaling patterns from gene expression data
    • 16144809, ().:–
    • Aguilar-Ruiz JS, (2005) Shifting and scaling patterns from gene expression data. Bioinformatics21: 3840–3845. doi: 10.1093/bioinformatics/bti64116144809
    • (2005) Bioinformatics , vol.21 , pp. 3840-3845
    • Aguilar-Ruiz, J.S.1
  • 36
    • 34347341673 scopus 로고    scopus 로고
    • On the design and analysis of gene expression studies in human populations
    • ().:–
    • Storey JD, Akey JM, Biswas S, Leek JT, (2007) On the design and analysis of gene expression studies in human populations. Nature Genetics39: 808–809. doi: 10.1038/ng0707-808
    • (2007) Nature Genetics , vol.39 , pp. 808-809
    • Storey, J.D.1    Akey, J.M.2    Biswas, S.3    Leek, J.T.4
  • 37
    • 77956873627 scopus 로고    scopus 로고
    • Tackling the widespread and critical impact of batch effects in high-throughput data
    • 20838408, . ().:–
    • Leek JT, Scharpf RB, Bravo HC, Simcha D, Langmead B, et al. (2010) Tackling the widespread and critical impact of batch effects in high-throughput data. Nature Reviews Genetics11: 733–739. doi: 10.1038/nrg282520838408
    • (2010) Nature Reviews Genetics , vol.11 , pp. 733-739
    • Leek, J.T.1    Scharpf, R.B.2    Bravo, H.C.3    Simcha, D.4    Langmead, B.5
  • 38
    • 34848914038 scopus 로고    scopus 로고
    • Capturing heterogeneity in gene expression studies by surrogate variable analysis
    • ().:–
    • Leek J, Storey J, (2007) Capturing heterogeneity in gene expression studies by surrogate variable analysis. PLoS Genetics3: e161–1735. doi: 10.1371/journal.pgen.0030161
    • (2007) PLoS Genetics , vol.3 , pp. e161-1735
    • Leek, J.1    Storey, J.2
  • 39
    • 77950460661 scopus 로고    scopus 로고
    • Understanding mechanisms underlying human gene expression variation with RNA sequencing
    • 20220758, . ().:–
    • Pickrell JK, Marioni JC, Pai AA, Degner JF, Engelhardt BE, et al. (2010) Understanding mechanisms underlying human gene expression variation with RNA sequencing. Nature464: 768–772. doi: 10.1038/nature0887220220758
    • (2010) Nature , vol.464 , pp. 768-772
    • Pickrell, J.K.1    Marioni, J.C.2    Pai, A.A.3    Degner, J.F.4    Engelhardt, B.E.5
  • 40
    • 77955505742 scopus 로고    scopus 로고
    • A bayesian framework to account for complex non-genetic factors in gene expression levels greatly increases power in eqtl studies
    • 20463871, ().:
    • Stegle O, Parts L, Durbin R, Winn J, (2010) A bayesian framework to account for complex non-genetic factors in gene expression levels greatly increases power in eqtl studies. PLoS Computational Biology6: e1000770. doi: 10.1371/journal.pcbi.100077020463871
    • (2010) PLoS Computational Biology , vol.6 , pp. e1000770
    • Stegle, O.1    Parts, L.2    Durbin, R.3    Winn, J.4
  • 42
    • 84930607351 scopus 로고    scopus 로고
    • Sharing and specificity of co-expression networks across 35 human tissues
    • 25970446, . ().:
    • Pierson E, Koller D, Battle A, Mostafavi S, Consortium G, et al. (2015) Sharing and specificity of co-expression networks across 35 human tissues. PLOS Computational Biology11: e1004220. doi: 10.1371/journal.pcbi.100422025970446
    • (2015) PLOS Computational Biology , vol.11 , pp. e1004220
    • Pierson, E.1    Koller, D.2    Battle, A.3    Mostafavi, S.4    Consortium, G.5
  • 43
    • 18244409687 scopus 로고    scopus 로고
    • Gene expression profiling predicts clinical outcome of breast cancer
    • . ().:–
    • Van’t Veer LJ, Dai H, Van de Vijver MJ, He YD, Hart AAM, et al. (2002) Gene expression profiling predicts clinical outcome of breast cancer. Nature415: 530–536. doi: 10.1038/415530a
    • (2002) Nature , vol.415 , pp. 530-536
    • Van’t Veer, L.J.1    Dai, H.2    Van de Vijver, M.J.3    He, Y.D.4    Hart, A.A.M.5
  • 45
    • 84884611024 scopus 로고    scopus 로고
    • Integrative Modeling of eQTLs and Cis-Regulatory Elements Suggests Mechanisms Underlying Cell Type Specificity of eQTLs
    • 23935528, ().:
    • Brown CD, Mangravite LM, Engelhardt BE, (2013) Integrative Modeling of eQTLs and Cis-Regulatory Elements Suggests Mechanisms Underlying Cell Type Specificity of eQTLs. PLoS Genetics9: e1003649+. doi: 10.1371/journal.pgen.100364923935528
    • (2013) PLoS Genetics , vol.9 , pp. e1003649+
    • Brown, C.D.1    Mangravite, L.M.2    Engelhardt, B.E.3
  • 46
    • 84929001104 scopus 로고    scopus 로고
    • The Genotype-Tissue Expression (GTEx) pilot analysis: Multitissue gene regulation in humans
    • . ().:–
    • Ardlie KG, Deluca DS, Segre AV, Sullivan TJ, Young TR, et al. (2015) The Genotype-Tissue Expression (GTEx) pilot analysis: Multitissue gene regulation in humans. Science348: 648–660. doi: 10.1126/science.1262110
    • (2015) Science , vol.348 , pp. 648-660
    • Ardlie, K.G.1    Deluca, D.S.2    Segre, A.V.3    Sullivan, T.J.4    Young, T.R.5
  • 50
    • 67149084291 scopus 로고    scopus 로고
    • Clustering high-dimensional data: A survey on subspace clustering, pattern-based clustering, and correlation clustering
    • ().:–
    • Kriegel HP, Kröger P, Zimek A, (2009) Clustering high-dimensional data: A survey on subspace clustering, pattern-based clustering, and correlation clustering. ACM Trans Knowl Discov Data3: 1–58. doi: 10.1145/1497577.1497578
    • (2009) ACM Trans Knowl Discov Data , vol.3 , pp. 1-58
    • Kriegel, H.P.1    Kröger, P.2    Zimek, A.3
  • 54
    • 67651018681 scopus 로고    scopus 로고
    • A polynomial time biclustering algorithm for finding approximate expression patterns in gene expression time series
    • 19497096, ().:
    • Madeira SC, Oliveira AL, (2009) A polynomial time biclustering algorithm for finding approximate expression patterns in gene expression time series. Algorithms for Molecular Biology4: 8. doi: 10.1186/1748-7188-4-819497096
    • (2009) Algorithms for Molecular Biology , vol.4 , pp. 8
    • Madeira, S.C.1    Oliveira, A.L.2
  • 55
    • 9944260282 scopus 로고    scopus 로고
    • Improved biclustering of microarray data demonstrated through systematic performance tests
    • ().:–
    • Turner H, Bailey T, Krzanowski W, (2005) Improved biclustering of microarray data demonstrated through systematic performance tests. Computational Statistics & Data Analysis48: 235–254. doi: 10.1016/j.csda.2004.02.003
    • (2005) Computational Statistics & Data Analysis , vol.48 , pp. 235-254
    • Turner, H.1    Bailey, T.2    Krzanowski, W.3
  • 60
    • 84979977008 scopus 로고    scopus 로고
    • A latent factor model with a mixture of sparse and dense factors to model gene expression data with confounding effects
    • ()
    • Gao C, Brown CD, Engelhardt BE, (2013) A latent factor model with a mixture of sparse and dense factors to model gene expression data with confounding effects. ArXiv preprint arXiv:13104792.
    • (2013) ArXiv preprint arXiv:13104792
    • Gao, C.1    Brown, C.D.2    Engelhardt, B.E.3
  • 63
    • 15944364151 scopus 로고    scopus 로고
    • An empirical Bayes approach to inferring large-scale gene association networks
    • 15479708, ().:–
    • Schäfer J, Strimmer K, (2005) An empirical Bayes approach to inferring large-scale gene association networks. Bioinformatics21: 754–764. doi: 10.1093/bioinformatics/bti06215479708
    • (2005) Bioinformatics , vol.21 , pp. 754-764
    • Schäfer, J.1    Strimmer, K.2
  • 64
    • 27844521293 scopus 로고    scopus 로고
    • A shrinkage approach to large-scale covariance matrix estimation and implications for functional genomics
    • 16646851, ()
    • Schäfer J, Strimmer K, (2005) A shrinkage approach to large-scale covariance matrix estimation and implications for functional genomics. Statistical Applications in Genetics and Molecular Biology4. 16646851
    • (2005) Statistical Applications in Genetics and Molecular Biology , vol.4
    • Schäfer, J.1    Strimmer, K.2
  • 65
    • 0030211964 scopus 로고    scopus 로고
    • Bagging predictors
    • ().:–
    • Breiman L, (1996) Bagging predictors. Machine Learning24: 123–140. doi: 10.1023/A:1018054314350
    • (1996) Machine Learning , vol.24 , pp. 123-140
    • Breiman, L.1
  • 66
    • 77952811536 scopus 로고    scopus 로고
    • The horseshoe estimator for sparse signals
    • ().:–
    • Carvalho CM, Polson NG, Scott JG, (2010) The horseshoe estimator for sparse signals. Biometrika97: 465–480. doi: 10.1093/biomet/asq017
    • (2010) Biometrika , vol.97 , pp. 465-480
    • Carvalho, C.M.1    Polson, N.G.2    Scott, J.G.3
  • 67
    • 0000300851 scopus 로고
    • Proper Bayes minimax estimators of the multivariate normal mean
    • ().:–
    • Strawderman WE, (1971) Proper Bayes minimax estimators of the multivariate normal mean. The Annals of Mathematical Statistics42: 385–388. doi: 10.1214/aoms/1177693528
    • (1971) The Annals of Mathematical Statistics , vol.42 , pp. 385-388
    • Strawderman, W.E.1
  • 68
    • 0011564321 scopus 로고
    • A robust generalized Bayes estimator and confidence region for a multivariate normal mean
    • ().:–
    • Berger J, (1980) A robust generalized Bayes estimator and confidence region for a multivariate normal mean. The Annals of Statistics8: 716–761. doi: 10.1214/aos/1176345068
    • (1980) The Annals of Statistics , vol.8 , pp. 716-761
    • Berger, J.1
  • 69
    • 18244409687 scopus 로고    scopus 로고
    • Gene expression profiling predicts clinical outcome of breast cancer
    • . ().:–
    • Van’t Veer LJ, Dai H, Van de Vijver MJ, He YD, Hart AAM, et al. (2002) Gene expression profiling predicts clinical outcome of breast cancer. Nature415: 530–536. doi: 10.1038/415530a
    • (2002) Nature , vol.415 , pp. 530-536
    • Van’t Veer, L.J.1    Dai, H.2    Van de Vijver, M.J.3    He, Y.D.4    Hart, A.A.M.5
  • 72
    • 84924268476 scopus 로고    scopus 로고
    • Estrogen receptor-positive breast cancer molecular signatures and therapeutic potentials
    • 24649067, ().:–
    • Zhang MH, Man HT, Zhao XD, Dong N, Ma SL, (2014) Estrogen receptor-positive breast cancer molecular signatures and therapeutic potentials. Biomedical Reports2: 41–52. doi: 10.3892/br.2013.18724649067
    • (2014) Biomedical Reports , vol.2 , pp. 41-52
    • Zhang, M.H.1    Man, H.T.2    Zhao, X.D.3    Dong, N.4    Ma, S.L.5
  • 73
    • 84863157850 scopus 로고    scopus 로고
    • Integrated cross-species transcriptional network analysis of metastatic susceptibility
    • . ().:–
    • Hu Y, Wu G, Rusch M, Lukes L, Buetow KH, et al. (2012) Integrated cross-species transcriptional network analysis of metastatic susceptibility. Proceedings of the National Academy of Sciences109: 3184–3189. doi: 10.1073/pnas.1117872109
    • (2012) Proceedings of the National Academy of Sciences , vol.109 , pp. 3184-3189
    • Hu, Y.1    Wu, G.2    Rusch, M.3    Lukes, L.4    Buetow, K.H.5
  • 75
    • 79955653058 scopus 로고    scopus 로고
    • Down-regulation of CD3-ζ is a breast cancer biomarker associated with immune suppression
    • 20883209, ().:–
    • Yu B, Zhang W, (2011) Down-regulation of CD3-ζ is a breast cancer biomarker associated with immune suppression. Cell Biology International35: 165–169. doi: 10.1042/CBI2010034620883209
    • (2011) Cell Biology International , vol.35 , pp. 165-169
    • Yu, B.1    Zhang, W.2
  • 76
    • 84904913957 scopus 로고    scopus 로고
    • CXCR3 deficiency enhances tumor progression by promoting macrophage M2 polarization in a murine breast cancer model
    • 24679047, . ().:–
    • Oghumu S, Varikuti S, Terrazas C, Kotov D, Nasser MW, et al. (2014) CXCR3 deficiency enhances tumor progression by promoting macrophage M2 polarization in a murine breast cancer model. Immunology143: 109–119. doi: 10.1111/imm.1229324679047
    • (2014) Immunology , vol.143 , pp. 109-119
    • Oghumu, S.1    Varikuti, S.2    Terrazas, C.3    Kotov, D.4    Nasser, M.W.5
  • 77
    • 84925498870 scopus 로고    scopus 로고
    • Divergent roles of CXCR3 isoforms in promoting cancer stem-like cell survival and metastasis
    • . ().:–
    • Li Y, Reader JC, Ma X, Kundu N, Kochel T, et al. (2014) Divergent roles of CXCR3 isoforms in promoting cancer stem-like cell survival and metastasis. Breast Cancer Research and Treatment: 1–13.
    • (2014) Breast Cancer Research and Treatment , pp. 1-13
    • Li, Y.1    Reader, J.C.2    Ma, X.3    Kundu, N.4    Kochel, T.5
  • 78
    • 84055222589 scopus 로고    scopus 로고
    • The wnt/β-catenin signaling pathway: A potential therapeutic target in the treatment of triple negative breast cancer
    • 21898546, ().:–
    • King TD, Suto MJ, Li Y, (2012) The wnt/β-catenin signaling pathway: A potential therapeutic target in the treatment of triple negative breast cancer. Journal of Cellular Biochemistry113: 13–18. doi: 10.1002/jcb.2335021898546
    • (2012) Journal of Cellular Biochemistry , vol.113 , pp. 13-18
    • King, T.D.1    Suto, M.J.2    Li, Y.3
  • 79
    • 84885406105 scopus 로고    scopus 로고
    • MiR-26b is down-regulated in carcinoma-associated fibroblasts from ER-positive breast cancers leading to enhanced cell migration and invasion
    • 23939832, . ().:–
    • Verghese ET, Drury R, Green CA, Holliday DL, Lu X, et al. (2013) MiR-26b is down-regulated in carcinoma-associated fibroblasts from ER-positive breast cancers leading to enhanced cell migration and invasion. The Journal of Pathology231: 388–399. doi: 10.1002/path.424823939832
    • (2013) The Journal of Pathology , vol.231 , pp. 388-399
    • Verghese, E.T.1    Drury, R.2    Green, C.A.3    Holliday, D.L.4    Lu, X.5
  • 80
    • 84865112255 scopus 로고    scopus 로고
    • The H3K27 demethylase UTX regulates somatic and germ cell epigenetic reprogramming
    • 22801502, . ().:–
    • Mansour AA, Gafni O, Weinberger L, Zviran A, Ayyash M, et al. (2012) The H3K27 demethylase UTX regulates somatic and germ cell epigenetic reprogramming. Nature488: 409–413. doi: 10.1038/nature1127222801502
    • (2012) Nature , vol.488 , pp. 409-413
    • Mansour, A.A.1    Gafni, O.2    Weinberger, L.3    Zviran, A.4    Ayyash, M.5
  • 81
    • 84920580721 scopus 로고    scopus 로고
    • The H3K27me3 demethylase UTX is a gender-specific tumor suppressor in T-cell acute lymphoblastic leukemia
    • 25320243, . ().:–
    • Van der Meulen J, Sanghvi V, Mavrakis K, Durinck K, Fang F, et al. (2015) The H3K27me3 demethylase UTX is a gender-specific tumor suppressor in T-cell acute lymphoblastic leukemia. Blood125: 13–21. doi: 10.1182/blood-2014-05-57727025320243
    • (2015) Blood , vol.125 , pp. 13-21
    • Van der Meulen, J.1    Sanghvi, V.2    Mavrakis, K.3    Durinck, K.4    Fang, F.5
  • 82
    • 0025667395 scopus 로고
    • Amplification of the ZFY and ZFX genes for sex identification in humans, cattle, sheep and goats
    • 1369448, ().:–
    • Aasen E, Medrano J, (1990) Amplification of the ZFY and ZFX genes for sex identification in humans, cattle, sheep and goats. Biotechnology8: 1279–1281. doi: 10.1038/nbt1290-12791369448
    • (1990) Biotechnology , vol.8 , pp. 1279-1281
    • Aasen, E.1    Medrano, J.2
  • 83
    • 21444432932 scopus 로고    scopus 로고
    • Sexually dimorphic expression of USP9X is related to sex chromosome complement in adult mouse brain
    • 15978012, ().:–
    • Xu J, Taya S, Kaibuchi K, Arnold A, (2005) Sexually dimorphic expression of USP9X is related to sex chromosome complement in adult mouse brain. The European Journal of Neuroscience21: 3017–3022. doi: 10.1111/j.1460-9568.2005.04134.x15978012
    • (2005) The European Journal of Neuroscience , vol.21 , pp. 3017-3022
    • Xu, J.1    Taya, S.2    Kaibuchi, K.3    Arnold, A.4
  • 84
    • 0038005018 scopus 로고    scopus 로고
    • DAVID: Database for annotation, visualization, and integrated discovery
    • 12734009, . ().:
    • Dennis G, Sherman BT, Hosack DA, Yang J, Gao W, et al. (2003) DAVID: Database for annotation, visualization, and integrated discovery. Genome Biology4: P3. doi: 10.1186/gb-2003-4-5-p312734009
    • (2003) Genome Biology , vol.4 , pp. P3
    • Dennis, G.1    Sherman, B.T.2    Hosack, D.A.3    Yang, J.4    Gao, W.5
  • 85
    • 84885190209 scopus 로고    scopus 로고
    • Angiogenesis and vascular functions in modulation of obesity, adipose metabolism, and insulin sensitivity
    • 24035587, ().:–
    • Cao Y, (2013) Angiogenesis and vascular functions in modulation of obesity, adipose metabolism, and insulin sensitivity. Cell Metabolism18: 478–489. doi: 10.1016/j.cmet.2013.08.00824035587
    • (2013) Cell Metabolism , vol.18 , pp. 478-489
    • Cao, Y.1
  • 86
    • 1942485347 scopus 로고    scopus 로고
    • Toll-like receptors: Function and roles in lung disease
    • 15064235, ().:–
    • Basu S, Fenton MJ, (2004) Toll-like receptors: Function and roles in lung disease. American Journal of Physiology286: L887–L892. 15064235
    • (2004) American Journal of Physiology , vol.286 , pp. L887-L892
    • Basu, S.1    Fenton, M.J.2
  • 87
    • 38949216025 scopus 로고    scopus 로고
    • DOK1 mediates high-fat diet–induced adipocyte hypertrophy and obesity through modulation of PPAR-γ phosphorylation
    • 18204460, . ().:–
    • Hosooka T, Noguchi T, Kotani K, Nakamura T, Sakaue H, et al. (2008) DOK1 mediates high-fat diet–induced adipocyte hypertrophy and obesity through modulation of PPAR-γ phosphorylation. Nature Medicine14: 188–193. doi: 10.1038/nm170618204460
    • (2008) Nature Medicine , vol.14 , pp. 188-193
    • Hosooka, T.1    Noguchi, T.2    Kotani, K.3    Nakamura, T.4    Sakaue, H.5
  • 88
    • 84879771334 scopus 로고    scopus 로고
    • Non-telomeric role for RAP1 in regulating metabolism and protecting against obesity
    • 23791522, . ().:–
    • Yeung F, Ramírez CM, Mateos-Gomez PA, Pinzaru A, Ceccarini G, et al. (2013) Non-telomeric role for RAP1 in regulating metabolism and protecting against obesity. Cell Reports3: 1847–1856. doi: 10.1016/j.celrep.2013.05.03223791522
    • (2013) Cell Reports , vol.3 , pp. 1847-1856
    • Yeung, F.1    Ramírez, C.M.2    Mateos-Gomez, P.A.3    Pinzaru, A.4    Ceccarini, G.5
  • 89
    • 44449115735 scopus 로고    scopus 로고
    • High-fat diet alters PP2A, TC10, and CIP4 expression in visceral adipose tissue of rats
    • 18388891, ().:–
    • Jun HS, Hwang K, Kim Y, Park T, (2008) High-fat diet alters PP2A, TC10, and CIP4 expression in visceral adipose tissue of rats. Obesity16: 1226–1231. doi: 10.1038/oby.2008.22018388891
    • (2008) Obesity , vol.16 , pp. 1226-1231
    • Jun, H.S.1    Hwang, K.2    Kim, Y.3    Park, T.4
  • 90
    • 84857043858 scopus 로고    scopus 로고
    • Diet-induced obesity affects expression of adiponutrin/PNPLA3 and adipose triglyceride lipase, two members of the same family
    • 21556044, ().:–
    • Oliver P, Caimari A, Díaz-Rúa R, Palou A, (2012) Diet-induced obesity affects expression of adiponutrin/PNPLA3 and adipose triglyceride lipase, two members of the same family. International Journal of Obesity36: 225–232. doi: 10.1038/ijo.2011.9221556044
    • (2012) International Journal of Obesity , vol.36 , pp. 225-232
    • Oliver, P.1    Caimari, A.2    Díaz-Rúa, R.3    Palou, A.4
  • 91
    • 84876289266 scopus 로고    scopus 로고
    • Evidence for a role of LPGAT1 in influencing BMI and percent body fat in Native Americans
    • 23505186, . ().:–
    • Traurig MT, Orczewska JI, Ortiz DJ, Bian L, Marinelarena AM, et al. (2013) Evidence for a role of LPGAT1 in influencing BMI and percent body fat in Native Americans. Obesity21: 193–202. doi: 10.1002/oby.2024323505186
    • (2013) Obesity , vol.21 , pp. 193-202
    • Traurig, M.T.1    Orczewska, J.I.2    Ortiz, D.J.3    Bian, L.4    Marinelarena, A.M.5
  • 92
    • 84881549640 scopus 로고    scopus 로고
    • A core human primary tumor angiogenesis signature identifies the endothelial orphan receptor ELTD1 as a key regulator of angiogenesis
    • 23871637, . ().:–
    • Masiero M, Simões FC, Han HD, Snell C, Peterkin T, et al. (2013) A core human primary tumor angiogenesis signature identifies the endothelial orphan receptor ELTD1 as a key regulator of angiogenesis. Cancer Cell24: 229–241. doi: 10.1016/j.ccr.2013.06.00423871637
    • (2013) Cancer Cell , vol.24 , pp. 229-241
    • Masiero, M.1    Simões, F.C.2    Han, H.D.3    Snell, C.4    Peterkin, T.5
  • 93
    • 84899987572 scopus 로고    scopus 로고
    • Aberrant chloride intracellular channel 4 expression contributes to endothelial dysfunction in pulmonary arterial hypertension
    • 24503951, . ().:–
    • Wojciak-Stothard B, Abdul-Salam VB, Lao KH, Tsang H, Irwin DC, et al. (2014) Aberrant chloride intracellular channel 4 expression contributes to endothelial dysfunction in pulmonary arterial hypertension. Circulation129: 1770–1780. doi: 10.1161/CIRCULATIONAHA.113.00679724503951
    • (2014) Circulation , vol.129 , pp. 1770-1780
    • Wojciak-Stothard, B.1    Abdul-Salam, V.B.2    Lao, K.H.3    Tsang, H.4    Irwin, D.C.5
  • 94
    • 84907574956 scopus 로고    scopus 로고
    • Associations between CD36 gene polymorphisms and susceptibility to coronary artery heart disease
    • 25118627, . ().:–
    • Zhang Y, Ling Z, Deng S, Du H, Yin Y, et al. (2014) Associations between CD36 gene polymorphisms and susceptibility to coronary artery heart disease. Brazilian Journal of Medical and Biological Research47: 895–903. doi: 10.1590/1414-431X2014382525118627
    • (2014) Brazilian Journal of Medical and Biological Research , vol.47 , pp. 895-903
    • Zhang, Y.1    Ling, Z.2    Deng, S.3    Du, H.4    Yin, Y.5
  • 95
    • 0035809779 scopus 로고    scopus 로고
    • Characterization of mouse brain-specific angiogenesis inhibitor 1 (BAI1) and phytanoyl-CoA alpha-hydroxylase-associated protein 1, a novel BAI1-binding protein
    • 11245925, . ().:–
    • Koh JT, Lee ZH, Ahn KY, Kim JK, Bae CS, et al. (2001) Characterization of mouse brain-specific angiogenesis inhibitor 1 (BAI1) and phytanoyl-CoA alpha-hydroxylase-associated protein 1, a novel BAI1-binding protein. Molecular Brain Research87: 223–237. doi: 10.1016/S0169-328X(01)00004-311245925
    • (2001) Molecular Brain Research , vol.87 , pp. 223-237
    • Koh, J.T.1    Lee, Z.H.2    Ahn, K.Y.3    Kim, J.K.4    Bae, C.S.5
  • 96
    • 77952485515 scopus 로고    scopus 로고
    • Mechanical ventilation modulates TLR4 and IRAK-3 in a non-infectious, ventilator-induced lung injury model
    • 20199666, . ().:
    • Villar J, Cabrera NE, Casula M, Flores C, Valladares F, et al. (2010) Mechanical ventilation modulates TLR4 and IRAK-3 in a non-infectious, ventilator-induced lung injury model. Respiratory Research11: 27. doi: 10.1186/1465-9921-11-2720199666
    • (2010) Respiratory Research , vol.11 , pp. 27
    • Villar, J.1    Cabrera, N.E.2    Casula, M.3    Flores, C.4    Valladares, F.5
  • 97
    • 79955843762 scopus 로고    scopus 로고
    • CD46 protects against chronic obstructive pulmonary disease
    • 21573156, ().:
    • Grumelli S, Lu B, Peterson L, Maeno T, Gerard C, (2011) CD46 protects against chronic obstructive pulmonary disease. PLoS ONE6: e18785. doi: 10.1371/journal.pone.001878521573156
    • (2011) PLoS ONE , vol.6 , pp. e18785
    • Grumelli, S.1    Lu, B.2    Peterson, L.3    Maeno, T.4    Gerard, C.5
  • 98
    • 84899427018 scopus 로고    scopus 로고
    • Expression of human CD46 modulates inflammation associated with GalTKO lung xenograft injury
    • 24698431, . ().:–
    • Burdorf L, Stoddard T, Zhang T, Rybak E, Riner A, et al. (2014) Expression of human CD46 modulates inflammation associated with GalTKO lung xenograft injury. American Journal of Transplantation14: 1084–1095. doi: 10.1111/ajt.1267324698431
    • (2014) American Journal of Transplantation , vol.14 , pp. 1084-1095
    • Burdorf, L.1    Stoddard, T.2    Zhang, T.3    Rybak, E.4    Riner, A.5
  • 99
    • 77449085784 scopus 로고    scopus 로고
    • The candidate gene approach in asthma: What happens with the neighbours?
    • 19654613, ():
    • Reijmerink NE, Postma DS, Koppelman GH, (2010) The candidate gene approach in asthma: What happens with the neighbours?European Journal of Human Genetics18: 17. doi: 10.1038/ejhg.2009.12819654613
    • (2010) European Journal of Human Genetics , vol.18 , pp. 17
    • Reijmerink, N.E.1    Postma, D.S.2    Koppelman, G.H.3
  • 100
    • 56649097358 scopus 로고    scopus 로고
    • Loss of 13q is associated with genes involved in cell cycle and proliferation in dedifferentiated hepatocellular carcinoma
    • 18820673, . ().:–
    • Skawran B, Steinemann D, Becker T, Buurman R, Flik J, et al. (2008) Loss of 13q is associated with genes involved in cell cycle and proliferation in dedifferentiated hepatocellular carcinoma. Modern Pathology21: 1479–1489. doi: 10.1038/modpathol.2008.14718820673
    • (2008) Modern Pathology , vol.21 , pp. 1479-1489
    • Skawran, B.1    Steinemann, D.2    Becker, T.3    Buurman, R.4    Flik, J.5
  • 101
    • 0030913615 scopus 로고    scopus 로고
    • Expression of MCAM/MUC18 by human melanoma cells leads to increased tumor growth and metastasis
    • 9187135, . ().:–
    • Xie S, Luca M, Huang S, Gutman M, Reich R, et al. (1997) Expression of MCAM/MUC18 by human melanoma cells leads to increased tumor growth and metastasis. Cancer Research57: 2295–2303. 9187135
    • (1997) Cancer Research , vol.57 , pp. 2295-2303
    • Xie, S.1    Luca, M.2    Huang, S.3    Gutman, M.4    Reich, R.5
  • 102
    • 0036735301 scopus 로고    scopus 로고
    • Fully human antibodies to MCAM/MUC18 inhibit tumor growth and metastasis of human melanoma
    • 12208768, . ().:–
    • Mills L, Tellez C, Huang S, Baker C, McCarty M, et al. (2002) Fully human antibodies to MCAM/MUC18 inhibit tumor growth and metastasis of human melanoma. Cancer Research62: 5106–5114. 12208768
    • (2002) Cancer Research , vol.62 , pp. 5106-5114
    • Mills, L.1    Tellez, C.2    Huang, S.3    Baker, C.4    McCarty, M.5
  • 103
    • 69849093086 scopus 로고    scopus 로고
    • Differential expression of the antioxidant repair enzyme methionine sulfoxide reductase (MSRA and MSRB) in human skin
    • 19542914, ().:–
    • Taungjaruwinai WM, Bhawan J, Keady M, Thiele JJ, (2009) Differential expression of the antioxidant repair enzyme methionine sulfoxide reductase (MSRA and MSRB) in human skin. The American Journal of Dermatopathology31: 427–431. doi: 10.1097/DAD.0b013e3181882c2119542914
    • (2009) The American Journal of Dermatopathology , vol.31 , pp. 427-431
    • Taungjaruwinai, W.M.1    Bhawan, J.2    Keady, M.3    Thiele, J.J.4
  • 104
    • 84980024569 scopus 로고    scopus 로고
    • McDowell I, Pai A, Guo C, Vockley C, Brown C, et al. (2014) Identification of long intergenic non-coding RNA eQTLs in four primary tissues reveals association with obesity-related traits. In Review
    • McDowell I, Pai A, Guo C, Vockley C, Brown C, et al. (2014) Identification of long intergenic non-coding RNA eQTLs in four primary tissues reveals association with obesity-related traits. In Review.
  • 105
    • 84455190873 scopus 로고    scopus 로고
    • Thymidine kinase 2 deficiency-induced mitochondrial DNA depletion causes abnormal development of adipose tissues and adipokine levels in mice
    • 22216345, . ().:
    • Villarroya J, Dorado B, Vila MR, Garcia-Arumí E, Domingo P, et al. (2011) Thymidine kinase 2 deficiency-induced mitochondrial DNA depletion causes abnormal development of adipose tissues and adipokine levels in mice. PLoS ONE6: e29691. doi: 10.1371/journal.pone.002969122216345
    • (2011) PLoS ONE , vol.6 , pp. e29691
    • Villarroya, J.1    Dorado, B.2    Vila, M.R.3    Garcia-Arumí, E.4    Domingo, P.5
  • 107
    • 84865085052 scopus 로고    scopus 로고
    • Dynamic regulation of the cerebral cavernous malformation pathway controls vascular stability and growth
    • 22898778, . ().:–
    • Zheng X, Xu C, Smith AO, Stratman AN, Zou Z, et al. (2012) Dynamic regulation of the cerebral cavernous malformation pathway controls vascular stability and growth. Developmental Cell23: 342–355. doi: 10.1016/j.devcel.2012.06.00422898778
    • (2012) Developmental Cell , vol.23 , pp. 342-355
    • Zheng, X.1    Xu, C.2    Smith, A.O.3    Stratman, A.N.4    Zou, Z.5
  • 108
    • 84866660544 scopus 로고    scopus 로고
    • ARHGEF15 promotes retinal angiogenesis by mediating VEGF-induced CDC42 activation and potentiating RHOJ inactivation in endothelial cells
    • 23029280, . ().:
    • Kusuhara S, Fukushima Y, Fukuhara S, Jakt LM, Okada M, et al. (2012) ARHGEF15 promotes retinal angiogenesis by mediating VEGF-induced CDC42 activation and potentiating RHOJ inactivation in endothelial cells. PLoS ONE7: e45858. doi: 10.1371/journal.pone.004585823029280
    • (2012) PLoS ONE , vol.7 , pp. e45858
    • Kusuhara, S.1    Fukushima, Y.2    Fukuhara, S.3    Jakt, L.M.4    Okada, M.5
  • 109
    • 84877587242 scopus 로고    scopus 로고
    • Siglec-E is a negative regulator of acute pulmonary neutrophil inflammation and suppresses CD11bβ2-integrin–dependent signaling
    • 23315163, . ().:–
    • McMillan SJ, Sharma RS, McKenzie EJ, Richards HE, Zhang J, et al. (2013) Siglec-E is a negative regulator of acute pulmonary neutrophil inflammation and suppresses CD11bβ2-integrin–dependent signaling. Blood121: 2084–2094. doi: 10.1182/blood-2012-08-44998323315163
    • (2013) Blood , vol.121 , pp. 2084-2094
    • McMillan, S.J.1    Sharma, R.S.2    McKenzie, E.J.3    Richards, H.E.4    Zhang, J.5
  • 110
    • 33646144011 scopus 로고    scopus 로고
    • Susceptibility to Buruli ulcer is associated with the SLC11A1 (NRAMP1) D543N polymorphism
    • 16395392, . ().:–
    • Stienstra Y, Van Der Werf T, Oosterom E, Nolte I, Van der Graaf W, et al. (2006) Susceptibility to Buruli ulcer is associated with the SLC11A1 (NRAMP1) D543N polymorphism. Genes and Immunity7: 185–189. doi: 10.1038/sj.gene.636428116395392
    • (2006) Genes and Immunity , vol.7 , pp. 185-189
    • Stienstra, Y.1    Van Der Werf, T.2    Oosterom, E.3    Nolte, I.4    Van der Graaf, W.5
  • 111
    • 0034960264 scopus 로고    scopus 로고
    • Missing value estimation methods for DNA microarrays
    • 11395428, . ().:–
    • Troyanskaya O, Cantor M, Sherlock G, Brown P, Hastie T, et al. (2001) Missing value estimation methods for DNA microarrays. Bioinformatics17: 520–525. doi: 10.1093/bioinformatics/17.6.52011395428
    • (2001) Bioinformatics , vol.17 , pp. 520-525
    • Troyanskaya, O.1    Cantor, M.2    Sherlock, G.3    Brown, P.4    Hastie, T.5
  • 112
    • 84905049901 scopus 로고    scopus 로고
    • Trimmomatic: A flexible trimmer for Illumina sequence data
    • 24695404, ().:–
    • Bolger AM, Lohse M, Usadel B, (2014) Trimmomatic: A flexible trimmer for Illumina sequence data. Bioinformatics30: 2114–2120. doi: 10.1093/bioinformatics/btu17024695404
    • (2014) Bioinformatics , vol.30 , pp. 2114-2120
    • Bolger, A.M.1    Lohse, M.2    Usadel, B.3
  • 113
    • 84980024561 scopus 로고    scopus 로고
    • Andrews S (2012)
    • Andrews S (2012). http://www.bioinformatics.bbsrc.ac.uk/projects/fastqc/.
  • 114
    • 84897397058 scopus 로고    scopus 로고
    • featureCounts: An efficient general purpose program for assigning sequence reads to genomic features
    • 24227677, ().:–
    • Liao Y, Smyth GK, Shi W, (2014) featureCounts: An efficient general purpose program for assigning sequence reads to genomic features. Bioinformatics30: 923–930. doi: 10.1093/bioinformatics/btt65624227677
    • (2014) Bioinformatics , vol.30 , pp. 923-930
    • Liao, Y.1    Smyth, G.K.2    Shi, W.3
  • 115
    • 84858068675 scopus 로고    scopus 로고
    • Removing technical variability in RNA-seq data using conditional quantile normalization
    • 22285995, ().:–
    • Hansen KD, Irizarry RA, Wu Z, (2012) Removing technical variability in RNA-seq data using conditional quantile normalization. Biostatistics13: 204–216. doi: 10.1093/biostatistics/kxr05422285995
    • (2012) Biostatistics , vol.13 , pp. 204-216
    • Hansen, K.D.1    Irizarry, R.A.2    Wu, Z.3
  • 117
    • 84979979756 scopus 로고    scopus 로고
    • Bastian M, Heymann S, Jacomy M (2009) Gephi: An open source software for exploring and manipulating networks.
    • (2009)
    • Bastian, M.1    Heymann, S.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.