메뉴 건너뛰기




Volumn 103, Issue 484, 2008, Pages 1438-1456

High-dimensional sparse factor modeling: Applications in gene expression genomics

Author keywords

Biological pathways; Breast cancer genomics; Decomposing gene expression patterns; Dirichlet process factor model; Evolutionary stochastic search; Factor regression; Gene expression analysis; Gene expression profiling; Gene networks; Non Gaussian multivariate analysis; Sparse factor models; Sparsity priors.

Indexed keywords


EID: 62549125109     PISSN: 01621459     EISSN: None     Source Type: Journal    
DOI: 10.1198/016214508000000869     Document Type: Article
Times cited : (395)

References (40)
  • 1
    • 0034413190 scopus 로고    scopus 로고
    • Bayesian dynamic factor models and portfolio allocation
    • Aguilar, O., andWest, M. (2000), "Bayesian Dynamic Factor Models and Portfolio Allocation," Journal of Business & Economic Statistics, 18, 338-357.
    • (2000) Journal of Business & Economic Statistics , vol.18 , pp. 338-357
    • Aguilar, O.1    West, M.2
  • 3
    • 0036401627 scopus 로고    scopus 로고
    • Bayesian hierarchical model for identifying changes in gene expression from microarray experiments
    • Broet, P., Richardson, S., and Radvanyi, F. (2002), "Bayesian Hierarchical Model for Identifying Changes in Gene Expression From Microarray Experiments," Journal of Computational Biology, 9, 671-683.
    • (2002) Journal of Computational Biology , vol.9 , pp. 671-683
    • Broet, P.1    Richardson, S.2    Radvanyi, F.3
  • 6
    • 18444401138 scopus 로고    scopus 로고
    • A bayesian mixture model for differential gene expression
    • Ser. C
    • Do, K., Müller, P., and Tang, F. (2005), "A Bayesian Mixture Model for Differential Gene Expression," Journal of the Royal Statistical Society, Ser. C, 54, 627-644.
    • (2005) Journal of the Royal Statistical Society , Issue.54 , pp. 627-644
    • Do, K.1    Müller, P.2    Tang, F.3
  • 10
    • 0012890141 scopus 로고    scopus 로고
    • Computing nonparametric hierarchical models
    • eds. P. Müller D. Dey, and D. Sinha, New York: Springer-Verlag
    • - (1998), "Computing Nonparametric Hierarchical Models," Practical Non- and Semiparametric Bayesian Statistics, eds. P. Müller, D. Dey, and D. Sinha, New York: Springer-Verlag, pp. 1-16.
    • (1998) Practical Non- And Semiparametric Bayesian Statistics , pp. 1-16
  • 11
    • 9444236895 scopus 로고    scopus 로고
    • Minireview. cyclin d1. normal and abnormal functions
    • Fu, M., Wang, C., Li, Z., Sakamaki, T., and Pestell, R. (2004), "Minireview. Cyclin D1. Normal and Abnormal Functions," Endocrinology, 145, 5439-5447.
    • (2004) Endocrinology , vol.145 , pp. 5439-5447
    • Fu, M.1    Wang, C.2    Li, Z.3    Sakamaki, T.4    Pestell, R.5
  • 14
    • 0042307325 scopus 로고    scopus 로고
    • The ErbB2/ErbB3 heterodimer functions as an oncogenic unit: ErbB2 requires ErbB3 to drive breast tumor cell proliferation
    • Holbro, T., Beerli, R., Maurer, F., Koziczak, M., Barbas, C. R., and Hynes, N. (2003), "The ErbB2/ErbB3 Heterodimer Functions as an Oncogenic Unit: ErbB2 Requires ErbB3 to Drive Breast Tumor Cell Proliferation," Proceedings of the National Academy of Sciences, 100, 8933-8938.
    • (2003) Proceedings of the National Academy of Sciences , vol.100 , pp. 8933-8938
    • Holbro, T.1    Beerli, R.2    Maurer, F.3    Koziczak, M.4    Barbas, C.R.5    Hynes, N.6
  • 16
    • 0042809627 scopus 로고    scopus 로고
    • Gene expression profiles and predicting clinical characteristics of breast cancer
    • Huang, E., West, M., and Nevins, J. R. (2002), "Gene Expression Profiles and Predicting Clinical Characteristics of Breast Cancer," Hormone Research, 58, 55-73.
    • (2002) Hormone Research , vol.58 , pp. 55-73
    • Huang, E.1    West, M.2    Nevins, J.R.3
  • 17
    • 0042744696 scopus 로고    scopus 로고
    • Detecting differentially expressed genes in microarrays using bayesian model selection
    • Ishwaran, H., and Rao, J. (2003), "Detecting Differentially Expressed Genes in Microarrays Using Bayesian Model Selection," Journal of the American Statistical Association, 98, 438-455.
    • (2003) Journal of the American Statistical Association , vol.98 , pp. 438-455
    • Ishwaran, H.1    Rao, J.2
  • 18
    • 22944431540 scopus 로고    scopus 로고
    • Spike and slab gene selection for multigroup microarray data
    • - (2005), "Spike and Slab Gene Selection for Multigroup Microarray Data," Journal of the American Statistical Association, 100, 764-780.
    • (2005) Journal of the American Statistical Association , vol.100 , pp. 764-780
  • 19
    • 20144364427 scopus 로고    scopus 로고
    • Experiments in stochastic computation for high-dimensional graphical models
    • Jones, B., Dobra, A., Carvalho, C., Hans, C., Carter, C., and West, M. (2005), "Experiments in Stochastic Computation for High-Dimensional Graphical Models," Statistical Science, 20, 388-400.
    • (2005) Statistical Science , vol.20 , pp. 388-400
    • Jones, B.1    Dobra, A.2    Carvalho, C.3    Hans, C.4    Carter, C.5    West, M.6
  • 20
  • 21
    • 49449091830 scopus 로고    scopus 로고
    • Understanding the use of unlabelled data in predictive modelling
    • Liang, F., Mukherjee, S., and West, M. (2007), "Understanding the Use of Unlabelled Data in Predictive Modelling," Statistical Science, 22, 189-205.
    • (2007) Statistical Science , vol.22 , pp. 189-205
    • Liang, F.1    Mukherjee, S.2    West, M.3
  • 22
    • 1842539381 scopus 로고    scopus 로고
    • Bayesian model assessment in factor analysis
    • Lopes, H., andWest, M. (2003), "Bayesian Model Assessment in Factor Analysis," Statistica Sinica, 14, 41-67.
    • (2003) Statistica Sinica , vol.14 , pp. 41-67
    • Lopes, H.1    Andwest, M.2
  • 23
    • 49549125943 scopus 로고    scopus 로고
    • Sparse statistical modelling in gene expression genomics
    • eds. P. Müller, K. Do, and M. Vannucci, Cambridge, U.K.: Cambridge University Press
    • Lucas, J., Carvalho, C., Wang, Q., Bild, A., Nevins, J. R., and West, M. (2006), "Sparse Statistical Modelling in Gene Expression Genomics," in Bayesian Inference for Gene Expression and Proteomics, eds. P. Müller, K. Do, and M. Vannucci, Cambridge, U.K.: Cambridge University Press, pp. 155-176.
    • (2006) Bayesian Inference for Gene Expression and Proteomics , pp. 155-176
    • Lucas, J.1    Carvalho, C.2    Wang, Q.3    Bild, A.4    Nevins, J.R.5    West, M.6
  • 27
    • 0031815596 scopus 로고    scopus 로고
    • Toward an understanding of the functional complexity of the E2F and retinoblastoma families
    • Nevins, J. (1998), "Toward an Understanding of the Functional Complexity of the E2F and Retinoblastoma Families," Cell Growth and Differentiation, 9, 585-593.
    • (1998) Cell Growth and Differentiation , vol.9 , pp. 585-593
    • Nevins, J.1
  • 28
    • 0141994853 scopus 로고    scopus 로고
    • Towards integrated clinico-genomic models for personalized medicine: Combining gene expression signatures and clinical factors in breast cancer outcomes prediction
    • Nevins, J. R., Huang, E. S., Dressman, H., Pittman, J., Huang, A. T., and West, M. (2003), "Towards Integrated Clinico-Genomic Models for Personalized Medicine: Combining Gene Expression Signatures and Clinical Factors in Breast Cancer Outcomes Prediction," Human Molecular Genetics, 12, 153-157.
    • (2003) Human Molecular Genetics , vol.12 , pp. 153-157
    • Nevins, J.R.1    Huang, E.S.2    Dressman, H.3    Pittman, J.4    Huang, A.T.5    West, M.6
  • 33
    • 0001510491 scopus 로고    scopus 로고
    • The Rb and p53 pathway in cancer
    • Sherr, C., and McCormick, F. (2002), "The Rb and p53 Pathway in Cancer," Cancer Cell, 2, 103-112.
    • (2002) Cancer Cell , vol.2 , pp. 103-112
    • Sherr, C.1    McCormick, F.2
  • 34
    • 0036457915 scopus 로고    scopus 로고
    • Prediction and uncertainty in the analysis of gene expression profiles
    • Spang, R., Zuzan, H., West, M., Nevins, J. R., Blanchette, C., and Marks, J. R. (2001), "Prediction and Uncertainty in the Analysis of Gene Expression Profiles," In Silico Biology, 2, 369-381.
    • (2001) Silico Biology , vol.2 , pp. 369-381
    • Spang, R.1    Zuzan, H.2    West, M.3    Nevins, J.R.4    Blanchette, C.5    Marks, J.R.6
  • 37
    • 0242295767 scopus 로고    scopus 로고
    • Bayesian factor regression models in the "large p, small n"
    • eds. J. Bernardo et al., Oxford U.K.: Oxford University Press
    • West, M. (2003), "Bayesian Factor Regression Models in the "Large p, Small n" Paradigm," in Bayesian Statistics 7, eds. J. Bernardo et al., Oxford U.K.: Oxford University Press, pp. 723-732.
    • (2003) Paradigm," in Bayesian Statistics 7 , pp. 723-732
    • West, M.1
  • 39
    • 33745145845 scopus 로고    scopus 로고
    • Embracing the complexity of genomic data for personalized medicine
    • West, M., Huang, A. T., Ginsberg, G. and Nevins, J. R. (2006), "Embracing the Complexity of Genomic Data for Personalized Medicine," Genome Research, 16, 559-566.
    • (2006) Genome Research , vol.16 , pp. 559-566
    • West, M.1    Huang, A.T.2    Ginsberg, G.3    Nevins, J.R.4
  • 40
    • 0002612391 scopus 로고
    • Hierarchical priors and mixture models, with application in regression and density estimation
    • eds. A. Smith and P Freeman, London: Wiley
    • West, M., Müller, P., and Escobar, M. D. (1994), "Hierarchical Priors and Mixture Models, With Application in Regression and Density Estimation," in Aspects of Uncertainty: A Tribute to D.V. Lindley, eds. A. Smith and P. Freeman, London: Wiley, pp. 363-386.
    • (1994) Aspects of Uncertainty: A Tribute to D.V. Lindley , pp. 363-386
    • West, M.1    Müller, P.2    Escobar, M.D.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.